mRNA_P-wetherbeei_contig8589.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8589.1.1
Unique NamemRNA_P-wetherbeei_contig8589.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8589.1.1 vs. uniprot
Match: D7FZN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.470e-13
Identity = 52/126 (41.27%), Postives = 69/126 (54.76%), Query Frame = 1 
Query:   10 IGAVAVSAELGLVATASGGDIRLWDEMALEFEGGVLGHHADILKLLFLPGTPLLLAGDAAGAVAVWALRFVGKTAARECGEDSQLASHDGSTSSPAFGSTYSAVPAAAAAAIPADVPGVVADSGAR 387
            I A AVS +  L+ATA+GG+IRLW +  L F+GG+    AD+L L+FLPGT  LLA D+ G V +W   F         G  +       ++SSPA   T  A      AA+P+DV  V A S +R
Sbjct:  164 ISACAVSQDAQLIATAAGGEIRLWHKQDLTFQGGISDLDADVLGLVFLPGTACLLASDSGGDVVLWVAEFSKAAGEARAGNKTAAGGTRSTSSSPAVPDTRGAK-----AALPSDVE-VTAQSDSR 283
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BLAST of mRNA_P-wetherbeei_contig8589.1.1 vs. uniprot
Match: A0A6H5JSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.020e-7
Identity = 35/92 (38.04%), Postives = 47/92 (51.09%), Query Frame = 1 
Query:   10 IGAVAVSAELGLVATASGGDIRLWDEMA----------------------LEFEGGVLGHHADILKLLFLPGTPLLLAGDAAGAVAVWALRF 219
            I A A+S +  L+ATA+GG+IRLW +                        L F+GG+    AD+L L+FLPGT  LLA D+ G V +W   F
Sbjct:  871 ISACAISQDAQLIATAAGGEIRLWHKQVWYQCSPFKLLRNMFESQVLIVDLSFQGGISDLDADVLGLVFLPGTACLLASDSGGDVVLWVTEF 962
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8589.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZN0_ECTSI4.470e-1341.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSG1_9PHAE2.020e-738.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8589contigP-wetherbeei_contig8589:252..660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size409
Hectar predicted targeting categorysignal peptide
Exons1
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.4120421-CDS-P-wetherbeei_contig8589:252..6601683187048.4120421-CDS-P-wetherbeei_contig8589:252..660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8589 253..660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8589.1.1prot_P-wetherbeei_contig8589.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8589 253..660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8589.1.1

>prot_P-wetherbeei_contig8589.1.1 ID=prot_P-wetherbeei_contig8589.1.1|Name=mRNA_P-wetherbeei_contig8589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
GSAIGAVAVSAELGLVATASGGDIRLWDEMALEFEGGVLGHHADILKLLF
LPGTPLLLAGDAAGAVAVWALRFVGKTAARECGEDSQLASHDGSTSSPAF
GSTYSAVPAAAAAAIPADVPGVVADSGARTRAVRHR
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mRNA from alignment at P-wetherbeei_contig8589:252..660-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8589.1.1 ID=mRNA_P-wetherbeei_contig8589.1.1|Name=mRNA_P-wetherbeei_contig8589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=409bp|location=Sequence derived from alignment at P-wetherbeei_contig8589:252..660- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGTGCGATTGGCGCGGTGGCAGTTTCCGCAGAGCTGGGCCTGGTTGC
AACGGCGAGCGGCGGCGACATTCGGCTCTGGGACGAGATGGCGTTGGAGT
TCGAGGGGGGCGTGCTCGGCCATCACGCCGACATCTTGAAGCTGCTCTTT
TTGCCTGGGACGCCACTGCTGCTCGCCGGTGACGCGGCCGGCGCTGTTGC
CGTCTGGGCACTGCGATTTGTCGGGAAGACCGCGGCGCGAGAATGCGGAG
AGGACAGCCAGCTCGCTTCGCACGACGGCTCAACGTCGTCGCCGGCCTTC
GGTTCCACATATTCGGCTGTCCCAGCCGCTGCTGCCGCCGCGATTCCCGC
TGATGTGCCTGGAGTAGTCGCTGATTCGGGAGCGCGGACAAGAGCTGTTC
GCCACAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8589:252..660-

>mRNA_P-wetherbeei_contig8589.1.1 ID=mRNA_P-wetherbeei_contig8589.1.1|Name=mRNA_P-wetherbeei_contig8589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig8589:252..660- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGTGCGATTGGCGCGGTGGCAGTTTCCGCAGAGCTGGGCCTGGTTGC
AACGGCGAGCGGCGGCGACATTCGGCTCTGGGACGAGATGGCGTTGGAGT
TCGAGGGGGGCGTGCTCGGCCATCACGCCGACATCTTGAAGCTGCTCTTT
TTGCCTGGGACGCCACTGCTGCTCGCCGGTGACGCGGCCGGCGCTGTTGC
CGTCTGGGCACTGCGATTTGTCGGGAAGACCGCGGCGCGAGAATGCGGAG
AGGACAGCCAGCTCGCTTCGCACGACGGCTCAACGTCGTCGCCGGCCTTC
GGTTCCACATATTCGGCTGTCCCAGCCGCTGCTGCCGCCGCGATTCCCGC
TGATGTGCCTGGAGTAGTCGCTGATTCGGGAGCGCGGACAAGAGCTGTTC
GCCACAGA
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