mRNA_P-wetherbeei_contig8585.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8585.1.1
Unique NamemRNA_P-wetherbeei_contig8585.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 9.380e-23
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 DVSAKIRALHREPAAEDWHLCCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNFL 222
            DV  +++A+H  P+ E +HLCCVC+   RDAA++HG TAHQ CC++CA+ +F RG  CP CR+PI  VV+NF+
Sbjct:  544 DVEQRLKAIHAGPSHEGFHLCCVCLDRPRDAALIHGKTAHQACCYDCAVELFERGLPCPYCRQPIAHVVKNFV 616          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: UPI0003F0E7FA (E3 ubiquitin-protein ligase Mdm2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0E7FA)

HSP 1 Score: 72.8 bits (177), Expect = 2.890e-13
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 SDVSAKIRALHREPAAEDWHLCCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNFL 222
            S  SA+ RA +         LC +C    + A+I+HG T HQ+CC++CA  +   G  CP CRRPI +VV+NFL
Sbjct:  826 SSSSAEARAFN--------DLCMICSSKPKTASIIHGRTGHQVCCYSCAKKLRRHGKPCPVCRRPIQMVVKNFL 891          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: A0A6F9DL71_9ASCI (E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DL71_9ASCI)

HSP 1 Score: 71.6 bits (174), Expect = 6.850e-13
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   61 LCCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNFL 222
            LC +C  N  DA IVHG   HQ CCF CA  +  RG +CP CR+PI +V++NF+
Sbjct:  370 LCNICRNNPNDATIVHGNNGHQFCCFRCAKRLKNRGKNCPVCRQPIMLVIKNFI 423          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: A0A6P4YUP8_BRABE (Protein Mdm4 n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YUP8_BRABE)

HSP 1 Score: 69.3 bits (168), Expect = 4.710e-12
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   64 CCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNFL 222
            C +C+   + A++VHG TAH +CC+ CA  ++ RG  CP CRRPI +VV+ F 
Sbjct:  506 CMICLSRPKVASMVHGRTAHLVCCYTCAKKLYKRGKPCPVCRRPIQMVVKTFF 558          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: A0A3M6UPB7_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UPB7_POCDA)

HSP 1 Score: 67.8 bits (164), Expect = 1.530e-11
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 1
Query:    7 VSAKIRALHREPAAEDWHLCCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNF 219
            V+ K   L      +D   C +CM+  ++A ++HG T H  CC+ CA  +  RG  CP CR PID V+R F
Sbjct:  320 VTEKGNTLASPEDTDDNSKCIICMEQPKNATVIHGDTGHCCCCYACAQVLKQRGDPCPICRAPIDHVIRQF 390          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: UPI0006B085A3 (E3 ubiquitin-protein ligase Mdm2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B085A3)

HSP 1 Score: 66.6 bits (161), Expect = 4.090e-11
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   64 CCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNFL 222
            C +C+Q  +   ++HG TAHQ+CC+ CA  +   G  CP CRR I  VVRNF+
Sbjct:  387 CSLCLQRPKTGTMIHGRTAHQVCCYKCARRLQSSGQKCPVCRRTIQRVVRNFI 439          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: UPI00109BA2AF (uncharacterized protein LOC110244124 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BA2AF)

HSP 1 Score: 66.2 bits (160), Expect = 5.390e-11
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   46 AEDWHLCCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNF 219
            A+D   C +C++N ++A ++HG T H  CC++CA  +  RG  CP CR+ ID V++ F
Sbjct:  335 ADDGDECIICLENPKNATLIHGDTGHLCCCWSCAQVLKKRGDKCPICRQRIDHVIKQF 392          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: A0A7M5WWR9_9CNID (RING-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WWR9_9CNID)

HSP 1 Score: 65.9 bits (159), Expect = 6.970e-11
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   64 CCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNF 219
            C +C    ++A IVHG T H  CC +CA T+  RG +CP CR PID+V++ F
Sbjct:  307 CVICCSRRKNATIVHGNTGHVCCCISCANTMQQRGDNCPICRAPIDLVIKQF 358          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: A0A2B4SU88_STYPI (E3 ubiquitin-protein ligase Mdm2 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SU88_STYPI)

HSP 1 Score: 65.5 bits (158), Expect = 9.920e-11
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query:    7 VSAKIRALHREPAAEDWHLCCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNF 219
            V+ K   L      +D   C +CM   ++A ++HG T H  CC+ CA  +  RG  CP CR PID V+R F
Sbjct:  307 VTEKGNTLAFPEDTDDNSKCIICMDQPKNATVIHGDTGHCCCCWACAQVLKQRGDPCPICRAPIDHVIRQF 377          
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Match: A0A7S3P682_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P682_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.050e-10
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   40 PAAEDWHLCCVCMQNTRDAAIVHGATAHQICCFNCAMTIFLRGGDCPCCRRPIDVVVRNFL 222
            PAA+    C  CM+N RDA +VHG T H +CC  CA  +  +G  CP CR  ID+V++++ 
Sbjct:  393 PAAKP---CLCCMENERDATLVHGGTGHIVCCLPCARILQAQGQKCPVCRLDIDLVIKHYF 450          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8585.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE9.380e-2353.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0003F0E7FA2.890e-1343.24E3 ubiquitin-protein ligase Mdm2-like n=1 Tax=Sacc... [more]
A0A6F9DL71_9ASCI6.850e-1351.85E3 ubiquitin-protein ligase Mdm2 n=1 Tax=Phallusia... [more]
A0A6P4YUP8_BRABE4.710e-1247.17Protein Mdm4 n=4 Tax=Branchiostoma TaxID=7737 RepI... [more]
A0A3M6UPB7_POCDA1.530e-1139.44Uncharacterized protein n=2 Tax=Pocillopora damico... [more]
UPI0006B085A34.090e-1147.17E3 ubiquitin-protein ligase Mdm2-like n=1 Tax=Limu... [more]
UPI00109BA2AF5.390e-1141.38uncharacterized protein LOC110244124 isoform X1 n=... [more]
A0A7M5WWR9_9CNID6.970e-1148.08RING-type domain-containing protein n=1 Tax=Clytia... [more]
A0A2B4SU88_STYPI9.920e-1139.44E3 ubiquitin-protein ligase Mdm2 n=3 Tax=Stylophor... [more]
A0A7S3P682_9STRA1.050e-1044.26Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8585contigP-wetherbeei_contig8585:540..764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog10224.XP_006821905.1
Preferred nameMDM4
PFAMsSWIB,zf-C3HC4_3,zf-RanBP
Model size225
Max annot lvl33208|Metazoa
KEGG koko:K06643,ko:K10127
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000122,GO:0000278,GO:0001666,GO:0002027,GO:0003007,GO:0003170,GO:0003171,GO:0003179,GO:0003181,GO:0003197,GO:0003203,GO:0003205,GO:0003230,GO:0003231,GO:0003279,GO:0003281,GO:0003283,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007507,GO:0008016,GO:0008150,GO:0008152,GO:0008270,GO:0008283,GO:0008284,GO:0008285,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010948,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0022402,GO:0022607,GO:0023051,GO:0023052,GO:0030330,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0031647,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033554,GO:0035556,GO:0036211,GO:0036293,GO:0036294,GO:0042127,GO:0042176,GO:0042177,GO:0042221,GO:0042770,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045023,GO:0045786,GO:0045787,GO:0045892,GO:0045930,GO:0045934,GO:0046872,GO:0046914,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0051726,GO:0060255,GO:0060485,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070887,GO:0071156,GO:0071158,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072132,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0140096,GO:1901564,GO:1901796,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902679,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903507,GO:1903522,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
Exons1
Evalue4.73e-14
EggNOG OGs2C54B@1|root,2QQNV@2759|Eukaryota,39R5S@33154|Opisthokonta,3BEE8@33208|Metazoa,3CY9Z@33213|Bilateria
EC2.3.2.27
DescriptionG0 to G1 transition
Cds size225
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.3553195-CDS-P-wetherbeei_contig8585:539..7641683187048.3553195-CDS-P-wetherbeei_contig8585:539..764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8585 540..764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8585.1.1prot_P-wetherbeei_contig8585.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8585 540..764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8585.1.1

>prot_P-wetherbeei_contig8585.1.1 ID=prot_P-wetherbeei_contig8585.1.1|Name=mRNA_P-wetherbeei_contig8585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
SDVSAKIRALHREPAAEDWHLCCVCMQNTRDAAIVHGATAHQICCFNCAM
TIFLRGGDCPCCRRPIDVVVRNFL*
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mRNA from alignment at P-wetherbeei_contig8585:540..764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8585.1.1 ID=mRNA_P-wetherbeei_contig8585.1.1|Name=mRNA_P-wetherbeei_contig8585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig8585:540..764+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGACGTGAGCGCCAAAATTCGGGCCCTTCACCGAGAGCCAGCGGCCGA GGACTGGCACCTCTGCTGCGTCTGCATGCAGAACACACGTGATGCCGCCA TCGTGCACGGAGCGACGGCGCACCAGATCTGCTGCTTCAACTGCGCCATG ACCATCTTCTTGCGCGGCGGCGACTGTCCCTGCTGCCGCCGCCCGATCGA TGTCGTCGTCCGTAACTTCCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8585:540..764+

>mRNA_P-wetherbeei_contig8585.1.1 ID=mRNA_P-wetherbeei_contig8585.1.1|Name=mRNA_P-wetherbeei_contig8585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig8585:540..764+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGACGTGAGCGCCAAAATTCGGGCCCTTCACCGAGAGCCAGCGGCCGA
GGACTGGCACCTCTGCTGCGTCTGCATGCAGAACACACGTGATGCCGCCA
TCGTGCACGGAGCGACGGCGCACCAGATCTGCTGCTTCAACTGCGCCATG
ACCATCTTCTTGCGCGGCGGCGACTGTCCCTGCTGCCGCCGCCCGATCGA
TGTCGTCGTCCGTAACTTCCTCTGA
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