mRNA_P-wetherbeei_contig8448.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8448.1.1
Unique NamemRNA_P-wetherbeei_contig8448.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A1H8P480_9PROT (DNA-binding transcriptional regulator, Lrp family n=2 Tax=unclassified Rhodospirillales TaxID=941843 RepID=A0A1H8P480_9PROT)

HSP 1 Score: 268 bits (684), Expect = 5.160e-90
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1
Query:   10 MISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAALPL 465
            MISLD+IDRRIL HLQK+GRVSNADLA +VGLSSSPCWRRVKALEEAGVIKGY AQVDA+AVGLSVNVF+SVSLSTQVEK+LQAFERAAA RPEVMECYLMTGDSDYLLR+VVPDL+AYERFVMDFTKI GIAQIRSSFALR VKQGAALPL
Sbjct:    1 MISLDAIDRRILDHLQKNGRVSNADLAGQVGLSSSPCWRRVKALEEAGVIKGYAAQVDAKAVGLSVNVFMSVSLSTQVEKALQAFERAAAARPEVMECYLMTGDSDYLLRIVVPDLEAYERFVMDFTKIAGIAQIRSSFALRTVKQGAALPL 152          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A1T4THR3_9HYPH (Transcriptional regulator, AsnC family n=11 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1T4THR3_9HYPH)

HSP 1 Score: 258 bits (659), Expect = 2.720e-86
Identity = 132/152 (86.84%), Postives = 142/152 (93.42%), Query Frame = 1
Query:   10 MISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAALPL 465
            MISLD+IDRRIL  LQ+DGR+SN +LAE+VGLSSSPCWRRVKALEEAGVIKGY A VDA+ VGLSVNVF+SVSLSTQ EKSL+ FERAAA RPEVMECYLMTGDSDYLLR+VVPDL+AYERFVMDFTKIPGIAQIRSSFALRPVKQG ALPL
Sbjct:    1 MISLDAIDRRILEKLQQDGRLSNTELAEKVGLSSSPCWRRVKALEEAGVIKGYAALVDAKTVGLSVNVFMSVSLSTQNEKSLKDFERAAAARPEVMECYLMTGDSDYLLRIVVPDLEAYERFVMDFTKIPGIAQIRSSFALRPVKQGTALPL 152          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A537MXH6_9PROT (Lrp/AsnC family transcriptional regulator (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MXH6_9PROT)

HSP 1 Score: 248 bits (634), Expect = 1.440e-82
Identity = 129/150 (86.00%), Postives = 140/150 (93.33%), Query Frame = 1
Query:   10 MISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAAL 459
            MI+LD+IDRRIL  LQ+DGR+SNADLA++VGLSSSPCWRRVKALEEAGVIKG    +DA+ VGLSVNVF+SVSLSTQ EKSLQAFERAAA RPEVMECYLMTGDSDYLLR+VVPDL+AYERFVMDFTKIPGIAQIRSSFALRPVKQG AL
Sbjct:    1 MITLDAIDRRILERLQQDGRLSNADLADKVGLSSSPCWRRVKALEEAGVIKGL---LDAKTVGLSVNVFMSVSLSTQNEKSLQAFERAAAARPEVMECYLMTGDSDYLLRIVVPDLEAYERFVMDFTKIPGIAQIRSSFALRPVKQGTAL 147          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A5C8PE89_9HYPH (Lrp/AsnC family transcriptional regulator n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C8PE89_9HYPH)

HSP 1 Score: 237 bits (604), Expect = 8.270e-78
Identity = 116/150 (77.33%), Postives = 134/150 (89.33%), Query Frame = 1
Query:   16 SLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAALPL 465
            +LD IDR IL  LQ+DGR+SNADLAE+VGLS+SPCWRRVKALEE G+I+GY A VDA+AVGL V+VF+SVSL+TQV+ +LQ FE+A   RPEVMECYLMTGDSDYLLRVVVPDL+AYERFVMDFT+I G+ QIRSSFALRPVKQG ALP+
Sbjct:    7 ALDGIDRHILESLQRDGRLSNADLAEKVGLSASPCWRRVKALEETGIIRGYVAVVDAKAVGLPVSVFMSVSLTTQVQSALQRFEKAVQQRPEVMECYLMTGDSDYLLRVVVPDLEAYERFVMDFTRIAGVGQIRSSFALRPVKQGTALPM 156          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A2E6Q601_9PROT (ArsR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6Q601_9PROT)

HSP 1 Score: 192 bits (489), Expect = 2.560e-60
Identity = 95/154 (61.69%), Postives = 121/154 (78.57%), Query Frame = 1
Query:   13 ISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPLDR 471
            I++D++D+RIL  +Q++ R+SN DLAERVG+S SPCWRRVK LEEAG+I+ +   VD  AVGL V+VF+ V+L  Q+E +L+ FER    RPEVMECYLMTGD+DYLLRVVV DL AYERF+MD  T+I G+A I SSFAL+ VK   ALP+D+
Sbjct:    4 IAMDAVDQRILAVMQENARISNVDLAERVGISPSPCWRRVKTLEEAGIIQRHVTLVDPAAVGLPVSVFIQVTLERQIETALETFERTVLERPEVMECYLMTGDADYLLRVVVADLAAYERFLMDHLTRINGVASINSSFALKQVKYRTALPVDQ 157          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A3S0R9F3_9PROT (Lrp/AsnC family transcriptional regulator n=2 Tax=Azospirillum TaxID=191 RepID=A0A3S0R9F3_9PROT)

HSP 1 Score: 192 bits (489), Expect = 2.650e-60
Identity = 103/152 (67.76%), Postives = 118/152 (77.63%), Query Frame = 1
Query:   13 ISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPL 465
            I LD IDR+IL  LQ+DGR  N +LAERVGLS SPC RRVKALEEAGVI  Y A VD   V L+VN+FVSVSL  QVE+ L AFE A   RPEV+ECYLM+GD+DYLLRVVVPDL +YERF+ D  T+IPG+A IRSSFAL+ V+   ALPL
Sbjct:    4 IKLDRIDRKILAQLQEDGRQPNNELAERVGLSPSPCLRRVKALEEAGVISRYVALVDPVTVDLAVNIFVSVSLDRQVEERLDAFEAAVMERPEVLECYLMSGDADYLLRVVVPDLASYERFLKDHLTRIPGLAGIRSSFALKQVRYRTALPL 155          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A2E6QHV8_9PROT (ArsR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QHV8_9PROT)

HSP 1 Score: 192 bits (488), Expect = 4.560e-60
Identity = 95/150 (63.33%), Postives = 121/150 (80.67%), Query Frame = 1
Query:   19 LDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPL 465
            LD+IDRRIL  LQ+D R+SN DLA+  G+S SPC RRV+ALEE GVI+GY   +D  AVGL V++FVSVSL  Q+E++L+ FE A ++ PEV+ECYLMTGD+DYLLRVVVPDL AYERF+MD  T++PG++ I+SSFAL+ V   +ALPL
Sbjct:    6 LDAIDRRILAKLQEDARISNVDLAKGAGISPSPCLRRVRALEERGVIRGYVTVLDQTAVGLPVSIFVSVSLERQIERALEEFETAVSSWPEVLECYLMTGDADYLLRVVVPDLSAYERFLMDHLTRVPGVSSIKSSFALKQVSHRSALPL 155          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: UPI001AE8DAE6 (Lrp/AsnC family transcriptional regulator n=1 Tax=Azospirillum picis TaxID=488438 RepID=UPI001AE8DAE6)

HSP 1 Score: 192 bits (487), Expect = 5.330e-60
Identity = 98/152 (64.47%), Postives = 120/152 (78.95%), Query Frame = 1
Query:   16 SLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPLD 468
            +LD IDR+IL  LQ+DGR+ N +LAERVGLS SPC RRVKALEEAGVI  Y A VD  +V L +N+FVSVSL  Q+E+ + AFE A   RPEV+ECYLMTGD+DYLLRV+VPDL +YERF+ D  T+IPG+A IRSSFAL+ V+   +LPL+
Sbjct:    5 NLDRIDRKILSALQEDGRLHNNELAERVGLSPSPCLRRVKALEEAGVISRYVALVDPASVDLQLNIFVSVSLERQIEERIDAFESAVMTRPEVLECYLMTGDADYLLRVMVPDLASYERFLKDHLTRIPGVANIRSSFALKQVRYRTSLPLE 156          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: UPI0015D49CCF (Lrp/AsnC family transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D49CCF)

HSP 1 Score: 191 bits (485), Expect = 1.070e-59
Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = 1
Query:   19 LDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPL 465
            LD IDR IL  LQ+DGR++N+DL++RVGLS SPC RRVKALEE GVI+ Y A VD  AV LSV+VFVSV+L  QVE+ L AFE A    PEV+ECYLMTG++DYLLRVVVPDL AYERF+ D  T++PG+A I+SSFAL+ V+   ALPL
Sbjct:    6 LDRIDRNILALLQQDGRMANSDLSQRVGLSPSPCLRRVKALEETGVIRNYVALVDPAAVDLSVSVFVSVTLERQVEERLDAFEAAVVRWPEVLECYLMTGEADYLLRVVVPDLAAYERFLKDHLTRVPGVASIKSSFALKQVRYNTALPL 155          
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A2E7R9H3_9PROT (ArsR family transcriptional regulator n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7R9H3_9PROT)

HSP 1 Score: 190 bits (483), Expect = 2.240e-59
Identity = 95/151 (62.91%), Postives = 118/151 (78.15%), Query Frame = 1
Query:   19 LDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPLD 468
            LD++DRRIL  LQ+  R+SN DLAE+VG+S SPCWRRVK LE++GVI  + + VD  AVGL V+VF+ V+L  Q+E +L+ FE+    RPEVMECYLMTGDSDYLLRVVV DL AYERF+MD  T++ G+A I+SSFAL+ VK G ALPL 
Sbjct:    6 LDAVDRRILAVLQEHARISNVDLAEQVGISPSPCWRRVKTLEDSGVIAKHVSLVDPAAVGLPVSVFIQVTLERQIETALETFEQTVLARPEVMECYLMTGDSDYLLRVVVADLSAYERFLMDHLTRLNGVASIKSSFALKQVKYGTALPLS 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H8P480_9PROT5.160e-9090.79DNA-binding transcriptional regulator, Lrp family ... [more]
A0A1T4THR3_9HYPH2.720e-8686.84Transcriptional regulator, AsnC family n=11 Tax=Al... [more]
A0A537MXH6_9PROT1.440e-8286.00Lrp/AsnC family transcriptional regulator (Fragmen... [more]
A0A5C8PE89_9HYPH8.270e-7877.33Lrp/AsnC family transcriptional regulator n=2 Tax=... [more]
A0A2E6Q601_9PROT2.560e-6061.69ArsR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A3S0R9F3_9PROT2.650e-6067.76Lrp/AsnC family transcriptional regulator n=2 Tax=... [more]
A0A2E6QHV8_9PROT4.560e-6063.33ArsR family transcriptional regulator n=1 Tax=Rhod... [more]
UPI001AE8DAE65.330e-6064.47Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
UPI0015D49CCF1.070e-5966.00Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
A0A2E7R9H3_9PROT2.240e-5962.91ArsR family transcriptional regulator n=2 Tax=Rhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8448contigP-wetherbeei_contig8448:1871..2344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1205680.CAKO01000002_gene2531
PFAMsAsnC_trans_reg,HTH_24
Model size474
Max annot lvl204441|Rhodospirillales
KEGG koko:K03719
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.54e-89
EggNOG OGsCOG1522@1|root,COG1522@2|Bacteria,1MX7R@1224|Proteobacteria,2VG6E@28211|Alphaproteobacteria,2JT4M@204441|Rhodospirillales
Descriptionhelix_turn_helix ASNC type
Cds size465
COG categoryK
BRITEko00000,ko03000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.0085654-CDS-P-wetherbeei_contig8448:1870..23351683187041.0085654-CDS-P-wetherbeei_contig8448:1870..2335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8448 1871..2335 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.0201817-UTR-P-wetherbeei_contig8448:2335..23441683187041.0201817-UTR-P-wetherbeei_contig8448:2335..2344Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8448 2336..2344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8448.1.1prot_P-wetherbeei_contig8448.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8448 1871..2335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8448.1.1

>prot_P-wetherbeei_contig8448.1.1 ID=prot_P-wetherbeei_contig8448.1.1|Name=mRNA_P-wetherbeei_contig8448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVI
KGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYL
MTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAAL
PLDR*
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mRNA from alignment at P-wetherbeei_contig8448:1871..2344-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8448.1.1 ID=mRNA_P-wetherbeei_contig8448.1.1|Name=mRNA_P-wetherbeei_contig8448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig8448:1871..2344- (Phaeothamnion wetherbeei SAG_119_79)
ATTTTAGGAATGATCTCCCTCGACTCGATCGACCGACGCATACTCGGCCA TCTGCAGAAAGACGGCCGCGTCAGCAACGCCGACCTCGCCGAACGCGTCG GCCTGTCTTCTTCGCCGTGCTGGCGGCGGGTGAAGGCGCTCGAGGAGGCC GGCGTCATCAAGGGCTACACGGCGCAGGTCGACGCGCGTGCGGTTGGCTT GTCGGTCAACGTCTTCGTGAGCGTGTCGCTGTCGACCCAGGTCGAGAAAT CGCTCCAGGCCTTCGAGCGCGCCGCCGCCAACCGGCCCGAGGTCATGGAG TGCTACCTGATGACCGGCGACAGCGACTACCTGCTGCGGGTCGTTGTGCC CGACCTCGACGCCTATGAACGCTTCGTCATGGACTTCACCAAGATCCCCG GCATCGCCCAGATCCGCAGCTCCTTCGCGCTGCGGCCGGTGAAGCAGGGT GCCGCCCTGCCGTTGGACCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8448:1871..2344-

>mRNA_P-wetherbeei_contig8448.1.1 ID=mRNA_P-wetherbeei_contig8448.1.1|Name=mRNA_P-wetherbeei_contig8448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig8448:1871..2344- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTCCCTCGACTCGATCGACCGACGCATACTCGGCCATCTGCAGAA
AGACGGCCGCGTCAGCAACGCCGACCTCGCCGAACGCGTCGGCCTGTCTT
CTTCGCCGTGCTGGCGGCGGGTGAAGGCGCTCGAGGAGGCCGGCGTCATC
AAGGGCTACACGGCGCAGGTCGACGCGCGTGCGGTTGGCTTGTCGGTCAA
CGTCTTCGTGAGCGTGTCGCTGTCGACCCAGGTCGAGAAATCGCTCCAGG
CCTTCGAGCGCGCCGCCGCCAACCGGCCCGAGGTCATGGAGTGCTACCTG
ATGACCGGCGACAGCGACTACCTGCTGCGGGTCGTTGTGCCCGACCTCGA
CGCCTATGAACGCTTCGTCATGGACTTCACCAAGATCCCCGGCATCGCCC
AGATCCGCAGCTCCTTCGCGCTGCGGCCGGTGAAGCAGGGTGCCGCCCTG
CCGTTGGACCGATGA
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