mRNA_P-wetherbeei_contig8435.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8435.1.1
Unique NamemRNA_P-wetherbeei_contig8435.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A835Z759_9STRA (SBDS protein C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z759_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.640e-9
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  439 SKLRCNTCGIGFLDTAAHREHFKTDWHRYNLKMKVR 546
            SKL+CNTC   F DT A+R+HFK+DWHRYNLK+K++
Sbjct:  382 SKLKCNTCAAAFADTTAYRDHFKSDWHRYNLKLKMK 417
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A6H5JHB7_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.230e-8
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  382 ATMGEKDSREAAVAADIPVSK--LRCNTCGIGFLDTAAHREHFKTDWHRYNLKMKVR 546
            AT  ++D+RE     D+  +K  L CNTCG+ F DT AHREH+K+D HRYNLK+K++
Sbjct:  414 ATERDQDAREQG-GGDVGKAKRPLGCNTCGLTFPDTGAHREHYKSDLHRYNLKLKMK 469
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A196SHL3_BLAHN (Ribosome maturation protein SBDS n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SHL3_BLAHN)

HSP 1 Score: 60.8 bits (146), Expect = 1.140e-7
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  412 AAVAADIPVSKLRCNTCGIGFLDTAAHREHFKTDWHRYNLKMK 540
            AA  A +  S+ +C+TC  GF DT A+REHF++DWHR+NLK K
Sbjct:  266 AAEPAALQTSRFKCSTCQAGFQDTGAYREHFRSDWHRFNLKRK 308
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A5B8N2X1_9CHLO (Ribosome maturation protein Sdo1/SBDS n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N2X1_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-7
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  385 TMGEKDSREAAVA--ADIPVSKLRCNTCGIGFLDTAAHREHFKTDWHRYNLKMK 540
            +MG    +  AVA  A   V + +CNTC +GF D+  HREHFK+DWHR NLK K
Sbjct:  312 SMGLTGDQTIAVASAATAVVGRFKCNTCQVGFDDSKQHREHFKSDWHRINLKRK 365
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: F0XZC1_AURAN (C2H2-type domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZC1_AURAN)

HSP 1 Score: 55.5 bits (132), Expect = 2.190e-7
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  445 LRCNTCGIGFLDTAAHREHFKTDWHRYNLKMKV 543
            L CNTCG  F D  AHR+HFK++WHR+NL +K+
Sbjct:    4 LSCNTCGGSFADKQAHRDHFKSEWHRHNLSLKL 36
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A7S3NJM4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJM4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.350e-7
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:  445 LRCNTCGIGFLDTAAHREHFKTDWHRYNLKMKV 543
            L CNTCG  F DTAAHR HF++DWHRYNLK K+
Sbjct:  343 LTCNTCGGSFSDTAAHRCHFRSDWHRYNLKRKL 375
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A7S2W459_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W459_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.480e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  439 SKLRCNTCGIGFLDTAAHREHFKTDWHRYNLKMKV 543
            ++  CNTCG  F   AAHREHFK+DWHRYNLK+K+
Sbjct:  394 TRRSCNTCGGSFSSPAAHREHFKSDWHRYNLKLKM 428
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A6G0WVX6_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVX6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.060e-7
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:  403 SREAAVAADIPVSKLR----CNTCGIGFLDTAAHREHFKTDWHRYNLKMKVR 546
            S  A VAA  P         C+TCG GF DTA +REHF+++WHRYNLK+K +
Sbjct:  292 SAPAPVAAPAPSGSTSGGRPCSTCGGGFADTAQYREHFRSEWHRYNLKLKAK 343
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BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A418BAS8_9STRA (C2H2-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BAS8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.320e-7
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  412 AAVAADIPVSKLR--CNTCGIGFLDTAAHREHFKTDWHRYNLKMKVR 546
            AA A++ P +     C+TCG  F DTA +REHF+++WHRYNLK+K +
Sbjct:  371 AATASNAPAASAGRPCSTCGGAFTDTAVYREHFRSEWHRYNLKLKAK 417
[Close]
BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Match: A0A397EQD1_9STRA (C2H2-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EQD1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.590e-7
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  421 AADIPVSKLRCNTCGIGFLDTAAHREHFKTDWHRYNLKMKVR 546
            AA  PV +  C+TCG  F+DTA +REHF+++WHRYNLK+K +
Sbjct:  422 AAPAPVGRP-CSTCGGAFVDTALYREHFRSEWHRYNLKLKAK 462
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8435.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z759_9STRA4.640e-966.67SBDS protein C-terminal domain-containing protein ... [more]
A0A6H5JHB7_9PHAE2.230e-852.63C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A196SHL3_BLAHN1.140e-755.81Ribosome maturation protein SBDS n=1 Tax=Blastocys... [more]
A0A5B8N2X1_9CHLO1.270e-751.85Ribosome maturation protein Sdo1/SBDS n=1 Tax=Chlo... [more]
F0XZC1_AURAN2.190e-760.61C2H2-type domain-containing protein (Fragment) n=1... [more]
A0A7S3NJM4_9STRA2.350e-772.73Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2W459_9STRA2.480e-765.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0WVX6_9STRA3.060e-751.92C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A418BAS8_9STRA8.320e-751.06C2H2-type domain-containing protein n=2 Tax=Aphano... [more]
A0A397EQD1_9STRA8.590e-757.14C2H2-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8435contigP-wetherbeei_contig8435:457..1314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008878701.1
Preferred nameSBDS
PFAMsSBDS,SBDS_C
Model size556
Max annot lvl2759|Eukaryota
KEGG koko:K10737,ko:K14574
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0001503,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010467,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0019843,GO:0019899,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030282,GO:0030595,GO:0030684,GO:0030687,GO:0031214,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042330,GO:0043009,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0048513,GO:0048534,GO:0048539,GO:0048589,GO:0048731,GO:0048856,GO:0048870,GO:0050896,GO:0050900,GO:0051020,GO:0051179,GO:0051674,GO:0051716,GO:0060326,GO:0060348,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363,GO:1902850,GO:1903047,GO:1990904
Exons2
Evalue2.3e-07
EggNOG OGsCOG1500@1|root,KOG2917@2759|Eukaryota
EC3.6.4.12
Descriptionmature ribosome assembly
Cds size555
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187040.1097872-CDS-P-wetherbeei_contig8435:456..9721683187040.1097872-CDS-P-wetherbeei_contig8435:456..972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8435 457..972 +
1683187040.1255565-CDS-P-wetherbeei_contig8435:1275..13141683187040.1255565-CDS-P-wetherbeei_contig8435:1275..1314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8435 1276..1314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8435.1.1prot_P-wetherbeei_contig8435.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8435 457..1314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8435.1.1

>prot_P-wetherbeei_contig8435.1.1 ID=prot_P-wetherbeei_contig8435.1.1|Name=mRNA_P-wetherbeei_contig8435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
QAAGAAAGGGGDDGEGSPPGKPGGAASTAAAAAASGCGGGGGGGGGGFGG
DAGGGGKGGKKSKKAKRREKEAAEERAAMAAEAATRQEERRRQRRVAAGA
PADAEEASAGADAAASGGETAVASGDAATMGEKDSREAAVAADIPVSKLR
CNTCGIGFLDTAAHREHFKTDWHRYNLKMKVRVA*
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mRNA from alignment at P-wetherbeei_contig8435:457..1314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8435.1.1 ID=mRNA_P-wetherbeei_contig8435.1.1|Name=mRNA_P-wetherbeei_contig8435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=858bp|location=Sequence derived from alignment at P-wetherbeei_contig8435:457..1314+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCAGCAGGAGCCGCAGCGGGCGGCGGGGGTGATGACGGAGAAGGCAG
CCCCCCGGGCAAGCCCGGCGGCGCCGCGTCAACCGCCGCCGCTGCTGCTG
CCAGCGGTTGCGGTGGCGGTGGCGGCGGTGGCGGCGGTGGCTTCGGCGGT
GATGCCGGCGGCGGCGGCAAGGGCGGCAAAAAGTCGAAGAAGGCGAAGCG
CCGCGAGAAGGAGGCGGCGGAGGAGAGGGCGGCCATGGCCGCCGAGGCGG
CGACGCGTCAGGAGGAGAGGCGGCGACAGCGGCGCGTGGCCGCCGGCGCC
CCGGCAGACGCAGAAGAGGCGAGTGCTGGCGCCGACGCTGCCGCATCAGG
TGGAGAGACGGCCGTCGCGTCCGGGGACGCTGCGACGATGGGGGAAAAAG
ATTCGAGAGAGGCGGCAGTCGCAGCGGACATACCGGTGAGCAAGCTTCGG
TGCAACACGTGCGGCATCGGGTTCCTGGACACCGCGGCACATCGCGAGCA
CTTCAAGACGGATTGGGTGAGTAGGCGACAGATGGGTGGGGCTCAGGGCT
CTTTTTATGTGATGGGAATTTAAGAGCGACTTGTGAGCGTTGCCACGGGA
ATATTTTGTTCCTTAATCACTATCCTCTGTGGGCCAACACGGAGACGTGC
TCTTGCGGCTTCGCTCGGATTGCACAATTTTGATGCCTTGGGTTGTGCAA
TTTTAACGTGACCGTCGATACGAATGCGGGTTATCCGGCCAAGTGGCAGC
AGCACCTTACCTGACCGAACAAACTCTTCTCTGTCTCGTGGATCTGCCCG
GCTCGGGTCGCTCTTGCAGCATCGCTACAATCTGAAAATGAAGGTGCGTG
TAGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8435:457..1314+

>mRNA_P-wetherbeei_contig8435.1.1 ID=mRNA_P-wetherbeei_contig8435.1.1|Name=mRNA_P-wetherbeei_contig8435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig8435:457..1314+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCAGCAGGAGCCGCAGCGGGCGGCGGGGGTGATGACGGAGAAGGCAG
CCCCCCGGGCAAGCCCGGCGGCGCCGCGTCAACCGCCGCCGCTGCTGCTG
CCAGCGGTTGCGGTGGCGGTGGCGGCGGTGGCGGCGGTGGCTTCGGCGGT
GATGCCGGCGGCGGCGGCAAGGGCGGCAAAAAGTCGAAGAAGGCGAAGCG
CCGCGAGAAGGAGGCGGCGGAGGAGAGGGCGGCCATGGCCGCCGAGGCGG
CGACGCGTCAGGAGGAGAGGCGGCGACAGCGGCGCGTGGCCGCCGGCGCC
CCGGCAGACGCAGAAGAGGCGAGTGCTGGCGCCGACGCTGCCGCATCAGG
TGGAGAGACGGCCGTCGCGTCCGGGGACGCTGCGACGATGGGGGAAAAAG
ATTCGAGAGAGGCGGCAGTCGCAGCGGACATACCGGTGAGCAAGCTTCGG
TGCAACACGTGCGGCATCGGGTTCCTGGACACCGCGGCACATCGCGAGCA
CTTCAAGACGGATTGGCATCGCTACAATCTGAAAATGAAGGTGCGTGTAG
CGTGA
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