mRNA_P-wetherbeei_contig8407.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8407.2.1
Unique NamemRNA_P-wetherbeei_contig8407.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A672HUD6_SALFA (Reverse transcriptase domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HUD6_SALFA)

HSP 1 Score: 107 bits (267), Expect = 1.900e-22
Identity = 55/134 (41.04%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   13 PRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQINGRAAAP 414
            P++G+   + N+RP++LL VDYK+L+K  +  L   +   I  DQT  VPGR +  N+ L+RD+   L   +S D  A ++ +D EKA+D VEH FLWR +E+ G    F+  +Q+LYR   + L+ING   AP
Sbjct:   64 PKKGNLQDIKNWRPVSLLCVDYKLLSKVLASRLGRAMEQVIHRDQTYCVPGRSMVDNVHLIRDV---LEVSSSLDIDAGLISVDQEKAFDRVEHSFLWRVMESFGFSAGFIAKIQVLYRDIESVLKINGSLCAP 194          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A060SPQ7_PYCCI (RNase H type-1 domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPQ7_PYCCI)

HSP 1 Score: 110 bits (274), Expect = 5.140e-22
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   10 WPRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQING 399
            W  +G+   + NYRPI +LN DYK+L K  +  LAL  P+ + P Q GFVPGR +     L R +   L A+A K+   AI+ LD EKAYD + H++LWR LE  G+P SFV  ++ LY  A  ++ +NG
Sbjct:  282 WKEKGEKTKVVNYRPITVLNTDYKLLTKIMAVKLALAAPSIVHPSQAGFVPGRRLRDQTQLARMM--MLWAEA-KEENGAIVALDQEKAYDKISHDYLWRVLERFGIPASFVNIIKSLYASAETSIMVNG 408          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A060SP60_PYCCI (RNase H type-1 domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SP60_PYCCI)

HSP 1 Score: 110 bits (274), Expect = 5.190e-22
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   10 WPRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQING 399
            W  +G+   + NYRPI +LN DYK+L K  +  LAL  P+ + P Q GFVPGR +     L R +   L A+A K+   AI+ LD EKAYD + H++LWR LE  G+P SFV  ++ LY  A  ++ +NG
Sbjct:  132 WKEKGEKTKVVNYRPITVLNTDYKLLTKIMAVQLALAAPSIVHPSQAGFVPGRRLRDQTQLARMM--MLWAEA-KEENGAIVALDQEKAYDKISHDYLWRVLERFGIPASFVNIIKSLYASAETSIMVNG 258          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A665WRW9_ECHNA (Reverse transcriptase domain-containing protein n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665WRW9_ECHNA)

HSP 1 Score: 104 bits (260), Expect = 5.280e-22
Identity = 56/134 (41.79%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   13 PRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQINGRAAAP 414
            P++GD   L N+RP++LL  DYK+LAKA ++ L   +   +  DQ+  VPGR I+ N+ L+R +   L    S D    ++ +D EKA+D VEH++LW+ L A G    F+  +QLLYR  ++ L+ING  AAP
Sbjct:   71 PKKGDLQDLRNWRPVSLLCGDYKVLAKALARRLREVMAEVVHVDQSYCVPGRTISDNVTLIRHV---LELSGSLDMDTGLISIDQEKAFDRVEHQYLWQTLCAFGFSPGFIAGIQLLYRDVASILKINGGLAAP 201          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: E2LBP9_MONPE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LBP9_MONPE)

HSP 1 Score: 101 bits (251), Expect = 3.390e-21
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = 1
Query:   16 RRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQING 399
            ++G+   +ANYRPI+LLN DYKI  KA +  L+  +   + PDQ GF+PGR+I  +I L + +       A       I+ LD EKAYD +EHE+LWR L    LP+ F+  V+ LY  A   + ING
Sbjct:   76 KKGERAEIANYRPISLLNTDYKIFTKALTIKLSKVVTELVHPDQAGFIPGRNIYDHIWLSKRVIEIAEEDAQN---GVIIALDQEKAYDRIEHEYLWRTLRTFNLPERFINTVKSLYEDAHTYVMING 200          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A060SHR8_PYCCI (Reverse transcriptase domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SHR8_PYCCI)

HSP 1 Score: 107 bits (267), Expect = 3.620e-21
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   10 WPRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQING 399
            W  +G+   + NYRPI +LN DYK+L K  +  LA   P  + P Q GFVPGR +     L R +   L A+A K+   AI+ LD EKAYD + H++LWR LE  G+P+ FV  V+ LY  A  ++ +NG
Sbjct:  314 WKEKGEKTKVVNYRPITVLNTDYKLLTKIMAVKLAAAAPNIVHPAQAGFVPGRKLRDQTQLARMM--MLWAEA-KEVNGAIVALDQEKAYDKIAHDYLWRVLERFGIPELFVTTVKCLYANAETSVMVNG 440          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A060SQU0_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SQU0_PYCCI)

HSP 1 Score: 107 bits (267), Expect = 4.440e-21
Identity = 55/130 (42.31%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   10 WPRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQING 399
            W  +G+   + NYRPI +LN DYK+L K  +  LA   P+ + P Q GFVPGR +     L R +   L A+A K+   AI+ LD EKAYD + H++LWR LE  G+P+ F+  V+ LY  A  ++ +NG
Sbjct:  510 WKEKGEKTKVVNYRPITVLNTDYKLLTKIMAVKLAAAAPSIVHPAQAGFVPGRKLRDQTQLARMM--MLWAEA-KEVNGAIVALDQEKAYDKIAHDYLWRVLERFGIPEPFITMVKSLYANAETSVMVNG 636          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A672HKG1_SALFA (Reverse transcriptase domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HKG1_SALFA)

HSP 1 Score: 107 bits (266), Expect = 5.400e-21
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 1
Query:   13 PRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQINGRAAAP 414
            P++G+   + N+RP++LL VDYK+L+K  +  L   +   I  DQT  VPGR +  NI L+RD+   L   +S D  A  + +D EKA+D VEH FLWR +E+ G    F+  +Q+LYR   + L+ING   AP
Sbjct:  517 PKKGNLQDIKNWRPVSLLCVDYKLLSKVLASRLGRAMEQVIHRDQTNCVPGRSMVDNIHLIRDV---LEVSSSLDIDAGQISVDQEKAFDRVEHSFLWRVMESFGFSAGFIAKIQVLYRDIESVLKINGSLCAP 647          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A673YTB5_SALTR (Reverse transcriptase domain-containing protein n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673YTB5_SALTR)

HSP 1 Score: 102 bits (254), Expect = 8.890e-21
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 1
Query:   13 PRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQINGRAAAP 414
            P++GD   + N+RP+ALL  DYKIL+KA S  L   +   I  DQ+  VPGR I  NI L+RD    L    +    A ++ +D EKA+D VEH++LW  LEA G    F++ ++++Y    + L++NG  +AP
Sbjct:   48 PKKGDPREVKNWRPVALLCTDYKILSKALSNRLREVMGQIIHTDQSYCVPGRQIGDNISLIRDF---LDVSRAIGLDAGLISIDQEKAFDRVEHQYLWHTLEAFGFSSGFIVMIEVIYGDIESVLKVNGGLSAP 178          
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Match: A0A388M631_CHABU (Reverse transcriptase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M631_CHABU)

HSP 1 Score: 105 bits (261), Expect = 1.420e-20
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   16 RRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQTGFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEFLWRALEARGLPKSFVLDVQLLYRGASATLQING 399
            ++GD   + N+RP++LL+  YK+ AK  +  L   LP  + P QTGFVP R I TN+I++R++   L      D   A+L LDFEKAYD V   FL R +E RG+   F L VQ L   A+AT+QING
Sbjct:  347 KKGDPMEIRNWRPVSLLSAPYKLYAKVLANRLTEVLPDLVHPTQTGFVPTRQILTNVIMVREV---LRRAEESDPPLAVLLLDFEKAYDRVRWGFLLRGMEKRGIGPRFRLAVQDLLGSATATVQING 471          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8407.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A672HUD6_SALFA1.900e-2241.04Reverse transcriptase domain-containing protein n=... [more]
A0A060SPQ7_PYCCI5.140e-2243.85RNase H type-1 domain-containing protein n=1 Tax=P... [more]
A0A060SP60_PYCCI5.190e-2243.85RNase H type-1 domain-containing protein n=1 Tax=P... [more]
A0A665WRW9_ECHNA5.280e-2241.79Reverse transcriptase domain-containing protein n=... [more]
E2LBP9_MONPE3.390e-2142.19Reverse transcriptase domain-containing protein (F... [more]
A0A060SHR8_PYCCI3.620e-2143.08Reverse transcriptase domain-containing protein n=... [more]
A0A060SQU0_PYCCI4.440e-2142.31Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A672HKG1_SALFA5.400e-2141.79Reverse transcriptase domain-containing protein n=... [more]
A0A673YTB5_SALTR8.890e-2140.30Reverse transcriptase domain-containing protein n=... [more]
A0A388M631_CHABU1.420e-2045.31Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8407contigP-wetherbeei_contig8407:874..2199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog69293.ENSGACP00000000161
PFAMsExo_endo_phos,RVT_1
Model size1326
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.47e-23
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39SG3@33154|Opisthokonta,3CQ8S@33208|Metazoa,3E6E3@33213|Bilateria,48QB5@7711|Chordata,49KX3@7742|Vertebrata,4A8SK@7898|Actinopterygii
DescriptionEndonuclease/Exonuclease/phosphatase family
Cds size486
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.7323983-UTR-P-wetherbeei_contig8407:873..17131683187038.7323983-UTR-P-wetherbeei_contig8407:873..1713Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8407 874..1713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.7458527-CDS-P-wetherbeei_contig8407:1713..21991683187038.7458527-CDS-P-wetherbeei_contig8407:1713..2199Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8407 1714..2199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8407.2.1prot_P-wetherbeei_contig8407.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8407 1714..2199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8407.2.1

>prot_P-wetherbeei_contig8407.2.1 ID=prot_P-wetherbeei_contig8407.2.1|Name=mRNA_P-wetherbeei_contig8407.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
SSCWPRRGDSFALANYRPIALLNVDYKILAKAWSQTLALWLPAAIDPDQT
GFVPGRDIATNIILLRDLAAQLGAQASKDFTAAILFLDFEKAYDTVEHEF
LWRALEARGLPKSFVLDVQLLYRGASATLQINGRAAAPASTSGAGAAAGL
PALAAAFRSRA*
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mRNA from alignment at P-wetherbeei_contig8407:874..2199-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8407.2.1 ID=mRNA_P-wetherbeei_contig8407.2.1|Name=mRNA_P-wetherbeei_contig8407.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1326bp|location=Sequence derived from alignment at P-wetherbeei_contig8407:874..2199- (Phaeothamnion wetherbeei SAG_119_79)
TCATCCTGCTGGCCAAGGCGGGGGGACAGCTTCGCCCTGGCCAACTATCG GCCGATTGCGCTGCTCAATGTCGACTACAAGATCTTGGCCAAGGCGTGGT CGCAGACGCTGGCGCTGTGGCTGCCCGCGGCCATCGACCCAGACCAGACT GGGTTCGTGCCGGGCCGCGACATCGCCACCAACATCATCCTGCTGCGGGA CCTGGCAGCTCAGCTCGGCGCTCAGGCAAGTAAGGACTTTACGGCGGCCA TTCTGTTCTTGGACTTTGAAAAGGCGTACGACACGGTAGAGCATGAATTC CTGTGGCGTGCGCTCGAGGCGAGGGGCCTCCCAAAGAGCTTTGTGCTCGA CGTTCAGCTGCTGTATCGTGGGGCCTCGGCGACGCTCCAGATCAACGGCC GGGCCGCTGCCCCTGCCTCTACTTCTGGGGCGGGGGCTGCGGCAGGGCTG CCCGCTCTCGCCGCCGCTTTTCGTTCTCGTGCTTGAGTGTCTCCTGGATG TGCTGGGGGAAGATGTAGAGCTGAAGGGAGTGCTCCTGGAAGGCGGGCCG AGAAGGGGGGTGGGCGGAGCCGAGGCGACGGAGGCGGATGTGGCTACCGA GGCCGGCCGTCGACTCTGCGCCTCCGCTTTCGCCGACGACACCACTCTAG CCCTTGGCGACGGCGACCTCGACCGTGCCGTCAGCCACCTGGAGCTGTTT GCCACGGCATCAGGGCTTCGAGTCAACGCCGGCAAGTCTGCTCTGTGGCT GTTTGGCGACGACAGTCATGGTACGTTTCGCATCCGCGGCGGCGGGGGCC TAGCGGCAACGGCAGCGTTGGAGGCAGCGGTGGCAGCTGTCGGGCTGCGC GGTGCTGCCCCTTCCCGGCGATGCCGACGGGAGGCGCCGGGAGCGCCGTT CGGGTGCTGGGGGTCATGATGGGGCCTGGGGCGACCGACGCCGACACATG GCAGCGACTGGTGGAAACGGTGTCTGCCCGCGTCCAGTTCTGGGGGCGGG TGGCGCTGTCAATGCACTCGCGGGGGGTCGTCGCCAACTCGCTCATCTCT ACAACGCTGGCCTACGTCGGAACCGTGGTGGCGCTGCCACCTGCGGTAGT ACAACCCTGCGTAACCTTGTGCTAGGCTTTGTGGCAAGGGGCCGACGGAG TGCTGGGGGCGGCGGGCAGGCGACGGGCGGTTTCGGCGTGCCCACGCGCG CCGACCTGCTCTCGCCGCTGCACCTGGGCGGCCTCGGCGTCCGAGATCCG GCGCTCTGGGCGATGGCGGGGCAGCAGCGGATGCTGCTGCGTTTCGCAGC CGCCTGGAAAGCCGACGGGCCGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8407:874..2199-

>mRNA_P-wetherbeei_contig8407.2.1 ID=mRNA_P-wetherbeei_contig8407.2.1|Name=mRNA_P-wetherbeei_contig8407.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig8407:874..2199- (Phaeothamnion wetherbeei SAG_119_79)
TCATCCTGCTGGCCAAGGCGGGGGGACAGCTTCGCCCTGGCCAACTATCG
GCCGATTGCGCTGCTCAATGTCGACTACAAGATCTTGGCCAAGGCGTGGT
CGCAGACGCTGGCGCTGTGGCTGCCCGCGGCCATCGACCCAGACCAGACT
GGGTTCGTGCCGGGCCGCGACATCGCCACCAACATCATCCTGCTGCGGGA
CCTGGCAGCTCAGCTCGGCGCTCAGGCAAGTAAGGACTTTACGGCGGCCA
TTCTGTTCTTGGACTTTGAAAAGGCGTACGACACGGTAGAGCATGAATTC
CTGTGGCGTGCGCTCGAGGCGAGGGGCCTCCCAAAGAGCTTTGTGCTCGA
CGTTCAGCTGCTGTATCGTGGGGCCTCGGCGACGCTCCAGATCAACGGCC
GGGCCGCTGCCCCTGCCTCTACTTCTGGGGCGGGGGCTGCGGCAGGGCTG
CCCGCTCTCGCCGCCGCTTTTCGTTCTCGTGCTTGA
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