mRNA_P-wetherbeei_contig835.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A835YUZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ7_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.480e-24 Identity = 58/126 (46.03%), Postives = 71/126 (56.35%), Query Frame = 2
Query: 80 TCRGLNVFATQRDGSSLNRLSMKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLFE 457
TC + +QR S L S RLL+ PY LP LDGV GR +YA P +GEAVY V G +A+W G P + FG F+ TF ARN L R VRF++QQAIL+DI LI+ L E
Sbjct: 47 TCSTIGQRGSQRRTSGLCMAS-----DDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLE 167
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S0PYH6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYH6_9EUKA) HSP 1 Score: 94.7 bits (234), Expect = 6.150e-19 Identity = 49/98 (50.00%), Postives = 58/98 (59.18%), Query Frame = 2
Query: 164 DVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLFE 457
+V DR+ TLPY LP LDG YG Y+Y PG GE V V +AL++ P FIGL+ RN L R VRFN+QQA+LLDI LII LF
Sbjct: 40 EVPAVDRVFGTLPYILPVLDGFGYGIYVYQNVPGAGE-VAGVIAPLVALFQSLPFAGIVLFIGLSLFTRNAGLSRMVRFNIQQALLLDIALIIPGLFS 136
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S0GK24_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GK24_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 7.500e-19 Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 2
Query: 131 NRLSMKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNL 451
N+ + ++++ DR+LS LPY +P LDG YG+Y++ L P LG A + G A++ P AFIGL+ L+RN LPR VRFN+QQA++LDI LI+ +L
Sbjct: 3 NKKYLHMSNNSEIEGTDRVLSCLPYLIPLLDGERYGKYLFYLVPALGMADSILLGPFKAIYSLIPFAQLIAFIGLSVLSRNPDLPRPVRFNMQQALILDITLIVPSL 109
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S0JI91_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI91_9EUKA) HSP 1 Score: 93.6 bits (231), Expect = 2.050e-18 Identity = 49/93 (52.69%), Postives = 57/93 (61.29%), Query Frame = 2
Query: 179 DRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLFE 457
DRL TLPY LP LDG YG YIY PG +A +V +AL++ P FIGL+F RN L R VRFN+QQA+LLDI LII LF
Sbjct: 56 DRLFGTLPYLLPSLDGFGYGAYIYQNVPGAAQAAGAV-APFVALFQSLPFAGLVLFIGLSFFTRNAGLSRLVRFNIQQALLLDIALIIPGLFS 147
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A1E7FL46_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL46_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 6.370e-18 Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 2
Query: 128 LNRLSMKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNL 451
L+ L M + +++ DR+LS LPY +P LDG YG+Y++ L P LG A V G A++ P AFIGL+ L+RN +PR VRFN+QQA++LDI LI +L
Sbjct: 65 LHNLHMSNNS--EIEGTDRVLSCLPYLIPLLDGDRYGKYLFYLVPALGMADSIVLGPFKAIYSVIPFAQLIAFIGLSVLSRNPDIPRPVRFNIQQALILDIALIFPSL 170
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A5J4YN77_PORPP (Tic20 family protein Ycf60 n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN77_PORPP) HSP 1 Score: 90.9 bits (224), Expect = 4.100e-17 Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 2
Query: 50 RAAACRGVPETCRGLNVFATQRD------GSSLNRLSMKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLA-RNQSLPRFVRFNVQQAILLDIGLIICNLFE 457
RAAA G C G++ A R GSS+ + M G DR+L TLPY +P LD + YG+Y++ P V + +++GTP +AFG F+ L L RNQ++PRF+RFN QQAILLDI II NLF
Sbjct: 46 RAAASAGHGAVC-GVSGPARTRSRTHARVGSSVT-MQMWGRGGGKPGPIDRVLGTLPYLVPLLDSLVYGKYVFEKVP-YSTVVLGPLVPLLEVYRGTPFLAFGIFLALFILVVRNQNVPRFIRFNTQQAILLDILTIIPNLFN 185
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S2XVV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV7_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.980e-15 Identity = 52/151 (34.44%), Postives = 84/151 (55.63%), Query Frame = 2
Query: 95 NVFATQRDGSSLNRL---SMKKEAGTD--VDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLF-----EVRFTGRQVGKN-VFFSLFSS 514
N F T ++L+R ++ K A D V I +R+ + LPYALP D +++GR+I+A P L E + G +++G P + F+ + +R S+PRF RF++QQA+L+DI LI LF E+ + + N VF++ F+S
Sbjct: 37 NYFKTYNSQANLHRAQSSNVMKMAQDDESVPIDERIFAILPYALPLSDSIEFGRFIFAEFPLLRELLDIFIGIFYDIYRGVPFIGLLIFLAFSVASRTPSIPRFARFSIQQALLIDIALIFPQLFGGLAKELPLSVVEPATNFVFYAAFAS 187
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S4ES88_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ES88_CHRCT) HSP 1 Score: 84.3 bits (207), Expect = 5.310e-15 Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2
Query: 179 DRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLF 454
+R+L+TLPY LP +DG YG Y+Y P +G + F +A ++ P FIG++ RN +L RFVRFN+QQA+LLDI LI+ LF
Sbjct: 74 ERVLATLPYVLPAIDGFAYGLYVYQNVPPIGAIAGAAF-PFVASFESIPFGGLVFFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLF 164
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: UPI0003477D13 (hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI0003477D13) HSP 1 Score: 82.0 bits (201), Expect = 8.410e-15 Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 2
Query: 173 IADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTF-LARNQSLPRFVRFNVQQAILLDIGLIICNL 451
++DR+ ++LPY LP +DG+D+GR+++ PGL + V+ I ++ G P F F+ L + RN+++ F+RFN QAILLDI LI+C L
Sbjct: 9 VSDRIFASLPYLLPLIDGLDFGRFLFDQFPGL-QLVFMPLLPLIQIYSGIPFAGFIIFLALYLGVVRNENISHFIRFNTMQAILLDIILILCGL 101
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: D7G3C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C5_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 2.480e-14 Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 2
Query: 158 GTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNL 451
G + +R L T+ Y LP LDG+D GR ++ P LG V+ V +A+W P + FI L R Q RF+RFNVQQAIL+DI ++ L
Sbjct: 9 GKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGL 106 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig835.3.3 >prot_P-wetherbeei_contig835.3.3 ID=prot_P-wetherbeei_contig835.3.3|Name=mRNA_P-wetherbeei_contig835.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp MKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFback to top mRNA from alignment at P-wetherbeei_contig835:1298..3310+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig835.3.3 ID=mRNA_P-wetherbeei_contig835.3.3|Name=mRNA_P-wetherbeei_contig835.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2013bp|location=Sequence derived from alignment at P-wetherbeei_contig835:1298..3310+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig835:1298..3310+ >mRNA_P-wetherbeei_contig835.3.3 ID=mRNA_P-wetherbeei_contig835.3.3|Name=mRNA_P-wetherbeei_contig835.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig835:1298..3310+ (Phaeothamnion wetherbeei SAG_119_79)back to top |