mRNA_P-wetherbeei_contig835.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig835.3.3
Unique NamemRNA_P-wetherbeei_contig835.3.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A835YUZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.480e-24
Identity = 58/126 (46.03%), Postives = 71/126 (56.35%), Query Frame = 2
Query:   80 TCRGLNVFATQRDGSSLNRLSMKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLFE 457
            TC  +    +QR  S L   S             RLL+  PY LP LDGV  GR +YA  P +GEAVY V G  +A+W G P + FG F+  TF ARN  L R VRF++QQAIL+DI LI+  L E
Sbjct:   47 TCSTIGQRGSQRRTSGLCMAS-----DDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLE 167          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S0PYH6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYH6_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 6.150e-19
Identity = 49/98 (50.00%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  164 DVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLFE 457
            +V   DR+  TLPY LP LDG  YG Y+Y   PG GE V  V    +AL++  P      FIGL+   RN  L R VRFN+QQA+LLDI LII  LF 
Sbjct:   40 EVPAVDRVFGTLPYILPVLDGFGYGIYVYQNVPGAGE-VAGVIAPLVALFQSLPFAGIVLFIGLSLFTRNAGLSRMVRFNIQQALLLDIALIIPGLFS 136          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S0GK24_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GK24_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.500e-19
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  131 NRLSMKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNL 451
            N+  +     ++++  DR+LS LPY +P LDG  YG+Y++ L P LG A   + G   A++   P     AFIGL+ L+RN  LPR VRFN+QQA++LDI LI+ +L
Sbjct:    3 NKKYLHMSNNSEIEGTDRVLSCLPYLIPLLDGERYGKYLFYLVPALGMADSILLGPFKAIYSLIPFAQLIAFIGLSVLSRNPDLPRPVRFNMQQALILDITLIVPSL 109          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S0JI91_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI91_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 2.050e-18
Identity = 49/93 (52.69%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  179 DRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLFE 457
            DRL  TLPY LP LDG  YG YIY   PG  +A  +V    +AL++  P      FIGL+F  RN  L R VRFN+QQA+LLDI LII  LF 
Sbjct:   56 DRLFGTLPYLLPSLDGFGYGAYIYQNVPGAAQAAGAV-APFVALFQSLPFAGLVLFIGLSFFTRNAGLSRLVRFNIQQALLLDIALIIPGLFS 147          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A1E7FL46_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL46_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.370e-18
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 2
Query:  128 LNRLSMKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNL 451
            L+ L M   +  +++  DR+LS LPY +P LDG  YG+Y++ L P LG A   V G   A++   P     AFIGL+ L+RN  +PR VRFN+QQA++LDI LI  +L
Sbjct:   65 LHNLHMSNNS--EIEGTDRVLSCLPYLIPLLDGDRYGKYLFYLVPALGMADSIVLGPFKAIYSVIPFAQLIAFIGLSVLSRNPDIPRPVRFNIQQALILDIALIFPSL 170          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A5J4YN77_PORPP (Tic20 family protein Ycf60 n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN77_PORPP)

HSP 1 Score: 90.9 bits (224), Expect = 4.100e-17
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 2
Query:   50 RAAACRGVPETCRGLNVFATQRD------GSSLNRLSMKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLA-RNQSLPRFVRFNVQQAILLDIGLIICNLFE 457
            RAAA  G    C G++  A  R       GSS+  + M    G      DR+L TLPY +P LD + YG+Y++   P     V       + +++GTP +AFG F+ L  L  RNQ++PRF+RFN QQAILLDI  II NLF 
Sbjct:   46 RAAASAGHGAVC-GVSGPARTRSRTHARVGSSVT-MQMWGRGGGKPGPIDRVLGTLPYLVPLLDSLVYGKYVFEKVP-YSTVVLGPLVPLLEVYRGTPFLAFGIFLALFILVVRNQNVPRFIRFNTQQAILLDILTIIPNLFN 185          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S2XVV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.980e-15
Identity = 52/151 (34.44%), Postives = 84/151 (55.63%), Query Frame = 2
Query:   95 NVFATQRDGSSLNRL---SMKKEAGTD--VDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLF-----EVRFTGRQVGKN-VFFSLFSS 514
            N F T    ++L+R    ++ K A  D  V I +R+ + LPYALP  D +++GR+I+A  P L E +    G    +++G P +    F+  +  +R  S+PRF RF++QQA+L+DI LI   LF     E+  +  +   N VF++ F+S
Sbjct:   37 NYFKTYNSQANLHRAQSSNVMKMAQDDESVPIDERIFAILPYALPLSDSIEFGRFIFAEFPLLRELLDIFIGIFYDIYRGVPFIGLLIFLAFSVASRTPSIPRFARFSIQQALLIDIALIFPQLFGGLAKELPLSVVEPATNFVFYAAFAS 187          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: A0A7S4ES88_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ES88_CHRCT)

HSP 1 Score: 84.3 bits (207), Expect = 5.310e-15
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  179 DRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNLF 454
            +R+L+TLPY LP +DG  YG Y+Y   P +G    + F   +A ++  P      FIG++   RN +L RFVRFN+QQA+LLDI LI+  LF
Sbjct:   74 ERVLATLPYVLPAIDGFAYGLYVYQNVPPIGAIAGAAF-PFVASFESIPFGGLVFFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLF 164          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: UPI0003477D13 (hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI0003477D13)

HSP 1 Score: 82.0 bits (201), Expect = 8.410e-15
Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  173 IADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTF-LARNQSLPRFVRFNVQQAILLDIGLIICNL 451
            ++DR+ ++LPY LP +DG+D+GR+++   PGL + V+      I ++ G P   F  F+ L   + RN+++  F+RFN  QAILLDI LI+C L
Sbjct:    9 VSDRIFASLPYLLPLIDGLDFGRFLFDQFPGL-QLVFMPLLPLIQIYSGIPFAGFIIFLALYLGVVRNENISHFIRFNTMQAILLDIILILCGL 101          
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Match: D7G3C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.480e-14
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  158 GTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVFGSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLIICNL 451
            G    + +R L T+ Y LP LDG+D GR ++   P LG  V+ V    +A+W   P +    FI L    R Q   RF+RFNVQQAIL+DI  ++  L
Sbjct:    9 GKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGL 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig835.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUZ7_9STRA1.480e-2446.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0PYH6_9EUKA6.150e-1950.00Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0GK24_9STRA7.500e-1943.93Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S0JI91_9EUKA2.050e-1852.69Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A1E7FL46_9STRA6.370e-1845.37Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A5J4YN77_PORPP4.100e-1741.96Tic20 family protein Ycf60 n=2 Tax=Porphyridium pu... [more]
A0A7S2XVV7_9STRA1.980e-1534.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4ES88_CHRCT5.310e-1545.65Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
UPI0003477D138.410e-1541.49hypothetical protein n=1 Tax=Oscillatoria sp. PCC ... [more]
D7G3C5_ECTSI2.480e-1440.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig835contigP-wetherbeei_contig835:1298..3310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog88036.EFJ17591
PFAMsTIC20
Model size1405
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons3
Evalue1.28e-17
EggNOG OGs2BYWW@1|root,2QUSD@2759|Eukaryota,37QHT@33090|Viridiplantae,3GI48@35493|Streptophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_002820.1
Descriptiontic 20-ii
Cds size510
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.108427-UTR-P-wetherbeei_contig835:1297..14391683187035.108427-UTR-P-wetherbeei_contig835:1297..1439Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig835 1298..1439 +
1683187035.1518703-UTR-P-wetherbeei_contig835:2557..33101683187035.1518703-UTR-P-wetherbeei_contig835:2557..3310Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig835 2558..3310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.1228251-CDS-P-wetherbeei_contig835:1439..15371683187035.1228251-CDS-P-wetherbeei_contig835:1439..1537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig835 1440..1537 +
1683187035.132694-CDS-P-wetherbeei_contig835:1870..21671683187035.132694-CDS-P-wetherbeei_contig835:1870..2167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig835 1871..2167 +
1683187035.1419537-CDS-P-wetherbeei_contig835:2442..25571683187035.1419537-CDS-P-wetherbeei_contig835:2442..2557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig835 2443..2557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig835.3.3prot_P-wetherbeei_contig835.3.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig835 1440..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig835.3.3

>prot_P-wetherbeei_contig835.3.3 ID=prot_P-wetherbeei_contig835.3.3|Name=mRNA_P-wetherbeei_contig835.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MKKEAGTDVDIADRLLSTLPYALPFLDGVDYGRYIYALAPGLGEAVYSVF
GSTIALWKGTPLVAFGAFIGLTFLARNQSLPRFVRFNVQQAILLDIGLII
CNLFEVRFTGRQVGKNVFFSLFSSGSPTLRLRGPSGRFRREARSRSPTSS
SCASPLPSHTASSRTPRAR*
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mRNA from alignment at P-wetherbeei_contig835:1298..3310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig835.3.3 ID=mRNA_P-wetherbeei_contig835.3.3|Name=mRNA_P-wetherbeei_contig835.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2013bp|location=Sequence derived from alignment at P-wetherbeei_contig835:1298..3310+ (Phaeothamnion wetherbeei SAG_119_79)
TCCAGCGGCGCCACGAGGAAGTAGCGTTGTCTTCCTGCGACGAAGTACTC GGGCGGCAGCATGCCGAGGAGTGCCGGAAACGTGCAGAGGGTTGAACGTT TTCGCAACACAAAGAGATGGGAGCTCGCTGAATCGCCTGAGTATGAAGAA GGAAGCGGGCACCGATGTAGACATCGCAGATCGGCTCCTGTCGACCCTGC CGTACGCCCTGCCATTTTTAGACGGAGTGGACTACGGAAGGTGCGTTTCT TGCTTTATTTCTGGTCAAACACGTTTCTCGCAGAGGGCTGCGGTCTCCGT CAGCACCTCCTTGGCTTCCACGTGTGCTTTTATAGTCCTTTACCAGCCTT CCTGTTCCGCGTGTTGACACGCTCCTCCCTTGCGATTCACTTCCTTTCTA TTTCGTGCGCTGCTGTTTTGATAGCCGCAAGAGCCCATCTCGAAGTGACT TTGGATCACCCAGACTCACGAATCTCTAAACTCTGCCGTCAAACTGAACT CGCACACACCTGCTCTGCCCAATCACATTCCCATCGTCTCGCCGACCCCT CCTGCATGTCCTCCTGACGGCAGGTACATCTATGCCCTCGCACCGGGGCT GGGCGAGGCCGTCTACTCCGTGTTTGGATCGACCATTGCTCTCTGGAAAG GGACGCCGCTTGTCGCATTCGGAGCGTTCATTGGCTTGACCTTTCTGGCG CGCAACCAGAGCCTGCCACGCTTTGTGCGCTTCAACGTACAACAGGCCAT CCTGCTCGACATCGGGCTGATCATTTGCAATCTTTTTGAGGTACGTTTTA CTGGTCGACAGGTGGGGAAAAACGTGTTCTTTTCGCTCTTTTCTTCCGGA TCACCGACGCTCCGATTGCGGCGACAGAGCTTATCTTGCCGGGTATTTGG CTCGTCTTCTTTTTGCGTGCTCTTCTCCCGGGTGTTGATGTTGTCTCGGT TTGTCTTCTTCATTCGGGCCCTTTGGTGTTGTAGCGACAGCGTCCCTTTC CTCTCTAGAGAATGTGAACTGTTTCGTTTGCCATTGACGAAAAGACAAAC AATGAGATTCATGGATCATTGTGTCCGCCGGCCTTTTCACGTAATCTTCA AACCCTGCTTCGGCTTCTTTCCTTCGCCGCGTCGTCTGCCTGCAGGGGGC CATCCGGGCGGTTTCGCCGGGAGGCACGGAGCCGTTCACCAACTTCATCT TCCTGTGCCTCGCCACTTCCATCGCATACAGCATCTTCGAGAACGCCCAG GGCAAGGTGATGCCCTATTTTGTCTCCTCGTCAGCAGTTCCACTTCTCTG TTCATTTTCTGCTTTGTCATGTTCTTGATCAGAGCGGGACGAGTCGGAAT CCTTTCGGAATGCTCTCTTTGTATTACAAGAGACATGGCAGCATGAACGA CCTATCGCCGATGTGATCCAGCGCTGTGTGTGCAGTTCTTTTCTGCTTTT CTGAGACCGCTTTTGCCTGGAGGGCTGAGTGATGTGTTTCGTCCCTCTCC CCCTTACACGATTGTTCGGTTCCGTTCGTCAGGTGCCCAATCAAATCCCA ATTGTCAGCGATGCCGCGGAGATGCAAATCGGGCCATTTTAGGAGCTGGC CTGCTGGATGGATTGCGGAGAGGGCGGAAAACTGTGGAACGGGAGGCCGC AACAAACCAAGGAAGAGAACGCGCAAGCAAGAGTGCGTTAGAGAAAAGAG GCGTCAAGTGGAGAGAGGAATCCGCCGTAACGGCGGCTGGCCAGGCGCAA GCAGCACCGCACACAGGGACGCCTGCGGGAGCATTTTTGTCTTCCCGCAT TGGCTCTGGACCTTGAAACGGGGGCGCCGAGAGATGAAGACGTTCAGTGC GAGTACTCCGCAGTAGCGTTCGCGCCGCGCGCCCTTCGCCGAGCGGGCCC TGCGATGAGTCTCAAGAAGTCGTGGGATGGATGTGCATTTCATTTGGGGT GCCAAATCGCCCCCGGATCGGCCGCTCGGTCATGCGAACAGTAATGCACG CCAATTTTGGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig835:1298..3310+

>mRNA_P-wetherbeei_contig835.3.3 ID=mRNA_P-wetherbeei_contig835.3.3|Name=mRNA_P-wetherbeei_contig835.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig835:1298..3310+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAAGGAAGCGGGCACCGATGTAGACATCGCAGATCGGCTCCTGTC
GACCCTGCCGTACGCCCTGCCATTTTTAGACGGAGTGGACTACGGAAGGT
ACATCTATGCCCTCGCACCGGGGCTGGGCGAGGCCGTCTACTCCGTGTTT
GGATCGACCATTGCTCTCTGGAAAGGGACGCCGCTTGTCGCATTCGGAGC
GTTCATTGGCTTGACCTTTCTGGCGCGCAACCAGAGCCTGCCACGCTTTG
TGCGCTTCAACGTACAACAGGCCATCCTGCTCGACATCGGGCTGATCATT
TGCAATCTTTTTGAGGTACGTTTTACTGGTCGACAGGTGGGGAAAAACGT
GTTCTTTTCGCTCTTTTCTTCCGGATCACCGACGCTCCGATTGCGGGGGC
CATCCGGGCGGTTTCGCCGGGAGGCACGGAGCCGTTCACCAACTTCATCT
TCCTGTGCCTCGCCACTTCCATCGCATACAGCATCTTCGAGAACGCCCAG
GGCAAGGTGA
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