mRNA_P-wetherbeei_contig8044.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A7S2V2V8_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2V8_9STRA) HSP 1 Score: 292 bits (747), Expect = 1.210e-92 Identity = 134/172 (77.91%), Postives = 151/172 (87.79%), Query Frame = 2
Query: 155 GRMANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQLLHDDIVCDIALPRLPKRAML 670
G MANRTDPLA +VHGTNPQNL+EKI R KIYG++YWKEHCFGL+AETL+DKA L HVGG+YGGN KP++FLCL+LKMLQLQP+K+IV+E IKNEDYKY+R LGAFYLRLVGRP DIYQYLEPLYNDYRKLRVRK MGWEL HMD+ +D LL +D CDIALP LPKR L
Sbjct: 5 GIMANRTDPLARTVHGTNPQNLVEKILRMKIYGSIYWKEHCFGLSAETLIDKAMDLGHVGGTYGGNRKPSKFLCLILKMLQLQPEKEIVIELIKNEDYKYIRALGAFYLRLVGRPADIYQYLEPLYNDYRKLRVRKYMGWELTHMDEYIDMLLREDYSCDIALPHLPKRQAL 176
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A836CM94_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM94_9STRA) HSP 1 Score: 286 bits (731), Expect = 6.350e-89 Identity = 133/188 (70.74%), Postives = 160/188 (85.11%), Query Frame = 2
Query: 161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDW 724
MAN TDP A SVHGTNPQ L+EKITR KIY + YWKEHCFGLTAE +V+KA L +VGGSYGGN +P++FLCLVLKMLQLQP+KDIV+EFIKNE++KYVR+LGAFY+RLVGRP+DIYQYLEPLYNDYRK+RVR+ MGW + H+D+++D+LL D DIALP LPKR LE+ L+PR+SVLE+ W
Sbjct: 1 MANTTDPFAISVHGTNPQYLVEKITRTKIYNSQYWKEHCFGLTAEGIVEKAVDLKYVGGSYGGNARPSKFLCLVLKMLQLQPEKDIVIEFIKNEEFKYVRVLGAFYMRLVGRPIDIYQYLEPLYNDYRKVRVRQTMGWAMKHVDEIIDELLRGDHSFDIALPHLPKRGALEET-GALKPRISVLEDAW 187
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: W7TQL1_9STRA (Pre-mRNA-splicing factor 38 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL1_9STRA) HSP 1 Score: 281 bits (720), Expect = 7.390e-85 Identity = 134/187 (71.66%), Postives = 153/187 (81.82%), Query Frame = 2
Query: 161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEED 721
MANRTDP +VHGTNPQ LIEKI R KIY +LYWKEHCFGLTAETLVDKA L GG YGG KPT+F+CLVLKMLQLQP+K+IVVEFIKNEDYKY+R+LGAFYLRLVG+PLDIYQYLEPLYNDYRKLR R GW L HMD+ +++LL D CD+ALP LPKR +LED L PR+S L+++
Sbjct: 1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKL-LAPRISALDDE 186
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: I0YZI6_COCSC (Pre-mRNA-splicing factor 38 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZI6_COCSC) HSP 1 Score: 272 bits (696), Expect = 3.890e-83 Identity = 129/198 (65.15%), Postives = 164/198 (82.83%), Query Frame = 2
Query: 161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDWGGEAGAAEA 751
MANRTDP A SVHGTNPQNL+EKI R KIY ++YWKEHCF LTAE+LVDKA L +VGG++GG PT+F+CL+LK+LQLQP+K+I+VEFIKNEDYKYVR+LGAFYLRLVGRPL++YQYLEPLYNDYRK+R+R A G + L HMD+++DQ+L+ + + D+A+PR+P R +E L PR+SVLE+D+ + AEA
Sbjct: 1 MANRTDPDARSVHGTNPQNLVEKILRMKIYSSMYWKEHCFALTAESLVDKAVDLKYVGGTFGGQRAPTQFMCLMLKLLQLQPEKEIIVEFIKNEDYKYVRILGAFYLRLVGRPLEVYQYLEPLYNDYRKVRLRNADGNFALTHMDEIIDQMLYSEYLFDVAMPRIPNRVTMERLSL-LEPRISVLEDDFDEDMLEAEA 197
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A7S2W3S8_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3S8_9STRA) HSP 1 Score: 276 bits (706), Expect = 1.250e-82 Identity = 130/185 (70.27%), Postives = 158/185 (85.41%), Query Frame = 2
Query: 167 NRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEED 721
N TDPLAASVHGTNPQNL+EKITR KIY +L+WKE CFGLTAETLVD+A L ++GG+YGGN+KP++FLCLVLKMLQLQP+K+I++EFIKNEDYKYVR+LGAFYLRLVG+P+DIY+YLE LY DYRK+RVR GWE+V +D+ +D+LL D CDIALPRLPKR LED + PR++ E+D
Sbjct: 6 NTTDPLAASVHGTNPQNLVEKITRLKIYASLFWKEFCFGLTAETLVDRAMGLQYIGGTYGGNVKPSKFLCLVLKMLQLQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGKPVDIYKYLELLYADYRKIRVRTKQGWEIVRVDEFIDELLTSDYSCDIALPRLPKRWHLEDAGM-IPPRMNHAEDD 189
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A7S1IJP8_9EUGL (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IJP8_9EUGL) HSP 1 Score: 265 bits (678), Expect = 1.190e-81 Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 2
Query: 152 DGRMANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEED 721
D MANRTDPLA SVHGTNPQ++IEKI R++IYG YWKEHCFGLTAE++VDKA L + G+YGG KP++FLCLVLK LQ+QPDK+I++EFIKNEDYKYVR+LGAFYLRLVGR LDIYQYLEPL NDYRK+R R G +++ H+D+++ LL+ D +CD+ALP LPKR LED L R+SVLE+D
Sbjct: 9 DPAMANRTDPLARSVHGTNPQHMIEKIVRSRIYGCTYWKEHCFGLTAESIVDKAMDLDYYAGTYGGFRKPSKFLCLVLKCLQIQPDKEIIIEFIKNEDYKYVRVLGAFYLRLVGRALDIYQYLEPLLNDYRKIRERGLDGKYKITHVDEIIWDLLNKDTLCDVALPHLPKRTTLEDQQL-LSERISVLEDD 198
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A061QUJ5_9CHLO (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUJ5_9CHLO) HSP 1 Score: 270 bits (690), Expect = 2.160e-81 Identity = 131/189 (69.31%), Postives = 158/189 (83.60%), Query Frame = 2
Query: 161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDW 724
MANRTDP AA+VHGTNPQNL+EKI R KIY LYWKEHCFGL+AE +VDKA L VGG++GG K T F+CL+LKMLQ+QPDKDI++EFIKNEDYKYVR+LGA+YLRLVGRPL++YQYLEPLYNDYRK+RV A G +EL H+D+LVDQ+L D + DIALPRLP+R + E +L PR SVL+E++
Sbjct: 1 MANRTDPSAAAVHGTNPQNLVEKILRMKIYSQLYWKEHCFGLSAEGVVDKAVELRCVGGTFGGTRKATNFMCLILKMLQIQPDKDIIIEFIKNEDYKYVRILGAYYLRLVGRPLEVYQYLEPLYNDYRKVRVMNASGAYELSHVDELVDQMLTTDYMFDIALPRLPERNVYESQ-GQLDPRQSVLDEEF 188
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A1D1Z5H8_9ARAE (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z5H8_9ARAE) HSP 1 Score: 266 bits (681), Expect = 6.730e-81 Identity = 130/189 (68.78%), Postives = 154/189 (81.48%), Query Frame = 2
Query: 161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDW 724
MANRTDP A S+HGTNPQNL+EKI R+KIY YWKE CFGLTAETLVDKA L H+GG++GGN KPT F+CLVLKMLQ+QP+KDIVVEFIKNEDYKYVR+LGAFY+RL G D+YQYLEPLYNDYRKLR++ A G + L H+D+L+D+LL +D CDIALPR+ +R LE L PR S LE+D+
Sbjct: 1 MANRTDPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVLKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYMRLTGTVTDVYQYLEPLYNDYRKLRLKSADGRFSLTHVDELIDELLTNDYSCDIALPRVQRRWTLEATGL-LEPRRSALEDDF 188
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: UPI0018ADD529 (pre-mRNA-splicing factor 38-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADD529) HSP 1 Score: 268 bits (684), Expect = 1.350e-80 Identity = 130/189 (68.78%), Postives = 154/189 (81.48%), Query Frame = 2
Query: 161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDW 724
MANRTDPLA S+HGTNPQNL+EKI R+KIY YWKE CFGLTAETLVDKA L H+GG++GGN +PT F+CLV+KMLQ+QPDKDIVVEFIKNEDYKYVR+LGAFY+RL G D+YQYLEPLYNDYRKLR + + G + L H+D+++D+LL D CDIALPR+ KR LE L PR SVL+ED+
Sbjct: 1 MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRRPTPFICLVMKMLQIQPDKDIVVEFIKNEDYKYVRILGAFYMRLTGTVTDVYQYLEPLYNDYRKLRRKTSDGSFSLTHVDEVIDELLTKDYSCDIALPRVQKRWTLETTGV-LEPRKSVLDEDF 188
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A1Y1HWA0_KLENI (Pre-mRNA-splicing factor 38 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWA0_KLENI) HSP 1 Score: 269 bits (687), Expect = 1.820e-80 Identity = 133/199 (66.83%), Postives = 155/199 (77.89%), Query Frame = 2
Query: 161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDWGGEAGAAEAE 754
MANRTDP A ++HGTNPQNL+EKI R+KIY YW+EHCFGLTAETLVDKA L H GG++GGN K T FLCL LKMLQ+QP+K+IVVEFIKNEDYKYVR+LGAFYLRLVG+P D+YQYLEPLYNDYRKLR + A G + L H+D+ +D+LL D CDI LPRLPKR LE L PR+S LE+ + E E E
Sbjct: 1 MANRTDPRARNIHGTNPQNLVEKIVRSKIYSNTYWREHCFGLTAETLVDKAMELDHFGGTFGGNRKATPFLCLTLKMLQIQPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKPTDVYQYLEPLYNDYRKLRQKTAEGKYILSHVDEFIDELLTRDSHCDITLPRLPKRYTLESA-GTLDPRISALEDHFEEEDDEEEGE 198 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8044.1.2 >prot_P-wetherbeei_contig8044.1.2 ID=prot_P-wetherbeei_contig8044.1.2|Name=mRNA_P-wetherbeei_contig8044.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=568bp MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKback to top mRNA from alignment at P-wetherbeei_contig8044:10..2542+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8044.1.2 ID=mRNA_P-wetherbeei_contig8044.1.2|Name=mRNA_P-wetherbeei_contig8044.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2533bp|location=Sequence derived from alignment at P-wetherbeei_contig8044:10..2542+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8044:10..2542+ >mRNA_P-wetherbeei_contig8044.1.2 ID=mRNA_P-wetherbeei_contig8044.1.2|Name=mRNA_P-wetherbeei_contig8044.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1704bp|location=Sequence derived from alignment at P-wetherbeei_contig8044:10..2542+ (Phaeothamnion wetherbeei SAG_119_79)back to top |