mRNA_P-wetherbeei_contig8044.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8044.1.2
Unique NamemRNA_P-wetherbeei_contig8044.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A7S2V2V8_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2V8_9STRA)

HSP 1 Score: 292 bits (747), Expect = 1.210e-92
Identity = 134/172 (77.91%), Postives = 151/172 (87.79%), Query Frame = 2
Query:  155 GRMANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQLLHDDIVCDIALPRLPKRAML 670
            G MANRTDPLA +VHGTNPQNL+EKI R KIYG++YWKEHCFGL+AETL+DKA  L HVGG+YGGN KP++FLCL+LKMLQLQP+K+IV+E IKNEDYKY+R LGAFYLRLVGRP DIYQYLEPLYNDYRKLRVRK MGWEL HMD+ +D LL +D  CDIALP LPKR  L
Sbjct:    5 GIMANRTDPLARTVHGTNPQNLVEKILRMKIYGSIYWKEHCFGLSAETLIDKAMDLGHVGGTYGGNRKPSKFLCLILKMLQLQPEKEIVIELIKNEDYKYIRALGAFYLRLVGRPADIYQYLEPLYNDYRKLRVRKYMGWELTHMDEYIDMLLREDYSCDIALPHLPKRQAL 176          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A836CM94_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM94_9STRA)

HSP 1 Score: 286 bits (731), Expect = 6.350e-89
Identity = 133/188 (70.74%), Postives = 160/188 (85.11%), Query Frame = 2
Query:  161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDW 724
            MAN TDP A SVHGTNPQ L+EKITR KIY + YWKEHCFGLTAE +V+KA  L +VGGSYGGN +P++FLCLVLKMLQLQP+KDIV+EFIKNE++KYVR+LGAFY+RLVGRP+DIYQYLEPLYNDYRK+RVR+ MGW + H+D+++D+LL  D   DIALP LPKR  LE+    L+PR+SVLE+ W
Sbjct:    1 MANTTDPFAISVHGTNPQYLVEKITRTKIYNSQYWKEHCFGLTAEGIVEKAVDLKYVGGSYGGNARPSKFLCLVLKMLQLQPEKDIVIEFIKNEEFKYVRVLGAFYMRLVGRPIDIYQYLEPLYNDYRKVRVRQTMGWAMKHVDEIIDELLRGDHSFDIALPHLPKRGALEET-GALKPRISVLEDAW 187          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: W7TQL1_9STRA (Pre-mRNA-splicing factor 38 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL1_9STRA)

HSP 1 Score: 281 bits (720), Expect = 7.390e-85
Identity = 134/187 (71.66%), Postives = 153/187 (81.82%), Query Frame = 2
Query:  161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEED 721
            MANRTDP   +VHGTNPQ LIEKI R KIY +LYWKEHCFGLTAETLVDKA  L   GG YGG  KPT+F+CLVLKMLQLQP+K+IVVEFIKNEDYKY+R+LGAFYLRLVG+PLDIYQYLEPLYNDYRKLR R   GW L HMD+ +++LL  D  CD+ALP LPKR +LED    L PR+S L+++
Sbjct:    1 MANRTDPTVTTVHGTNPQFLIEKILRQKIYNSLYWKEHCFGLTAETLVDKAVGLKAYGGQYGGMQKPTKFMCLVLKMLQLQPEKEIVVEFIKNEDYKYLRVLGAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKL-LAPRISALDDE 186          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: I0YZI6_COCSC (Pre-mRNA-splicing factor 38 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZI6_COCSC)

HSP 1 Score: 272 bits (696), Expect = 3.890e-83
Identity = 129/198 (65.15%), Postives = 164/198 (82.83%), Query Frame = 2
Query:  161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDWGGEAGAAEA 751
            MANRTDP A SVHGTNPQNL+EKI R KIY ++YWKEHCF LTAE+LVDKA  L +VGG++GG   PT+F+CL+LK+LQLQP+K+I+VEFIKNEDYKYVR+LGAFYLRLVGRPL++YQYLEPLYNDYRK+R+R A G + L HMD+++DQ+L+ + + D+A+PR+P R  +E     L PR+SVLE+D+  +   AEA
Sbjct:    1 MANRTDPDARSVHGTNPQNLVEKILRMKIYSSMYWKEHCFALTAESLVDKAVDLKYVGGTFGGQRAPTQFMCLMLKLLQLQPEKEIIVEFIKNEDYKYVRILGAFYLRLVGRPLEVYQYLEPLYNDYRKVRLRNADGNFALTHMDEIIDQMLYSEYLFDVAMPRIPNRVTMERLSL-LEPRISVLEDDFDEDMLEAEA 197          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A7S2W3S8_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3S8_9STRA)

HSP 1 Score: 276 bits (706), Expect = 1.250e-82
Identity = 130/185 (70.27%), Postives = 158/185 (85.41%), Query Frame = 2
Query:  167 NRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEED 721
            N TDPLAASVHGTNPQNL+EKITR KIY +L+WKE CFGLTAETLVD+A  L ++GG+YGGN+KP++FLCLVLKMLQLQP+K+I++EFIKNEDYKYVR+LGAFYLRLVG+P+DIY+YLE LY DYRK+RVR   GWE+V +D+ +D+LL  D  CDIALPRLPKR  LED    + PR++  E+D
Sbjct:    6 NTTDPLAASVHGTNPQNLVEKITRLKIYASLFWKEFCFGLTAETLVDRAMGLQYIGGTYGGNVKPSKFLCLVLKMLQLQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGKPVDIYKYLELLYADYRKIRVRTKQGWEIVRVDEFIDELLTSDYSCDIALPRLPKRWHLEDAGM-IPPRMNHAEDD 189          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A7S1IJP8_9EUGL (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IJP8_9EUGL)

HSP 1 Score: 265 bits (678), Expect = 1.190e-81
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 2
Query:  152 DGRMANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEED 721
            D  MANRTDPLA SVHGTNPQ++IEKI R++IYG  YWKEHCFGLTAE++VDKA  L +  G+YGG  KP++FLCLVLK LQ+QPDK+I++EFIKNEDYKYVR+LGAFYLRLVGR LDIYQYLEPL NDYRK+R R   G +++ H+D+++  LL+ D +CD+ALP LPKR  LED    L  R+SVLE+D
Sbjct:    9 DPAMANRTDPLARSVHGTNPQHMIEKIVRSRIYGCTYWKEHCFGLTAESIVDKAMDLDYYAGTYGGFRKPSKFLCLVLKCLQIQPDKEIIIEFIKNEDYKYVRVLGAFYLRLVGRALDIYQYLEPLLNDYRKIRERGLDGKYKITHVDEIIWDLLNKDTLCDVALPHLPKRTTLEDQQL-LSERISVLEDD 198          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A061QUJ5_9CHLO (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUJ5_9CHLO)

HSP 1 Score: 270 bits (690), Expect = 2.160e-81
Identity = 131/189 (69.31%), Postives = 158/189 (83.60%), Query Frame = 2
Query:  161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDW 724
            MANRTDP AA+VHGTNPQNL+EKI R KIY  LYWKEHCFGL+AE +VDKA  L  VGG++GG  K T F+CL+LKMLQ+QPDKDI++EFIKNEDYKYVR+LGA+YLRLVGRPL++YQYLEPLYNDYRK+RV  A G +EL H+D+LVDQ+L  D + DIALPRLP+R + E    +L PR SVL+E++
Sbjct:    1 MANRTDPSAAAVHGTNPQNLVEKILRMKIYSQLYWKEHCFGLSAEGVVDKAVELRCVGGTFGGTRKATNFMCLILKMLQIQPDKDIIIEFIKNEDYKYVRILGAYYLRLVGRPLEVYQYLEPLYNDYRKVRVMNASGAYELSHVDELVDQMLTTDYMFDIALPRLPERNVYESQ-GQLDPRQSVLDEEF 188          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A1D1Z5H8_9ARAE (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z5H8_9ARAE)

HSP 1 Score: 266 bits (681), Expect = 6.730e-81
Identity = 130/189 (68.78%), Postives = 154/189 (81.48%), Query Frame = 2
Query:  161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDW 724
            MANRTDP A S+HGTNPQNL+EKI R+KIY   YWKE CFGLTAETLVDKA  L H+GG++GGN KPT F+CLVLKMLQ+QP+KDIVVEFIKNEDYKYVR+LGAFY+RL G   D+YQYLEPLYNDYRKLR++ A G + L H+D+L+D+LL +D  CDIALPR+ +R  LE     L PR S LE+D+
Sbjct:    1 MANRTDPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVLKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYMRLTGTVTDVYQYLEPLYNDYRKLRLKSADGRFSLTHVDELIDELLTNDYSCDIALPRVQRRWTLEATGL-LEPRRSALEDDF 188          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: UPI0018ADD529 (pre-mRNA-splicing factor 38-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADD529)

HSP 1 Score: 268 bits (684), Expect = 1.350e-80
Identity = 130/189 (68.78%), Postives = 154/189 (81.48%), Query Frame = 2
Query:  161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDW 724
            MANRTDPLA S+HGTNPQNL+EKI R+KIY   YWKE CFGLTAETLVDKA  L H+GG++GGN +PT F+CLV+KMLQ+QPDKDIVVEFIKNEDYKYVR+LGAFY+RL G   D+YQYLEPLYNDYRKLR + + G + L H+D+++D+LL  D  CDIALPR+ KR  LE     L PR SVL+ED+
Sbjct:    1 MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRRPTPFICLVMKMLQIQPDKDIVVEFIKNEDYKYVRILGAFYMRLTGTVTDVYQYLEPLYNDYRKLRRKTSDGSFSLTHVDEVIDELLTKDYSCDIALPRVQKRWTLETTGV-LEPRKSVLDEDF 188          
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Match: A0A1Y1HWA0_KLENI (Pre-mRNA-splicing factor 38 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWA0_KLENI)

HSP 1 Score: 269 bits (687), Expect = 1.820e-80
Identity = 133/199 (66.83%), Postives = 155/199 (77.89%), Query Frame = 2
Query:  161 MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDKATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVRLLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMG-WELVHMDDLVDQLLHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDWGGEAGAAEAE 754
            MANRTDP A ++HGTNPQNL+EKI R+KIY   YW+EHCFGLTAETLVDKA  L H GG++GGN K T FLCL LKMLQ+QP+K+IVVEFIKNEDYKYVR+LGAFYLRLVG+P D+YQYLEPLYNDYRKLR + A G + L H+D+ +D+LL  D  CDI LPRLPKR  LE     L PR+S LE+ +  E    E E
Sbjct:    1 MANRTDPRARNIHGTNPQNLVEKIVRSKIYSNTYWREHCFGLTAETLVDKAMELDHFGGTFGGNRKATPFLCLTLKMLQIQPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKPTDVYQYLEPLYNDYRKLRQKTAEGKYILSHVDEFIDELLTRDSHCDITLPRLPKRYTLESA-GTLDPRISALEDHFEEEDDEEEGE 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8044.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V2V8_9STRA1.210e-9277.91Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fib... [more]
A0A836CM94_9STRA6.350e-8970.74Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tri... [more]
W7TQL1_9STRA7.390e-8571.66Pre-mRNA-splicing factor 38 n=2 Tax=Monodopsidacea... [more]
I0YZI6_COCSC3.890e-8365.15Pre-mRNA-splicing factor 38 n=1 Tax=Coccomyxa sube... [more]
A0A7S2W3S8_9STRA1.250e-8270.27Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulin... [more]
A0A7S1IJP8_9EUGL1.190e-8167.02Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Eut... [more]
A0A061QUJ5_9CHLO2.160e-8169.31Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tet... [more]
A0A1D1Z5H8_9ARAE6.730e-8168.78Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Ant... [more]
UPI0018ADD5291.350e-8068.78pre-mRNA-splicing factor 38-like n=1 Tax=Dioscorea... [more]
A0A1Y1HWA0_KLENI1.820e-8066.83Pre-mRNA-splicing factor 38 n=1 Tax=Klebsormidium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8044contigP-wetherbeei_contig8044:10..2542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog248742.XP_005648349.1
PFAMsPRP38,PRP38_assoc
Model size1865
Max annot lvl3041|Chlorophyta
KEGG koko:K12849
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.56e-84
EggNOG OGsKOG2889@1|root,KOG2889@2759|Eukaryota,37MJN@33090|Viridiplantae,34HPJ@3041|Chlorophyta
Ec32 ortholog descriptionPre-mRNA-splicing factor 38
Ec32 orthologEc-16_000410.1
DescriptionPRP38 family
Cds size1704
COG categoryS
BRITEko00000,ko00001,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.2022066-UTR-P-wetherbeei_contig8044:9..1691683187017.2022066-UTR-P-wetherbeei_contig8044:9..169Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8044 10..169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.214645-CDS-P-wetherbeei_contig8044:169..2531683187017.214645-CDS-P-wetherbeei_contig8044:169..253Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8044 170..253 +
1683187017.2242844-CDS-P-wetherbeei_contig8044:399..5581683187017.2242844-CDS-P-wetherbeei_contig8044:399..558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8044 400..558 +
1683187017.2338877-CDS-P-wetherbeei_contig8044:727..8711683187017.2338877-CDS-P-wetherbeei_contig8044:727..871Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8044 728..871 +
1683187017.2439072-CDS-P-wetherbeei_contig8044:1225..25421683187017.2439072-CDS-P-wetherbeei_contig8044:1225..2542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8044 1226..2542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8044.1.2prot_P-wetherbeei_contig8044.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8044 170..2542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8044.1.2

>prot_P-wetherbeei_contig8044.1.2 ID=prot_P-wetherbeei_contig8044.1.2|Name=mRNA_P-wetherbeei_contig8044.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=568bp
MANRTDPLAASVHGTNPQNLIEKITRAKIYGTLYWKEHCFGLTAETLVDK
ATLLTHVGGSYGGNMKPTRFLCLVLKMLQLQPDKDIVVEFIKNEDYKYVR
LLGAFYLRLVGRPLDIYQYLEPLYNDYRKLRVRKAMGWELVHMDDLVDQL
LHDDIVCDIALPRLPKRAMLEDPPYRLRPRVSVLEEDWGGEAGAAEAEAA
AAAAEAAEAAVMAAAEAEATGIAVDSERGGRWRDEDDGRRREEDDGDGGR
NGWNRGYDGEDNGRGGDRRRGRRDDSAEKEQGEVREHNRERGGGAQNGHR
SGKGGGDGGRKRPRSRSRSRSRSRSRSRSGSGGRDSLRRHHRGSPPRHGY
RDRDRDDDVRGRRRGDSRDGVRRRGGEYGGRHDSRERGRGGGSGGRRRAD
DSRDRGHHRGGGCSPSEDRSRRRSRRDSRDRRGSSPGSGRSRSRSPGRGG
GAGRNRRGYRDRSRDRSSDRSRDRSRDRSRSKDSGRGRNGKDRRRREDRS
RSASPVLSIKGRKDGGSERAAAAAPAAAENKSDAKRQKRSPKGLFKETAQ
AEPAAANGKGGGGGGGGG
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mRNA from alignment at P-wetherbeei_contig8044:10..2542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8044.1.2 ID=mRNA_P-wetherbeei_contig8044.1.2|Name=mRNA_P-wetherbeei_contig8044.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2533bp|location=Sequence derived from alignment at P-wetherbeei_contig8044:10..2542+ (Phaeothamnion wetherbeei SAG_119_79)
CAAGAGGGTCGGTGGCTGGCTTCAGAGGGTACCTCTACTTGGAAGCAGCT GGGAAAAGCACGCAAATCGGCTCTCCCTTGATCGCCGCCCATCCCCGTCG CTCTCTCCCAACTTGCTTGTTTGCGTGTTTGTTGGGTAAAGTTAGCGGCG TGACGGAAGGATGGCGAACAGGACAGATCCCCTTGCCGCCTCGGTGCACG GCACGAACCCGCAAAATCTCATTGAGAAGATCACCAGAGCCAAGGTAGGT CACCTCGTGCTGTTTTCTCGTGGTCAATGTCCTCCTCGAGTGGCTTGCTC CTCCTTTGCACCTGTTTCGAATCTTTATCATACTAAAAGGATGTTTGCAA ACCTTCCCTTACTGCTCTCACCTTACCATGTATTCTGCAGATCTATGGCA CCCTGTACTGGAAGGAGCATTGCTTTGGCTTGACCGCCGAGACGCTGGTC GACAAGGCGACATTACTGACCCACGTCGGCGGAAGCTACGGCGGCAACAT GAAGCCCACGCGCTTTCTGTGCCTTGTGCTCAAAATGCTTCAGCTGCAGG TGAGTGGCAAGTCACCGAGCAAGGTTATTCACAGCCATTCCTCGCGTTTT CCCAGGGGTGGCCTAATCAATTCGACTTTCTCCTACCTACAATGTAGCTT CAGCTAGGCGCTAGACCCTTTGAGCCTAACATTTCTTGCCTTTGTTGCCG AGCTTATTCTCTTTGCAGCCGGACAAGGACATTGTGGTGGAGTTCATTAA GAACGAGGACTACAAGTACGTACGGCTGTTGGGGGCCTTCTACCTGCGGC TGGTGGGGCGGCCGCTCGACATCTACCAGTACCTTGAGCCCCTCTATAAT GACTACCGAAAGGCAAGTGGAAGGTTGCGTTTGCTCGCTGGAGAATGATT TTATTCGTTGACTGATTGATTGGTTTGCCGCCGCAGCAGCTGCCGGGAGA ATGCGCACTCTCTTCTGTTTTCCTGGCTTCTGCGGTACCGCTCTCTTCTG TCACAGAATCTGACACGCAACTGACATCAATAGTGTTTTCTCATGACTTT TCCCACATACCTACGCCGCTGGTTCGTTCTTCAACGATGTGAATACCCCT CCCGCAACTTTCTTCCTGTCCTTCCCTCTAATCTCACCGTTCTCTTTCTT TTCCATCTGTCAAAATCCTCCCGCAAATCGAAATCGAAATAAAACCCGTG CCCGCCGACTCGCTAGCTGCGGGTACGCAAGGCGATGGGGTGGGAGCTTG TGCACATGGACGACCTGGTCGACCAGCTGCTCCACGACGACATCGTCTGC GACATCGCCCTGCCGCGCCTGCCCAAGCGCGCCATGCTCGAGGACCCGCC CTACCGCCTGCGGCCGCGCGTCAGCGTCCTGGAGGAGGACTGGGGCGGCG AGGCGGGCGCGGCGGAGGCCGAGGCAGCGGCGGCCGCGGCCGAGGCGGCC GAGGCAGCGGTGATGGCAGCGGCGGAGGCGGAGGCGACGGGGATAGCGGT GGATTCAGAGCGGGGTGGGCGCTGGCGGGACGAGGACGATGGCCGTCGCC GGGAAGAAGATGACGGCGACGGCGGTCGCAACGGCTGGAATCGCGGCTAC GACGGAGAGGACAACGGCCGTGGCGGCGACCGCCGGCGCGGACGCCGCGA CGACAGCGCGGAGAAGGAGCAGGGAGAGGTGCGGGAGCATAATCGGGAGC GCGGCGGTGGCGCGCAAAACGGGCACCGCAGCGGTAAAGGCGGAGGCGAT GGCGGACGCAAACGACCACGGAGCCGGAGCCGCAGTCGCAGCCGGAGCAG GAGCCGCAGCCGCAGCGGCTCGGGCGGTCGTGACAGCCTGCGCCGACACC ACCGCGGGTCCCCGCCGCGGCATGGTTATCGGGACCGGGACAGGGATGAC GACGTCAGGGGTCGCCGGCGGGGCGACAGCCGAGATGGGGTCAGGCGGCG CGGCGGCGAGTACGGAGGGCGTCATGACAGCCGGGAGCGTGGCAGAGGGG GCGGCAGCGGAGGGAGACGCAGAGCAGACGACAGCCGTGATCGCGGTCAC CACCGTGGCGGGGGTTGCAGTCCGAGCGAGGACCGGAGCAGGCGGCGGAG CCGGCGCGACAGCAGGGACAGGCGCGGATCTTCTCCGGGCAGCGGCCGCA GCCGGAGCCGCAGCCCCGGCCGAGGCGGCGGCGCTGGCAGGAACCGGCGT GGATACCGCGACCGCAGCCGCGACCGCAGCAGCGACCGCAGCCGCGACCG CAGCCGCGATCGCAGCCGCAGCAAGGATAGCGGCAGGGGCAGGAACGGCA AGGACCGCCGGCGTCGTGAGGATCGGTCGAGGTCGGCGTCTCCGGTCCTT AGCATCAAGGGCCGCAAGGATGGTGGTTCAGAGCGTGCGGCGGCGGCAGC GCCGGCAGCGGCGGAGAACAAAAGTGACGCCAAGCGGCAAAAGCGGTCGC CAAAGGGGCTGTTTAAGGAGACGGCGCAGGCCGAACCGGCCGCAGCCAAT GGGAAAGGAGGCGGCGGTGGAGGCGGCGGTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8044:10..2542+

>mRNA_P-wetherbeei_contig8044.1.2 ID=mRNA_P-wetherbeei_contig8044.1.2|Name=mRNA_P-wetherbeei_contig8044.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1704bp|location=Sequence derived from alignment at P-wetherbeei_contig8044:10..2542+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAACAGGACAGATCCCCTTGCCGCCTCGGTGCACGGCACGAACCC
GCAAAATCTCATTGAGAAGATCACCAGAGCCAAGATCTATGGCACCCTGT
ACTGGAAGGAGCATTGCTTTGGCTTGACCGCCGAGACGCTGGTCGACAAG
GCGACATTACTGACCCACGTCGGCGGAAGCTACGGCGGCAACATGAAGCC
CACGCGCTTTCTGTGCCTTGTGCTCAAAATGCTTCAGCTGCAGCCGGACA
AGGACATTGTGGTGGAGTTCATTAAGAACGAGGACTACAAGTACGTACGG
CTGTTGGGGGCCTTCTACCTGCGGCTGGTGGGGCGGCCGCTCGACATCTA
CCAGTACCTTGAGCCCCTCTATAATGACTACCGAAAGCTGCGGGTACGCA
AGGCGATGGGGTGGGAGCTTGTGCACATGGACGACCTGGTCGACCAGCTG
CTCCACGACGACATCGTCTGCGACATCGCCCTGCCGCGCCTGCCCAAGCG
CGCCATGCTCGAGGACCCGCCCTACCGCCTGCGGCCGCGCGTCAGCGTCC
TGGAGGAGGACTGGGGCGGCGAGGCGGGCGCGGCGGAGGCCGAGGCAGCG
GCGGCCGCGGCCGAGGCGGCCGAGGCAGCGGTGATGGCAGCGGCGGAGGC
GGAGGCGACGGGGATAGCGGTGGATTCAGAGCGGGGTGGGCGCTGGCGGG
ACGAGGACGATGGCCGTCGCCGGGAAGAAGATGACGGCGACGGCGGTCGC
AACGGCTGGAATCGCGGCTACGACGGAGAGGACAACGGCCGTGGCGGCGA
CCGCCGGCGCGGACGCCGCGACGACAGCGCGGAGAAGGAGCAGGGAGAGG
TGCGGGAGCATAATCGGGAGCGCGGCGGTGGCGCGCAAAACGGGCACCGC
AGCGGTAAAGGCGGAGGCGATGGCGGACGCAAACGACCACGGAGCCGGAG
CCGCAGTCGCAGCCGGAGCAGGAGCCGCAGCCGCAGCGGCTCGGGCGGTC
GTGACAGCCTGCGCCGACACCACCGCGGGTCCCCGCCGCGGCATGGTTAT
CGGGACCGGGACAGGGATGACGACGTCAGGGGTCGCCGGCGGGGCGACAG
CCGAGATGGGGTCAGGCGGCGCGGCGGCGAGTACGGAGGGCGTCATGACA
GCCGGGAGCGTGGCAGAGGGGGCGGCAGCGGAGGGAGACGCAGAGCAGAC
GACAGCCGTGATCGCGGTCACCACCGTGGCGGGGGTTGCAGTCCGAGCGA
GGACCGGAGCAGGCGGCGGAGCCGGCGCGACAGCAGGGACAGGCGCGGAT
CTTCTCCGGGCAGCGGCCGCAGCCGGAGCCGCAGCCCCGGCCGAGGCGGC
GGCGCTGGCAGGAACCGGCGTGGATACCGCGACCGCAGCCGCGACCGCAG
CAGCGACCGCAGCCGCGACCGCAGCCGCGATCGCAGCCGCAGCAAGGATA
GCGGCAGGGGCAGGAACGGCAAGGACCGCCGGCGTCGTGAGGATCGGTCG
AGGTCGGCGTCTCCGGTCCTTAGCATCAAGGGCCGCAAGGATGGTGGTTC
AGAGCGTGCGGCGGCGGCAGCGCCGGCAGCGGCGGAGAACAAAAGTGACG
CCAAGCGGCAAAAGCGGTCGCCAAAGGGGCTGTTTAAGGAGACGGCGCAG
GCCGAACCGGCCGCAGCCAATGGGAAAGGAGGCGGCGGTGGAGGCGGCGG
TGGA
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