mRNA_P-wetherbeei_contig7887.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7887.3.1
Unique NamemRNA_P-wetherbeei_contig7887.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: A0A1F2ZZW9_9PROT (DUF4440 domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F2ZZW9_9PROT)

HSP 1 Score: 280 bits (715), Expect = 3.740e-95
Identity = 133/143 (93.01%), Postives = 136/143 (95.10%), Query Frame = 1
Query:   13 MTAELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQP 441
            MTAELRALNARFIHNFITNDVPSHDAILHKDFICITP GGRVGRADYLKAWATGFD ERIPYFDYRDELIHVFGATALLRSTNKSIR+ DGVE+ GMTMYTD YVHQDGAWKCIQAQITPVAPANYPPDETIVKKYV+GK  P
Sbjct:    1 MTAELRALNARFIHNFITNDVPSHDAILHKDFICITPTGGRVGRADYLKAWATGFDPERIPYFDYRDELIHVFGATALLRSTNKSIRMVDGVETTGMTMYTDTYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVKGKALP 143          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: A0A521KX29_9HYPH (Nuclear transport factor 2 family protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521KX29_9HYPH)

HSP 1 Score: 265 bits (677), Expect = 3.280e-89
Identity = 127/146 (86.99%), Postives = 135/146 (92.47%), Query Frame = 1
Query:    1 RRLAMTAELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQ 438
            RRLAMTAELRALNARFIHNFITNDVPSHDAILH+ FICITPAG RVGRADYLKAWATGFD +RIPYFDYRDE I +FG TALLRSTNKSIR+ DGVE+ GMTMYTD YV QDGAWKCIQAQITPVAPANYPPDETIV+KYVRG+ +
Sbjct:    7 RRLAMTAELRALNARFIHNFITNDVPSHDAILHEGFICITPAGARVGRADYLKAWATGFDPDRIPYFDYRDEKIDLFGDTALLRSTNKSIRMLDGVETTGMTMYTDIYVRQDGAWKCIQAQITPVAPANYPPDETIVRKYVRGRAE 152          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: UPI001C21976E (DUF4440 domain-containing protein n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001C21976E)

HSP 1 Score: 246 bits (629), Expect = 4.860e-82
Identity = 117/143 (81.82%), Postives = 125/143 (87.41%), Query Frame = 1
Query:   13 MTAELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQP 441
            MTAELRALNARFIHNFITNDVP HDAILH+DFICI+PAG R+ RADYL+ WA GFD  RIPYFDYRDE I VFG TALLRSTNKS+RV+DGVE  GMTMYTD YV +DG WKCIQAQITPV PA+YPPDETIVKKYVRG  QP
Sbjct:    1 MTAELRALNARFIHNFITNDVPGHDAILHEDFICISPAGLRISRADYLEEWADGFDPARIPYFDYRDEKIDVFGDTALLRSTNKSVRVRDGVEITGMTMYTDVYVRRDGVWKCIQAQITPVQPAHYPPDETIVKKYVRGMAQP 143          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: UPI001E5672B3 (nuclear transport factor 2 family protein n=1 Tax=Reyranella aquatilis TaxID=2035356 RepID=UPI001E5672B3)

HSP 1 Score: 245 bits (626), Expect = 1.390e-81
Identity = 118/143 (82.52%), Postives = 124/143 (86.71%), Query Frame = 1
Query:   13 MTAELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQP 441
            MTAELRALNARFIHNFITNDV  HDAILH  FICI+PAG RV RADYL  WA GFDAERIPYFDYRDE I VFG TALLRSTNKS+R+KDGVE+ GMTMYTD YV QDG WKC+QAQITPV PA+YPPDETIVKKYVRG  QP
Sbjct:    1 MTAELRALNARFIHNFITNDVAGHDAILHPAFICISPAGLRVSRADYLAEWAHGFDAERIPYFDYRDERIDVFGDTALLRSTNKSVRLKDGVETTGMTMYTDTYVRQDGTWKCVQAQITPVQPAHYPPDETIVKKYVRGMAQP 143          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: A0A537MZQ3_9PROT (Nuclear transport factor 2 family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MZQ3_9PROT)

HSP 1 Score: 241 bits (615), Expect = 6.610e-80
Identity = 113/142 (79.58%), Postives = 126/142 (88.73%), Query Frame = 1
Query:   13 MTAELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQ 438
            MT ELRALNARFIHNFITNDV SHDAILH DFICITP G RVGRA+YL+AWATGFDA RIPY+DYRDE I VFG TAL+RSTNK +  KDGVE++GMTMYTD YV +DGAWKCIQAQITPVAPA+YPPD+TIV+KY++G  Q
Sbjct:    1 MTDELRALNARFIHNFITNDVGSHDAILHPDFICITPTGARVGRANYLEAWATGFDAGRIPYYDYRDEKIDVFGDTALVRSTNKRVGSKDGVETVGMTMYTDIYVRRDGAWKCIQAQITPVAPAHYPPDDTIVRKYIKGHAQ 142          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: A0A1H8NQL6_9PROT (DUF4440 domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8NQL6_9PROT)

HSP 1 Score: 235 bits (600), Expect = 1.280e-77
Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = 1
Query:   13 MTAELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQ 438
            MTAELRALNARFI+NFITNDV  HDAILH+ FICI P G RV RADYLKAWATGFDA RIPY+DYRDE I VFG TAL+RSTNK + +KDGVE++ MTMYTD YV   GAWKC+QAQITPV PANYPPDETIV+KYV+G++Q
Sbjct:    1 MTAELRALNARFINNFITNDVAGHDAILHEGFICIAPTGARVSRADYLKAWATGFDAGRIPYYDYRDEKIDVFGDTALVRSTNKRVGLKDGVETVSMTMYTDIYVRDGGAWKCVQAQITPVQPANYPPDETIVRKYVKGEVQ 142          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: A0A5C5T5C7_9HYPH (Nuclear transport factor 2 family protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5T5C7_9HYPH)

HSP 1 Score: 200 bits (509), Expect = 1.100e-63
Identity = 94/139 (67.63%), Postives = 109/139 (78.42%), Query Frame = 1
Query:   22 ELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQ 438
            +LRALNA+FI+NF+TNDVPSHD + HKDF+CIT  G RVGR+ YL  WATGFD   IPY+DYR E I VFG+TAL+RS NK   VKDGVE+  MT YTD Y+H+ G W CIQAQ TPVAP NYP DETIVKK++RG  Q
Sbjct:    9 QLRALNAQFINNFVTNDVPSHDRLTHKDFVCITSKGERVGRSTYLDRWATGFDPAVIPYWDYRGESISVFGSTALVRSVNKHTVVKDGVETTSMTAYTDTYIHEAGEWTCIQAQSTPVAPENYPGDETIVKKWIRGVPQ 147          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: A0A7Z2PTF8_9BRAD (DUF4440 domain-containing protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A7Z2PTF8_9BRAD)

HSP 1 Score: 191 bits (484), Expect = 9.700e-60
Identity = 94/140 (67.14%), Postives = 107/140 (76.43%), Query Frame = 1
Query:   22 ELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQP 441
            ELRALNARFIHNF+T+DVPSHDAILH  FI I P G R  RA YLK WAT FD + I Y+D RDELI V G  AL+RSTNK IR +DG E  GMT YTD Y+ ++GAWKCIQAQ+T VAP +YP D+TIV  Y+ GKLQP
Sbjct:   16 ELRALNARFIHNFVTSDVPSHDAILHPSFINIWPTGQRWDRATYLKYWATAFDPDVIVYWDVRDELITVVGDVALVRSTNKYIRRRDGSEVTGMTTYTDTYLFENGAWKCIQAQLTAVAPEHYPADDTIVSVYIEGKLQP 155          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: UPI001BA76A95 (DUF4440 domain-containing protein n=8 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA76A95)

HSP 1 Score: 191 bits (484), Expect = 9.700e-60
Identity = 95/140 (67.86%), Postives = 105/140 (75.00%), Query Frame = 1
Query:   22 ELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQP 441
            ELRALNARFIHNF+TNDV SHDAILH  FI I P G R  RA YLK WAT FD + IPY+D RDELI V G  AL+RSTNK+ R  DG E  GMTMYTD Y+ ++GAWKCIQAQI  VAP  YP D+TIV  Y+ GKLQP
Sbjct:   16 ELRALNARFIHNFVTNDVASHDAILHPAFISIWPTGKRWDRATYLKYWATAFDPKLIPYWDVRDELITVIGDVALVRSTNKATRRSDGNEVTGMTMYTDTYLFENGAWKCIQAQIQAVAPEFYPADDTIVSVYIEGKLQP 155          
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Match: UPI001BADBFF7 (DUF4440 domain-containing protein n=1 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001BADBFF7)

HSP 1 Score: 190 bits (483), Expect = 1.330e-59
Identity = 91/140 (65.00%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   22 ELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKAWATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMYTDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQP 441
            ELRA+NARFIHNF+T+DV SHDA+LH DFI I P G R  RA YLK WAT FD + I Y+D RDELI V G  AL+RSTNK +R +DG +  GMT YTD Y+ ++GAWKCIQAQ+TPVAP +YP D+TIV  Y+ GKLQP
Sbjct:   15 ELRAINARFIHNFVTSDVASHDALLHPDFINIWPTGQRWDRASYLKYWATAFDPKIIIYWDVRDELITVIGDVALVRSTNKHVRRRDGKDVTGMTTYTDTYLFENGAWKCIQAQLTPVAPEHYPADDTIVSVYIEGKLQP 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7887.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F2ZZW9_9PROT3.740e-9593.01DUF4440 domain-containing protein n=2 Tax=Alphapro... [more]
A0A521KX29_9HYPH3.280e-8986.99Nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI001C21976E4.860e-8281.82DUF4440 domain-containing protein n=1 Tax=Reyranel... [more]
UPI001E5672B31.390e-8182.52nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A537MZQ3_9PROT6.610e-8079.58Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A1H8NQL6_9PROT1.280e-7777.46DUF4440 domain-containing protein n=3 Tax=Alphapro... [more]
A0A5C5T5C7_9HYPH1.100e-6367.63Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A7Z2PTF8_9BRAD9.700e-6067.14DUF4440 domain-containing protein n=3 Tax=Bradyrhi... [more]
UPI001BA76A959.700e-6067.86DUF4440 domain-containing protein n=8 Tax=Bradyrhi... [more]
UPI001BADBFF71.330e-5965.00DUF4440 domain-containing protein n=1 Tax=Bradyrhi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7887contigP-wetherbeei_contig7887:2384..2827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000002_gene457
PFAMsDUF4440
Model size444
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.66e-56
EggNOG OGs2CFKF@1|root,34BJX@2|Bacteria
DescriptionSnoaL-like domain
Cds size432
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.7270021-UTR-P-wetherbeei_contig7887:2383..23951683187006.7270021-UTR-P-wetherbeei_contig7887:2383..2395Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7887 2384..2395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.740963-CDS-P-wetherbeei_contig7887:2395..28271683187006.740963-CDS-P-wetherbeei_contig7887:2395..2827Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7887 2396..2827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7887.3.1prot_P-wetherbeei_contig7887.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7887 2396..2827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7887.3.1

>prot_P-wetherbeei_contig7887.3.1 ID=prot_P-wetherbeei_contig7887.3.1|Name=mRNA_P-wetherbeei_contig7887.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MTAELRALNARFIHNFITNDVPSHDAILHKDFICITPAGGRVGRADYLKA
WATGFDAERIPYFDYRDELIHVFGATALLRSTNKSIRVKDGVESIGMTMY
TDAYVHQDGAWKCIQAQITPVAPANYPPDETIVKKYVRGKLQP*
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mRNA from alignment at P-wetherbeei_contig7887:2384..2827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7887.3.1 ID=mRNA_P-wetherbeei_contig7887.3.1|Name=mRNA_P-wetherbeei_contig7887.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig7887:2384..2827+ (Phaeothamnion wetherbeei SAG_119_79)
CGGAGGCTAGCCATGACTGCAGAGCTGCGCGCGCTCAACGCCAGGTTCAT CCATAACTTCATCACCAACGACGTGCCCTCGCACGACGCCATCCTGCACA AGGATTTCATCTGCATCACGCCAGCGGGCGGCCGCGTCGGCCGGGCCGAC TATCTGAAGGCCTGGGCGACCGGCTTCGACGCCGAGCGCATCCCCTACTT CGACTATCGCGACGAACTCATCCATGTGTTTGGCGCGACAGCGCTGCTGC GCTCGACCAACAAGAGCATCAGGGTCAAGGACGGCGTCGAGAGCATAGGC ATGACGATGTACACCGACGCCTATGTTCACCAGGACGGCGCGTGGAAATG CATCCAGGCGCAGATCACGCCGGTGGCGCCCGCCAACTACCCGCCCGACG AAACGATCGTGAAGAAATACGTCAGGGGAAAGCTCCAGCCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7887:2384..2827+

>mRNA_P-wetherbeei_contig7887.3.1 ID=mRNA_P-wetherbeei_contig7887.3.1|Name=mRNA_P-wetherbeei_contig7887.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig7887:2384..2827+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCAGAGCTGCGCGCGCTCAACGCCAGGTTCATCCATAACTTCAT
CACCAACGACGTGCCCTCGCACGACGCCATCCTGCACAAGGATTTCATCT
GCATCACGCCAGCGGGCGGCCGCGTCGGCCGGGCCGACTATCTGAAGGCC
TGGGCGACCGGCTTCGACGCCGAGCGCATCCCCTACTTCGACTATCGCGA
CGAACTCATCCATGTGTTTGGCGCGACAGCGCTGCTGCGCTCGACCAACA
AGAGCATCAGGGTCAAGGACGGCGTCGAGAGCATAGGCATGACGATGTAC
ACCGACGCCTATGTTCACCAGGACGGCGCGTGGAAATGCATCCAGGCGCA
GATCACGCCGGTGGCGCCCGCCAACTACCCGCCCGACGAAACGATCGTGA
AGAAATACGTCAGGGGAAAGCTCCAGCCCTAG
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