mRNA_P-wetherbeei_contig7800.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7800.1.1
Unique NamemRNA_P-wetherbeei_contig7800.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: A0A3C0TS02_9PROT (DUF2244 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TS02_9PROT)

HSP 1 Score: 246 bits (627), Expect = 1.500e-80
Identity = 123/174 (70.69%), Postives = 143/174 (82.18%), Query Frame = 1
Query:   22 ASRITPEISADSAAGRTAGGLHFDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKALARNRTHLYA 543
            A+ + PEI+ + AAGRTAGGL FDAVLYP+R+LGP GF+ +M  ++  SF AG   +L GAWPV+GFFGLDV+LIY AFRINFR+GRIYETVQLDDA LLIRRFLPDGRILSWN Q+YWA+VELI    + PLLAVRSHGKYLVFGNFLT EER  FA ALR+AL+R R  +YA
Sbjct:   11 ANPLLPEITEEGAAGRTAGGLQFDAVLYPNRALGPAGFLLVMAGVSGLSFFAGAMAWLAGAWPVMGFFGLDVLLIYIAFRINFRAGRIYETVQLDDASLLIRRFLPDGRILSWNFQSYWAKVELIERAQNLPLLAVRSHGKYLVFGNFLTGEERAAFAAALRQALSRQRAMVYA 184          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: A0A353LPS6_9PROT (DUF2244 domain-containing protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LPS6_9PROT)

HSP 1 Score: 197 bits (500), Expect = 2.070e-61
Identity = 94/145 (64.83%), Postives = 118/145 (81.38%), Query Frame = 1
Query:   82 LHFDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKAL 516
            L+FDAVL+PH SLG RGF+ LM  ++  SF AGL+F+LMGAWPV+GFFGLDV+LIY AFR++FR  R+YETV+L D+ L IRR LP+G+++ W  Q YWA+VELI      PLLA+RSHGKYLVFG+FLTA+ER +FA ALR+AL
Sbjct:    9 LYFDAVLHPHASLGRRGFLALMLFVSGVSFTAGLAFFLMGAWPVVGFFGLDVLLIYIAFRVSFRRARLYETVELSDSELAIRRHLPNGQVVKWTFQPYWARVELIGKAIGGPLLAIRSHGKYLVFGSFLTADERSDFADALREAL 153          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: A0A2A5ELP9_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ELP9_9HYPH)

HSP 1 Score: 163 bits (413), Expect = 3.200e-48
Identity = 84/149 (56.38%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   82 LHFDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKALARNR 528
            LHFDA L PHR+LG RGF+ +M  +   SFVAGL+F LMGAWPV GFFGLDV LIYFAFR N+RS R YETVQL DA L IR+   DG  L+W  + YWA+V           +A+ SHG+ ++ G+FL  EER +F  ALR  LAR R
Sbjct:   14 LHFDARLSPHRALGRRGFLIVMALVISVSFVAGLTFTLMGAWPVFGFFGLDVALIYFAFRHNYRSARAYETVQLSDAALKIRKVAADGSALAWRFEPYWARVSFDRQAEDEVKVAITSHGQQVIVGDFLAPEERIQFGDALRGELARFR 162          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: A0A6N6T2Z5_9HYPH (DUF2244 domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T2Z5_9HYPH)

HSP 1 Score: 158 bits (400), Expect = 2.560e-46
Identity = 78/143 (54.55%), Postives = 100/143 (69.93%), Query Frame = 1
Query:   88 FDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKAL 516
            F AVL PHRSLGPRGF+  M  +   SF++G+ FYLMGAWPV GFFGLDV+++Y AFR+N+R+GRIYETV L  A L +RR  P GR   ++   YWA+V L         L + SHG+ L FG FLT +ER++FA AL++AL
Sbjct:   15 FHAVLTPHRSLGPRGFLLFMAAIAGISFISGVVFYLMGAWPVSGFFGLDVLVVYIAFRLNYRAGRIYETVDLTPAALTLRRVHPSGRTEQFDCNPYWARVNLREWPDGRTDLRIASHGRELAFGRFLTDDERRDFAGALKQAL 157          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: A0A1E3WB36_9HYPH (Uncharacterized protein n=1 Tax=Methyloceanibacter marginalis TaxID=1774971 RepID=A0A1E3WB36_9HYPH)

HSP 1 Score: 156 bits (395), Expect = 1.600e-45
Identity = 77/151 (50.99%), Postives = 99/151 (65.56%), Query Frame = 1
Query:   64 GRTAGGLHFDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKAL 516
            G   G   F AVL P+RSLGPRGF+  M  ++  SF  GL FYLMGAWPV+GF GLDV+L+Y AFR+NFR+ R+YETV L +  L + R  P GR  SW    YW ++ L         L++ SHG+ LVF +FLT  ER++FA AL++AL
Sbjct:   10 GAANGDPQFSAVLTPNRSLGPRGFLVFMAAISTASFATGLMFYLMGAWPVMGFMGLDVLLVYIAFRVNFRALRLYETVDLTEDALTVTRVAPSGRAQSWRFNPYWVRLNLDERVGRTSELSIASHGERLVFASFLTDPEREDFAGALKEAL 160          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: A0A2E6QE90_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QE90_9PROT)

HSP 1 Score: 155 bits (393), Expect = 3.640e-45
Identity = 78/147 (53.06%), Postives = 102/147 (69.39%), Query Frame = 1
Query:   88 FDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKALARNR 528
            FDAVLYPHRSLG RGF   M+ +   S   G  F+LMGAWPV GF GLDV+LI+ AFR N+R  R+ ETV+L    L ++RFLPDGR+ +W+ Q YW +VE+         L++ SHG+ L+ G+FL+ EER +FA ALR+AL+R R
Sbjct:   20 FDAVLYPHRSLGRRGFRIFMSAVIAVSLALGGGFWLMGAWPVFGFMGLDVLLIFLAFRSNYRHARLSETVRLTREKLTVQRFLPDGRVRAWDFQPYWLRVEIDRPEEHDCQLSIASHGQKLIIGSFLSPEERLDFAKALREALSRCR 166          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: UPI000B4B4156 (DUF2244 domain-containing protein n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI000B4B4156)

HSP 1 Score: 155 bits (391), Expect = 5.380e-45
Identity = 75/144 (52.08%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   85 HFDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKAL 516
            HF AVL PHRSLG +GF+TLM+ ++  SF+ G++FYL GAWPV GFFGLDV+L+Y AF++N+R+ R+YETV+L D  L + R  P GR  SW+   YW ++EL     +A  L++RSHG+ L  G FL+ +E++ FA AL  AL
Sbjct:   12 HFSAVLLPHRSLGRKGFITLMSVISGVSFLTGIAFYLKGAWPVFGFFGLDVLLVYGAFKLNYRAARLYETVELTDEQLTVTRIHPSGRAESWSFNPYWVRLELEEIDNAANRLSLRSHGRELRIGTFLSDDEKRGFAHALGAAL 155          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: A0A0A8JY85_9HYPH (Uncharacterized protein n=3 Tax=Methyloceanibacter TaxID=1484898 RepID=A0A0A8JY85_9HYPH)

HSP 1 Score: 155 bits (391), Expect = 6.270e-45
Identity = 77/143 (53.85%), Postives = 98/143 (68.53%), Query Frame = 1
Query:   88 FDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKAL 516
            F AVL PHRSLGP+GF+  M  ++  SF  GL F+LMGAWP+LGF GLDV+L+Y AFRINFR+ R+YETV L D  L + R  P+G+  SW    YW +V +      +  L++ SHGK LVFG FLT  ER++FA AL+ AL
Sbjct:   18 FRAVLTPHRSLGPKGFVIFMAAISAVSFGTGLMFFLMGAWPILGFMGLDVLLVYVAFRINFRALRVYETVALTDEALTVTRVAPNGKEQSWRFNPYWVRVRVEERVGLSSELSLASHGKRLVFGAFLTDPEREDFADALKAAL 160          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: A0A6I0EGT3_HYPSQ (DUF2244 domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EGT3_HYPSQ)

HSP 1 Score: 155 bits (391), Expect = 8.500e-45
Identity = 80/147 (54.42%), Postives = 95/147 (64.63%), Query Frame = 1
Query:   88 FDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKALARNR 528
            F AVLYPHRSLGPRGF+ LM  +   SF+ G+ F LMGAWPV GFFGLDVVLIY AFR+N+RSGRIYE V+L    L + R  P GR  S+    YW +V L         L + SHG    F  FLT +ER++F+ AL  ALAR R
Sbjct:   30 FRAVLYPHRSLGPRGFLILMLAIGAVSFITGMVFLLMGAWPVFGFFGLDVVLIYIAFRLNYRSGRIYEMVELTREALTVTRVHPSGRPESFAFNPYWVRVHLAEGPQGRTDLRLASHGDEFAFARFLTDDERRDFSNALSGALARTR 176          
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Match: UPI0019940B4D (DUF2244 domain-containing protein n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019940B4D)

HSP 1 Score: 154 bits (390), Expect = 9.740e-45
Identity = 77/148 (52.03%), Postives = 99/148 (66.89%), Query Frame = 1
Query:   88 FDAVLYPHRSLGPRGFMTLMTCLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQLDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYLVFGNFLTAEERKEFATALRKALARNRT 531
            F AVL PHRSLGP+GFM LM  +   SF  GL FYL+GAWPV+GF GLDV LIY AFR+NFR+ R YETV L    L + R  P G++ SW+   YW ++ L      +  L++ SHG+ LV  +FL+ EER++FA+AL  ALA  R+
Sbjct:   19 FSAVLTPHRSLGPKGFMVLMAAVCAVSFATGLFFYLLGAWPVIGFMGLDVALIYVAFRLNFRALRRYETVDLTQDALTVTRVAPSGKLQSWSFNPYWVRISLAPRLGRSSELSLASHGRRLVLASFLSDEEREDFASALSAALASARS 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7800.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TS02_9PROT1.500e-8070.69DUF2244 domain-containing protein n=1 Tax=Alphapro... [more]
A0A353LPS6_9PROT2.070e-6164.83DUF2244 domain-containing protein n=3 Tax=Alphapro... [more]
A0A2A5ELP9_9HYPH3.200e-4856.38Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A0A6N6T2Z5_9HYPH2.560e-4654.55DUF2244 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A1E3WB36_9HYPH1.600e-4550.99Uncharacterized protein n=1 Tax=Methyloceanibacter... [more]
A0A2E6QE90_9PROT3.640e-4553.06Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
UPI000B4B41565.380e-4552.08DUF2244 domain-containing protein n=1 Tax=Rhodomic... [more]
A0A0A8JY85_9HYPH6.270e-4553.85Uncharacterized protein n=3 Tax=Methyloceanibacter... [more]
A0A6I0EGT3_HYPSQ8.500e-4554.42DUF2244 domain-containing protein n=1 Tax=Hyphomic... [more]
UPI0019940B4D9.740e-4552.03DUF2244 domain-containing protein n=1 Tax=Methyloc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7800contigP-wetherbeei_contig7800:999..1544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1282876.BAOK01000002_gene142
PFAMsDUF2244
Model size546
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.3e-42
EggNOG OGsCOG5488@1|root,COG5488@2|Bacteria,1NPQQ@1224|Proteobacteria,2UB81@28211|Alphaproteobacteria
Descriptionintegral membrane protein
Cds size546
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.4381623-CDS-P-wetherbeei_contig7800:998..15441683187001.4381623-CDS-P-wetherbeei_contig7800:998..1544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7800 999..1544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7800.1.1prot_P-wetherbeei_contig7800.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7800 999..1544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7800.1.1

>prot_P-wetherbeei_contig7800.1.1 ID=prot_P-wetherbeei_contig7800.1.1|Name=mRNA_P-wetherbeei_contig7800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MNAHTNIASRITPEISADSAAGRTAGGLHFDAVLYPHRSLGPRGFMTLMT
CLTVFSFVAGLSFYLMGAWPVLGFFGLDVVLIYFAFRINFRSGRIYETVQ
LDDACLLIRRFLPDGRILSWNLQAYWAQVELIAATPSAPLLAVRSHGKYL
VFGNFLTAEERKEFATALRKALARNRTHLYA*
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mRNA from alignment at P-wetherbeei_contig7800:999..1544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7800.1.1 ID=mRNA_P-wetherbeei_contig7800.1.1|Name=mRNA_P-wetherbeei_contig7800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig7800:999..1544- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCTCACACGAACATCGCATCCAGGATCACACCGGAAATTTCCGC TGACAGCGCCGCCGGGCGCACGGCAGGCGGATTGCATTTTGACGCCGTGC TGTATCCGCATCGCTCCCTGGGGCCGCGTGGTTTTATGACCTTGATGACG TGCCTCACGGTGTTCAGTTTTGTTGCGGGTCTTTCTTTTTATCTGATGGG CGCATGGCCAGTGCTGGGGTTTTTCGGTCTTGATGTGGTGCTGATCTATT TCGCGTTCCGGATAAATTTCCGCAGCGGGCGGATTTATGAAACCGTACAG CTTGATGACGCCTGCCTTCTGATCCGGCGTTTCCTTCCCGATGGACGTAT TCTTAGCTGGAACCTGCAGGCCTATTGGGCGCAGGTCGAACTGATCGCCG CAACGCCAAGCGCCCCCCTGCTTGCAGTACGCTCGCATGGAAAATATCTG GTATTCGGAAATTTCCTGACAGCGGAAGAACGCAAGGAATTCGCCACCGC TTTGCGCAAGGCCCTTGCGCGCAATCGCACCCACCTCTACGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7800:999..1544-

>mRNA_P-wetherbeei_contig7800.1.1 ID=mRNA_P-wetherbeei_contig7800.1.1|Name=mRNA_P-wetherbeei_contig7800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig7800:999..1544- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCTCACACGAACATCGCATCCAGGATCACACCGGAAATTTCCGC
TGACAGCGCCGCCGGGCGCACGGCAGGCGGATTGCATTTTGACGCCGTGC
TGTATCCGCATCGCTCCCTGGGGCCGCGTGGTTTTATGACCTTGATGACG
TGCCTCACGGTGTTCAGTTTTGTTGCGGGTCTTTCTTTTTATCTGATGGG
CGCATGGCCAGTGCTGGGGTTTTTCGGTCTTGATGTGGTGCTGATCTATT
TCGCGTTCCGGATAAATTTCCGCAGCGGGCGGATTTATGAAACCGTACAG
CTTGATGACGCCTGCCTTCTGATCCGGCGTTTCCTTCCCGATGGACGTAT
TCTTAGCTGGAACCTGCAGGCCTATTGGGCGCAGGTCGAACTGATCGCCG
CAACGCCAAGCGCCCCCCTGCTTGCAGTACGCTCGCATGGAAAATATCTG
GTATTCGGAAATTTCCTGACAGCGGAAGAACGCAAGGAATTCGCCACCGC
TTTGCGCAAGGCCCTTGCGCGCAATCGCACCCACCTCTACGCCTGA
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