mRNA_P-wetherbeei_contig7686.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7686.1.1
Unique NamemRNA_P-wetherbeei_contig7686.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: A0A024UKQ3_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKQ3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.220e-25
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 2
Query:    5 CRKCRRVLFGASQLEDHQPARHDFSKRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYACSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVDERLPMA 415
            CR CR +LF +  L +H+P RH  S+RK                             + + K GA +  CSSYFL++   WM +    EGK+ C  A C +RLGS+ W+GSQCSCGTWVTP++Q T SRVD ++ MA
Sbjct:   47 CRMCRALLFTSDDLMEHEPQRHQISQRKK----------------------------LKEAKLGAVE--CSSYFLSDTKEWMDEASLAEGKLFCPVAKCNSRLGSFGWSGSQCSCGTWVTPSVQFTKSRVDVKVKMA 153          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: D0N5N4_PHYIT (C2H2-type domain-containing protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0N5N4_PHYIT)

HSP 1 Score: 107 bits (267), Expect = 1.230e-25
Identity = 62/151 (41.06%), Postives = 79/151 (52.32%), Query Frame = 2
Query:    2 ACRKCRRVLFGASQLEDHQPARHDFSKRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYACSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVD-----ERLPMASGVDTPGA 439
            AC+KCR VLF + QL  H+P +H  S R+                  K + L             ++  ACSSYFL E   WM +    EGKI C T  C +RLG+ +W+GSQCSCGTWVTP+I+IT SRVD       L + +GV  P A
Sbjct:   18 ACKKCRSVLFKSDQLTPHEPEQHQISTRR------------------KLKDLKHQV---------SAHVACSSYFLEETLPWMDEALLAEGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVDAVFKQSNLNIVTGVGLPNA 141          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: H3GIL9_PHYRM (C2H2-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIL9_PHYRM)

HSP 1 Score: 107 bits (267), Expect = 1.460e-25
Identity = 64/150 (42.67%), Postives = 82/150 (54.67%), Query Frame = 2
Query:    2 ACRKCRRVLFGASQLEDHQPARHDFS-KRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYACSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVDERLPMAS-----GVDTP 433
            AC+KCR +LF + QL  H+P RH  S +RK+ +L                Q +  P               CSSYFL E   WM +    EGKI C TA C +RLG+ +W+GSQCSCGTWVTP+I+IT SRVD  LP ++     GV+ P
Sbjct:   29 ACKKCRCMLFTSEQLAPHEPERHQISTRRKLKDLK---------------QQVGGPV-------------DCSSYFLDETLPWMDEALLAEGKIHCPTAKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVDPVLPQSNVKIVTGVELP 150          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: W4G7N2_9STRA (C2H2-type domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7N2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.110e-25
Identity = 62/163 (38.04%), Postives = 80/163 (49.08%), Query Frame = 2
Query:    5 CRKCRRVLFGASQLEDHQPARHDFSKRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYACSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVDERLPM-------------ASGVDTPGAVVHAS 454
            CR CR +LF +  L  H+P +H  S+RK                             + + K GA    CSS+FL +   WM +    EGK++C  A C ARLGS+ W+GSQCSCGTWVTP++Q T SRVD +L M              + V  P AVV AS
Sbjct:   13 CRMCRVLLFTSDDLLQHEPQKHQISQRKK----------------------------LKESKLGAVD--CSSFFLVDTKEWMDEASLAEGKLLCPVAKCNARLGSFGWSGSQCSCGTWVTPSVQFTKSRVDVKLKMNIQAVYVPVVESAVAAVGAPAAVVEAS 145          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: A0A6G0X4R1_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4R1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.170e-25
Identity = 63/167 (37.72%), Postives = 84/167 (50.30%), Query Frame = 2
Query:    5 CRKCRRVLFGASQLEDHQPARHDFSKRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYA-CSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVDERLPM-ASGVDTPGAVVHASVLKTERLGNEKDATK 499
            CR CR  LF +  L +H+P +H  S RK                               +LK G      C+S+FLAE   WM +    EGK+ C  A C +RLGS+ W+GSQCSCGTWVTP+IQIT SRVD ++ M    V  P  V+  +V  TE +    ++T+
Sbjct:   12 CRMCRTKLFTSDDLMEHEPQKHQISTRK-------------------------------KLKEGKIGIVDCNSFFLAETKEWMDEAHLAEGKLFCPLAKCNSRLGSFDWSGSQCSCGTWVTPSIQITKSRVDPKIKMHIPSVFVP--VIAPTVAATEEVNQAVESTE 145          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: V9G2Z6_PHYPR (C2H2-type domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9G2Z6_PHYPR)

HSP 1 Score: 105 bits (263), Expect = 8.120e-25
Identity = 65/152 (42.76%), Postives = 82/152 (53.95%), Query Frame = 2
Query:    2 ACRKCRRVLFGASQLEDHQPARHDFS-KRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYACSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVD-----ERLPMASGVDTPGA 439
            AC+KCR VLF + QL  H+P +H  S +RK+ +L      K + G  V                      ACSSYFL E   WM +    EGKI C T  C +RLG+ +W+GSQCSCGTWVTP+I+IT SRVD       L + +GV  P A
Sbjct:   32 ACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDL------KHSVGANV----------------------ACSSYFLEETLSWMDEALLAEGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVDAVFKQSNLNIVTGVVLPNA 155          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: A0A485L5N9_9STRA (Aste57867_16448 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5N9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.830e-25
Identity = 57/136 (41.91%), Postives = 71/136 (52.21%), Query Frame = 2
Query:    5 CRKCRRVLFGASQLEDHQPARHDFSKRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYACSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVDERLPM 412
            CR CR  LF +  L +H P +H  S RK                             I + K GA +  CSSYFLA+   WM +    +GKI C  A C +RLGS+ W+GSQCSCGTW+TP+IQ T SRVD +L M
Sbjct:   12 CRMCRHHLFTSDDLMEHAPQQHQISMRKK----------------------------IKEGKLGAPE--CSSYFLADTKDWMDENAVADGKIFCPVAKCNSRLGSFNWSGSQCSCGTWITPSIQFTKSRVDVKLKM 117          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: A0A225V835_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V835_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.030e-24
Identity = 64/151 (42.38%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 ACRKCRRVLFGASQLEDHQPARHDFSKRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYACSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVD-----ERLPMASGVDTPGA 439
            AC+KCR VLF + QL  H+P +H  S R+                  K + L           AGA+  ACSS FL E   WM +    EGK+ C TA C +RLG+ +W+GSQCSCGTWVTP+I+IT SRVD       L + +GV  P A
Sbjct:   28 ACKKCRCVLFTSEQLAPHEPEQHQISTRR------------------KLKDLRH--------SAGAN-VACSSLFLEETLPWMDEALLAEGKVHCPTAKCHSRLGALQWSGSQCSCGTWVTPSIKITKSRVDAVFKQSNLNIVTGVVLPNA 151          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: G4YYY9_PHYSP (C2H2-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YYY9_PHYSP)

HSP 1 Score: 103 bits (258), Expect = 4.120e-24
Identity = 62/152 (40.79%), Postives = 78/152 (51.32%), Query Frame = 2
Query:    2 ACRKCRRVLFGASQLEDHQPARHDFSKRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYA-CSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVD-----ERLPMASGVDTPGA 439
            AC+KCR VLF + QL  H+P RH  S R+                             +  LK     +  CSS+FL E   WM +    EGKI C TA C +RLG+ +W+GSQCSCGTWVTP+I+IT SRVD       L + +GV  P A
Sbjct:   27 ACKKCRCVLFTSEQLTPHEPERHQISARR----------------------------RLKDLKHQVGGHVDCSSFFLEETLPWMDEALLAEGKIHCPTAKCQSRLGALQWSGSQCSCGTWVTPSIKITQSRVDAVIKQSNLNIVTGVVLPNA 150          
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Match: A0A2P4XRV7_9STRA (Tyrosine protein phosphatase 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRV7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.570e-24
Identity = 65/152 (42.76%), Postives = 81/152 (53.29%), Query Frame = 2
Query:    2 ACRKCRRVLFGASQLEDHQPARHDFS-KRKVGNLVVKAEVK*AFGIGVKFQHLSRPAALITQLKAGASKYACSSYFLAERALWMGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVDE-----RLPMASGVDTPGA 439
            AC+KCR VLF + QL  H+P +H  S +RK+ +L      K   G  V+                      CSSYFL E   WM +    EGKI C +A C ARLG+ +W+GSQCSCGTWVTP+I+IT SRVD       L +  GV  P A
Sbjct:   24 ACKKCRCVLFTSEQLALHEPEQHQISARRKLKDL------KHHVGTNVE----------------------CSSYFLEETLSWMDEALLAEGKIHCPSAKCQARLGALQWSGSQCSCGTWVTPSIKITKSRVDAVVKQTNLNIVHGVVLPSA 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7686.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024UKQ3_9STRA1.220e-2540.88C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
D0N5N4_PHYIT1.230e-2541.06C2H2-type domain-containing protein n=3 Tax=Phytop... [more]
H3GIL9_PHYRM1.460e-2542.67C2H2-type domain-containing protein n=1 Tax=Phytop... [more]
W4G7N2_9STRA2.110e-2538.04C2H2-type domain-containing protein n=3 Tax=Aphano... [more]
A0A6G0X4R1_9STRA3.170e-2537.72C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
V9G2Z6_PHYPR8.120e-2542.76C2H2-type domain-containing protein n=10 Tax=Phyto... [more]
A0A485L5N9_9STRA8.830e-2541.91Aste57867_16448 protein n=1 Tax=Aphanomyces stella... [more]
A0A225V835_9STRA1.030e-2442.38Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
G4YYY9_PHYSP4.120e-2440.79C2H2-type domain-containing protein n=4 Tax=Phytop... [more]
A0A2P4XRV7_9STRA6.570e-2442.76Tyrosine protein phosphatase 2 n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7686contigP-wetherbeei_contig7686:1194..2389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKT1
PFAMsDSPc
Model size745
Max annot lvl2759|Eukaryota
KEGG koko:K09054,ko:K14165,ko:K14819
KEGG Pathwayko04141,ko05010,map04141,map05010
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.93e-18
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota
Ec32 ortholog descriptionDual specificity protein phosphatase
Ec32 orthologEc-11_005420.1
EC3.1.3.16,3.1.3.48
Descriptionprotein tyrosine/serine/threonine phosphatase activity
Cds size411
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko03000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.6395414-UTR-P-wetherbeei_contig7686:1193..12801683186994.6395414-UTR-P-wetherbeei_contig7686:1193..1280Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7686 1194..1280 -
1683186994.6845038-UTR-P-wetherbeei_contig7686:2142..23891683186994.6845038-UTR-P-wetherbeei_contig7686:2142..2389Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7686 2143..2389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.6518402-CDS-P-wetherbeei_contig7686:1280..15621683186994.6518402-CDS-P-wetherbeei_contig7686:1280..1562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7686 1281..1562 -
1683186994.6627424-CDS-P-wetherbeei_contig7686:1784..18631683186994.6627424-CDS-P-wetherbeei_contig7686:1784..1863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7686 1785..1863 -
1683186994.673271-CDS-P-wetherbeei_contig7686:2092..21421683186994.673271-CDS-P-wetherbeei_contig7686:2092..2142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7686 2093..2142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7686.1.1prot_P-wetherbeei_contig7686.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7686 1281..2142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7686.1.1

>prot_P-wetherbeei_contig7686.1.1 ID=prot_P-wetherbeei_contig7686.1.1|Name=mRNA_P-wetherbeei_contig7686.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MGDMGDVEGKIVCATASCGARLGSYKWAGSQCSCGTWVTPAIQITGSRVD
ERLPMASGVDTPGAVVHASVLKTERLGNEKDATKEPPPPPTLEQEEASKK
TMPPAAFPPAPSDAAAASKLTTQEVDGGNKTEGIGE*
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mRNA from alignment at P-wetherbeei_contig7686:1194..2389-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7686.1.1 ID=mRNA_P-wetherbeei_contig7686.1.1|Name=mRNA_P-wetherbeei_contig7686.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1196bp|location=Sequence derived from alignment at P-wetherbeei_contig7686:1194..2389- (Phaeothamnion wetherbeei SAG_119_79)
TGCTTGCCGGAAGTGCCGGCGCGTGCTCTTCGGTGCGTCGCAGCTTGAAG ATCATCAGCCCGCCCGGCATGACTTCTCTAAACGCAAGGTAGGAAACCTT GTCGTGAAAGCAGAAGTGAAATAAGCATTCGGTATTGGAGTCAAGTTCCA ACATCTCTCCCGGCCGGCCGCCCTGATAACACAGTTAAAGGCCGGGGCGA GCAAATACGCATGCTCGTCTTACTTCCTCGCCGAGCGTGCCCTTTGGATG GGTGACATGGGGGACGTCGAAGGGAAGATCGTCTGCGCCACCGCCAGGTA CGTCTGCTAGAAGCGTTGTGCTTTGTAGCAAGGTGCTTTTCTTATGTCTC TTTTTTGTCCTTGCTGTAGGTGTATATATGTGCTGGTCCGAACTATTGGA AACTTGCTCTCTAAAATTACAAACTGGCGGCGCACATTGCGCACATTCCA GAAGAATCTGTGGCGTGTGTGTTTGTAATGTCAGTCTCATATCTCATGCC TTTGCTTTTTTCCTCTTGGCTCTCAGCTGCGGCGCTCGGCTGGGAAGCTA CAAGTGGGCGGGCTCGCAGTGCTCCTGCGGGACGTGGGTGACACCGGCGA TACAGGTCAGTGACCAGAATTTGCTGTGCTCTCATTCCATTCTCTGGTCG AACGCGCATCTTTGGCCAATGCATATTAACAAGACTCTTACTTTTGTCCA GAGCCGTGGCAGTAGAAGCAGGTATAACCACACACTGCCACTGCCAAACT GCGAGACGCATCGAAACAAACATCAAACGCGCAAATTGCTGTTTTCCCCC GATCGCTGCGTGGTTTCCCTTGCCTAGATCACCGGCAGTCGAGTGGACGA GCGCTTGCCAATGGCCAGCGGCGTTGACACCCCGGGCGCGGTCGTCCATG CATCCGTTCTGAAGACCGAGCGTCTCGGGAATGAGAAAGACGCAACAAAG GAGCCGCCGCCACCACCAACACTGGAGCAAGAGGAGGCCTCGAAAAAGAC AATGCCGCCGGCGGCATTTCCGCCAGCGCCGTCAGACGCTGCGGCAGCGA GCAAACTGACAACGCAAGAAGTGGACGGTGGTAACAAAACTGAAGGGATC GGTGAGTAAATGAAGAAAGACTCGAAACGTCATTTTTTGCCACATTACAA TGATATTTGTGCAAAGTGGCAGTTCCACTTTGGTGGAAGCGGCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7686:1194..2389-

>mRNA_P-wetherbeei_contig7686.1.1 ID=mRNA_P-wetherbeei_contig7686.1.1|Name=mRNA_P-wetherbeei_contig7686.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig7686:1194..2389- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGACATGGGGGACGTCGAAGGGAAGATCGTCTGCGCCACCGCCAG
CTGCGGCGCTCGGCTGGGAAGCTACAAGTGGGCGGGCTCGCAGTGCTCCT
GCGGGACGTGGGTGACACCGGCGATACAGATCACCGGCAGTCGAGTGGAC
GAGCGCTTGCCAATGGCCAGCGGCGTTGACACCCCGGGCGCGGTCGTCCA
TGCATCCGTTCTGAAGACCGAGCGTCTCGGGAATGAGAAAGACGCAACAA
AGGAGCCGCCGCCACCACCAACACTGGAGCAAGAGGAGGCCTCGAAAAAG
ACAATGCCGCCGGCGGCATTTCCGCCAGCGCCGTCAGACGCTGCGGCAGC
GAGCAAACTGACAACGCAAGAAGTGGACGGTGGTAACAAAACTGAAGGGA
TCGGTGAGTAA
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