mRNA_P-wetherbeei_contig7508.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7508.1.1
Unique NamemRNA_P-wetherbeei_contig7508.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig7508.1.1 vs. uniprot
Match: K0RWQ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWQ5_THAOC)

HSP 1 Score: 72.4 bits (176), Expect = 1.640e-9
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:  581 WMGSHDEYCYVCFAGGKLLCCDFCSVAVHGKCLLPPRPRAPAGRWLCPQC 730
            + G HD+ CY+C+ GG LLCCD+CS A H KC LPP    P G W C +C
Sbjct:  686 FKGEHDDTCYMCYQGGDLLCCDYCSKAYHMKCHLPPLTEIPEGNWKCQEC 735
[Close]
BLAST of mRNA_P-wetherbeei_contig7508.1.1 vs. uniprot
Match: UPI001D0819DD (bromodomain adjacent to zinc finger domain protein 1A isoform X1 n=2 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0819DD)

HSP 1 Score: 57.8 bits (138), Expect = 5.510e-5
Identity = 22/44 (50.00%), Postives = 27/44 (61.36%), Query Frame = 2 
Query:  599 EYCYVCFAGGKLLCCDFCSVAVHGKCLLPPRPRAPAGRWLCPQC 730
            E C VC  GG+++CCD CS+  H +CL PP  R P G W C  C
Sbjct: 1153 EVCEVCKEGGRVICCDSCSIMYHPECLDPPLRRVPRGTWHCSDC 1196
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7508.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
K0RWQ5_THAOC1.640e-954.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
UPI001D0819DD5.510e-550.00bromodomain adjacent to zinc finger domain protein... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7508contigP-wetherbeei_contig7508:669..2948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0RWQ5
PFAMsPHD,zf-CXXC
Model size1638
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.6e-10
EggNOG OGsCOG0553@1|root,COG2940@1|root,KOG0383@2759|Eukaryota,KOG1084@2759|Eukaryota,2XF8R@2836|Bacillariophyta
DescriptionCXXC zinc finger domain
Cds size1611
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.5745084-UTR-P-wetherbeei_contig7508:668..6931683186985.5745084-UTR-P-wetherbeei_contig7508:668..693Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7508 669..693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.5856726-CDS-P-wetherbeei_contig7508:693..8791683186985.5856726-CDS-P-wetherbeei_contig7508:693..879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7508 694..879 +
1683186985.5980573-CDS-P-wetherbeei_contig7508:1106..15261683186985.5980573-CDS-P-wetherbeei_contig7508:1106..1526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7508 1107..1526 +
1683186985.6070077-CDS-P-wetherbeei_contig7508:1828..26281683186985.6070077-CDS-P-wetherbeei_contig7508:1828..2628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7508 1829..2628 +
1683186985.6178715-CDS-P-wetherbeei_contig7508:2743..29481683186985.6178715-CDS-P-wetherbeei_contig7508:2743..2948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7508 2744..2948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7508.1.1prot_P-wetherbeei_contig7508.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7508 694..2948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7508.1.1

>prot_P-wetherbeei_contig7508.1.1 ID=prot_P-wetherbeei_contig7508.1.1|Name=mRNA_P-wetherbeei_contig7508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=537bp
MVLISERQQLRMCLEITPLYPTTDDTLVEGAVVVAVADNRPKDDKHDVQE
KPKPVRKKTKGKAVRAEGTGRGIKLKGCRNAFLYYMSHRRKELAAAIRAG
SQDAAVLDLNCTHQQFSSKTAVAWRLLPAAVRRPFEAMAEADKVRYQQER
VMAALTGRQEVISAFQGCDGGGREIADGAAMPFGAWMGSHDEYCYVCFAG
GKLLCCDFCSVAVHGKCLLPPRPRAPAGRWLCPQCVVDAGAEAPPNVWAA
DAAVHVAAVADPAGAADAGAAAAGRVVASGAAAVAVAAALNPAAAATHAA
VGTRAAGALVAAPSADAGATGPAKSLMSAVRQSEAAAQRKACAATATPQA
TTAVPAPKLSRAPPPGAVSRTLLSRVSPPPATTALKAAPRAAPKATTVAT
AAAAANAKATTAAAPWREFELEAGSSRLKRDQDGVVENVVAARGEEPTAT
IGRPESKAAPPIPPGDKGRSAGIGNAQCREKPAGTAGLSAGGDRPAAQDG
VAFPAAVGGASTPKRKAEVNDPRDGGSNLNAGRRQRV
back to top

mRNA from alignment at P-wetherbeei_contig7508:669..2948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7508.1.1 ID=mRNA_P-wetherbeei_contig7508.1.1|Name=mRNA_P-wetherbeei_contig7508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2280bp|location=Sequence derived from alignment at P-wetherbeei_contig7508:669..2948+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGATCGGTTTCCCTTTTGGAGCCATGGTGCTCATTAGTGAACGCCAAC
AGCTGAGAATGTGCTTAGAAATCACACCGCTTTATCCCACGACAGACGAT
ACGCTAGTGGAAGGAGCTGTCGTTGTCGCTGTCGCCGACAACAGGCCGAA
GGATGACAAACACGACGTCCAGGAGAAGCCGAAGCCTGTTCGTAAGAAGA
CTAAGGGGAAGGTCGGTCAAGAAAGGATTCCTTTTCTCAAGTTCTTCGAA
ATTACTCGCAGTATCTACAACATGTCCTGAATGACTTCCCAAAACTTAGT
TTTGCCCAAGGCTTTTGGATCTTTATCTTTTCTTTCTTTCCAGGACTGGG
CAAATGTCGTTGTCATCCGCTAACATCTCATATTTGAACCGTCCTTTCCT
CTTCCCCGCCTCCCTATCTCTCTTTCGCTGTACCGCAGGCGGTGAGAGCA
GAAGGGACGGGAAGAGGCATCAAGCTCAAGGGATGCAGGAACGCCTTCCT
CTACTACATGTCGCACCGCCGAAAGGAGCTCGCAGCAGCCATCCGGGCCG
GGTCGCAGGACGCCGCCGTCCTGGACCTCAATTGCACCCACCAGCAGTTC
AGCTCCAAGACGGCTGTCGCGTGGCGCCTCCTGCCCGCGGCGGTGCGGCG
GCCCTTCGAGGCGATGGCGGAGGCCGACAAGGTGCGCTACCAGCAGGAGC
GTGTCATGGCGGCACTGACGGGCCGCCAGGAGGTCATTTCGGCCTTCCAG
GGCTGCGACGGCGGCGGTCGCGAGATTGCCGATGGCGCGGCGATGCCCTT
TGGCGCGTGGATGGGCTCTCATGACGAATACTGCTACGTCTGCTTCGCCG
GCGGCAAGGCGCGCCGTTTTGGTGTGGTTGGATGGGCGGTTAAATGGATT
GAGAGATGGAAAAGCAAAAAGGGTGATGGTCTACCCGTGTGTCTCTTGAA
TTGTATGTAAGACTCTGGAAACTGAGCTTGCACGAATTTGCATGCGCTTG
ATTACAGCCGTTGAGGTGTTTGAGCACTTGGGTGGCGCAATGGGCGGCGA
AAAGAGCGTTGGGTGCAGTGAACGCCAATTCTAGCGTTTTGCTCCGTCAC
CTTGCTCTTTTGGTTAACAATGTTCCCTTTTTCCCGTTGTAAAATGATCC
TCTGCTGCAGCTGCTTTGCTGCGACTTTTGTAGTGTAGCCGTCCATGGCA
AATGCCTTTTACCGCCACGTCCACGAGCTCCGGCTGGTCGGTGGCTCTGC
CCTCAGTGCGTCGTCGATGCCGGAGCCGAGGCGCCTCCAAATGTTTGGGC
CGCCGATGCCGCGGTGCACGTCGCTGCTGTGGCGGACCCTGCTGGCGCCG
CCGATGCTGGCGCCGCCGCCGCTGGTAGAGTTGTGGCCTCTGGAGCTGCC
GCTGTCGCGGTGGCCGCTGCTCTCAATCCTGCCGCCGCGGCTACCCATGC
AGCTGTCGGCACCAGAGCCGCCGGCGCTTTAGTTGCTGCGCCATCAGCAG
ATGCCGGCGCGACGGGACCAGCAAAGTCGCTTATGAGCGCCGTTCGGCAA
TCGGAGGCGGCTGCGCAAAGGAAAGCCTGTGCAGCGACAGCCACGCCGCA
GGCCACGACGGCTGTTCCTGCGCCGAAGCTGTCGCGAGCGCCACCGCCGG
GAGCGGTCTCACGAACGCTGCTGTCAAGAGTGTCGCCGCCTCCAGCAACA
ACGGCGTTAAAAGCTGCGCCGAGAGCGGCGCCGAAAGCGACGACGGTGGC
GACGGCAGCGGCAGCAGCAAACGCGAAGGCTACGACGGCTGCAGCACCGT
GGAGGGAGTTCGAACTAGAGGCAGGGTCTTCCAGACTGAAGAGGGATCAG
GACGGAGTCGTCGAGAACGTTGTCGCTGCAAGGGGGGAGGAGCCGACTGC
GACCATCGGGAGGCCAGAAAGTAAAGCAGCGCCGCCTATTCCGCCGGGAG
ACAAGGGTCGGTGAGTCTCGGACATAATTTTTCCCCATTACTGTTTTCTT
CCTCTTTCTTCCATTCACCCGTCCTGAAAGAACCACCAACTTTCCCCTTG
TTTGGGATTGCTGCGCCTCCACCAGATCTGCTGGGATTGGCAACGCTCAG
TGCCGGGAGAAGCCGGCCGGGACTGCCGGATTGTCGGCTGGCGGCGACCG
ACCGGCTGCACAAGACGGCGTTGCTTTTCCTGCAGCGGTTGGCGGCGCCA
GCACTCCAAAGCGCAAAGCTGAAGTTAATGACCCGAGAGATGGCGGCAGC
AATCTGAACGCTGGAAGACGCCAGCGAGTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7508:669..2948+

>mRNA_P-wetherbeei_contig7508.1.1 ID=mRNA_P-wetherbeei_contig7508.1.1|Name=mRNA_P-wetherbeei_contig7508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1611bp|location=Sequence derived from alignment at P-wetherbeei_contig7508:669..2948+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTCATTAGTGAACGCCAACAGCTGAGAATGTGCTTAGAAATCAC
ACCGCTTTATCCCACGACAGACGATACGCTAGTGGAAGGAGCTGTCGTTG
TCGCTGTCGCCGACAACAGGCCGAAGGATGACAAACACGACGTCCAGGAG
AAGCCGAAGCCTGTTCGTAAGAAGACTAAGGGGAAGGCGGTGAGAGCAGA
AGGGACGGGAAGAGGCATCAAGCTCAAGGGATGCAGGAACGCCTTCCTCT
ACTACATGTCGCACCGCCGAAAGGAGCTCGCAGCAGCCATCCGGGCCGGG
TCGCAGGACGCCGCCGTCCTGGACCTCAATTGCACCCACCAGCAGTTCAG
CTCCAAGACGGCTGTCGCGTGGCGCCTCCTGCCCGCGGCGGTGCGGCGGC
CCTTCGAGGCGATGGCGGAGGCCGACAAGGTGCGCTACCAGCAGGAGCGT
GTCATGGCGGCACTGACGGGCCGCCAGGAGGTCATTTCGGCCTTCCAGGG
CTGCGACGGCGGCGGTCGCGAGATTGCCGATGGCGCGGCGATGCCCTTTG
GCGCGTGGATGGGCTCTCATGACGAATACTGCTACGTCTGCTTCGCCGGC
GGCAAGCTGCTTTGCTGCGACTTTTGTAGTGTAGCCGTCCATGGCAAATG
CCTTTTACCGCCACGTCCACGAGCTCCGGCTGGTCGGTGGCTCTGCCCTC
AGTGCGTCGTCGATGCCGGAGCCGAGGCGCCTCCAAATGTTTGGGCCGCC
GATGCCGCGGTGCACGTCGCTGCTGTGGCGGACCCTGCTGGCGCCGCCGA
TGCTGGCGCCGCCGCCGCTGGTAGAGTTGTGGCCTCTGGAGCTGCCGCTG
TCGCGGTGGCCGCTGCTCTCAATCCTGCCGCCGCGGCTACCCATGCAGCT
GTCGGCACCAGAGCCGCCGGCGCTTTAGTTGCTGCGCCATCAGCAGATGC
CGGCGCGACGGGACCAGCAAAGTCGCTTATGAGCGCCGTTCGGCAATCGG
AGGCGGCTGCGCAAAGGAAAGCCTGTGCAGCGACAGCCACGCCGCAGGCC
ACGACGGCTGTTCCTGCGCCGAAGCTGTCGCGAGCGCCACCGCCGGGAGC
GGTCTCACGAACGCTGCTGTCAAGAGTGTCGCCGCCTCCAGCAACAACGG
CGTTAAAAGCTGCGCCGAGAGCGGCGCCGAAAGCGACGACGGTGGCGACG
GCAGCGGCAGCAGCAAACGCGAAGGCTACGACGGCTGCAGCACCGTGGAG
GGAGTTCGAACTAGAGGCAGGGTCTTCCAGACTGAAGAGGGATCAGGACG
GAGTCGTCGAGAACGTTGTCGCTGCAAGGGGGGAGGAGCCGACTGCGACC
ATCGGGAGGCCAGAAAGTAAAGCAGCGCCGCCTATTCCGCCGGGAGACAA
GGGTCGATCTGCTGGGATTGGCAACGCTCAGTGCCGGGAGAAGCCGGCCG
GGACTGCCGGATTGTCGGCTGGCGGCGACCGACCGGCTGCACAAGACGGC
GTTGCTTTTCCTGCAGCGGTTGGCGGCGCCAGCACTCCAAAGCGCAAAGC
TGAAGTTAATGACCCGAGAGATGGCGGCAGCAATCTGAACGCTGGAAGAC
GCCAGCGAGTT
back to top