mRNA_P-wetherbeei_contig7404.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: H6SIE2_PARPM (Uncharacterized protein (Fragment) n=3 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE2_PARPM) HSP 1 Score: 141 bits (355), Expect = 3.330e-41 Identity = 72/114 (63.16%), Postives = 80/114 (70.18%), Query Frame = 2
Query: 17 PSGTGQASGPIRHLRISQSPVFLLNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV*CRGYFLELIDCLLNPITSDSFLNSSPPAGPRILT 358
PSGTGQAS PIR L SQ PVFL+NSRHPL CAP WLP A FSRSY G LPSSF+ +LSSALVYST PPVSV GTV GYFL + C +NPI D+ +SP +LT
Sbjct: 1 PSGTGQASDPIRRLATSQGPVFLVNSRHPLVCAPSPWLPKTRAPFSRSYGGILPSSFNTILSSALVYSTSPPVSVWGTVHTWGYFLAFVSCPVNPIRPDNVQKASPSTSSGLLT 114
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A2L2YHR9_PARTP (Rhodospirillum photometricum DSM 122 draft genome sequence (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YHR9_PARTP) HSP 1 Score: 95.5 bits (236), Expect = 1.030e-23 Identity = 50/65 (76.92%), Postives = 51/65 (78.46%), Query Frame = 2
Query: 26 TGQASGPIRHLRISQSPVFLLNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYS 220
TGQAS PIRHL ISQSPVFLLNS HPL CAP L M A SRSY G LPSSF+IVLSSALVYS
Sbjct: 1 TGQASDPIRHLAISQSPVFLLNSCHPLVCAPPAHLRMQRAPLSRSYGGKLPSSFNIVLSSALVYS 65
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: Q3BKI0_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI0_9PROT) HSP 1 Score: 77.0 bits (188), Expect = 1.750e-15 Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 2
Query: 77 VFLLNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV*CRGYFLEL 280
+FL+NSRHPL CA +L SRSY NLPSSF+ +LSSALVYST PPVSVSGTV Y LEL
Sbjct: 1 MFLVNSRHPLVCATYHYLRNGRYPLSRSYGVNLPSSFNTILSSALVYSTSPPVSVSGTV----YTLEL 64
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A5N6L683_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6L683_9ROSI) HSP 1 Score: 74.7 bits (182), Expect = 2.800e-14 Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 2
Query: 86 LNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV*CRGYF 271
L+SR+PLACAP L + A F R Y GNLPSSF +LSSALVYST PPVSVSGTV G F
Sbjct: 94 LSSRYPLACAPCHGLRLGRASFFRRYGGNLPSSFRTLLSSALVYSTRPPVSVSGTVYTVGLF 155
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A0V0GEY3_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GEY3_SOLCH) HSP 1 Score: 68.6 bits (166), Expect = 7.410e-13 Identity = 44/81 (54.32%), Postives = 47/81 (58.02%), Query Frame = -3
Query: 3 PKPTQVDR*SIPRRLRERC*RNSANYPRNFGRRGPRPWATIGGGHRLGGGDCLTKTQGSAKS*DDV*GLTPARCRKVKRRG 245
PKPTQV IPR R RNSA PRNFGRRG G G GDCL K SA S ++V GLTPA+CRKVK G
Sbjct: 1 PKPTQVGWXRIPRGARXLSLRNSAKXPRNFGRRGAH---LRRGSQXRGPGDCLPKPXVSANSKEEVXGLTPAQCRKVKEVG 78
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A2A3MP34_9SPHN (Uncharacterized protein n=1 Tax=Sphingobium sp. D43FB TaxID=2017595 RepID=A0A2A3MP34_9SPHN) HSP 1 Score: 65.1 bits (157), Expect = 1.150e-11 Identity = 29/38 (76.32%), Postives = 29/38 (76.32%), Query Frame = 3
Query: 141 GPSSPEVTRVICRVPSASFSQAPWYTLPVHLCRFRVRS 254
GP S E T ICRVPS FSQ PWYTLP HLCRFRVRS
Sbjct: 2 GPPSSEGTEAICRVPSGYFSQTPWYTLPFHLCRFRVRS 39
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A446ANV5_9PSED (Transposase n=81 Tax=Pseudomonas TaxID=286 RepID=A0A446ANV5_9PSED) HSP 1 Score: 58.9 bits (141), Expect = 2.830e-9 Identity = 27/38 (71.05%), Postives = 28/38 (73.68%), Query Frame = 3
Query: 138 TGPSSPEVTRVICRVPSASFSQAPWYTLPVHLCRFRVR 251
TG SPEVT C VPS FSQAPWY+LP HLCRF VR
Sbjct: 30 TGAPSPEVTVPFCLVPSPEFSQAPWYSLPNHLCRFGVR 67
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: C2ERT0_9LACO (Uncharacterized protein n=1 Tax=Limosilactobacillus vaginalis DSM 5837 = ATCC 49540 TaxID=1423814 RepID=C2ERT0_9LACO) HSP 1 Score: 58.5 bits (140), Expect = 3.220e-9 Identity = 26/36 (72.22%), Postives = 27/36 (75.00%), Query Frame = 3
Query: 150 SPEVTRVICRVPSASFSQAPWYTLPVHLCRFRVRSD 257
SPEVT C VPS FSQAPWY+LP HLCRF VR D
Sbjct: 25 SPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFGVRFD 60
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A0W0XZ17_9GAMM (Uncharacterized protein n=1 Tax=Legionella quinlivanii TaxID=45073 RepID=A0A0W0XZ17_9GAMM) HSP 1 Score: 60.5 bits (145), Expect = 3.670e-9 Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 2
Query: 128 LPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV 253
L + G FSRSY LPSSF+ VLSSALV+STCPPVSVSGTV
Sbjct: 7 LHIQGRTFSRSYGTILPSSFTRVLSSALVFSTCPPVSVSGTV 48
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A132GTM3_9BACT (Uncharacterized protein n=1 Tax=bacterium P201 TaxID=1768112 RepID=A0A132GTM3_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 5.340e-9 Identity = 40/71 (56.34%), Postives = 42/71 (59.15%), Query Frame = 2
Query: 38 SGPIRHLRISQSPVFLLNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGT 250
SG I HL ISQS VFLLNSR APR G FSRSY LPSS + SS +S PPVSVSGT
Sbjct: 2 SGLILHLAISQSHVFLLNSRLGHFSAPR----SRGGPFSRSYRAILPSSLATDHSSTFGFSPRPPVSVSGT 68 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7404.1.1 >prot_P-wetherbeei_contig7404.1.1 ID=prot_P-wetherbeei_contig7404.1.1|Name=mRNA_P-wetherbeei_contig7404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp MDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV*back to top mRNA from alignment at P-wetherbeei_contig7404:322..679+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7404.1.1 ID=mRNA_P-wetherbeei_contig7404.1.1|Name=mRNA_P-wetherbeei_contig7404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=358bp|location=Sequence derived from alignment at P-wetherbeei_contig7404:322..679+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7404:322..679+ >mRNA_P-wetherbeei_contig7404.1.1 ID=mRNA_P-wetherbeei_contig7404.1.1|Name=mRNA_P-wetherbeei_contig7404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig7404:322..679+ (Phaeothamnion wetherbeei SAG_119_79)back to top |