mRNA_P-wetherbeei_contig7404.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7404.1.1
Unique NamemRNA_P-wetherbeei_contig7404.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: H6SIE2_PARPM (Uncharacterized protein (Fragment) n=3 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE2_PARPM)

HSP 1 Score: 141 bits (355), Expect = 3.330e-41
Identity = 72/114 (63.16%), Postives = 80/114 (70.18%), Query Frame = 2
Query:   17 PSGTGQASGPIRHLRISQSPVFLLNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV*CRGYFLELIDCLLNPITSDSFLNSSPPAGPRILT 358
            PSGTGQAS PIR L  SQ PVFL+NSRHPL CAP  WLP   A FSRSY G LPSSF+ +LSSALVYST PPVSV GTV   GYFL  + C +NPI  D+   +SP     +LT
Sbjct:    1 PSGTGQASDPIRRLATSQGPVFLVNSRHPLVCAPSPWLPKTRAPFSRSYGGILPSSFNTILSSALVYSTSPPVSVWGTVHTWGYFLAFVSCPVNPIRPDNVQKASPSTSSGLLT 114          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A2L2YHR9_PARTP (Rhodospirillum photometricum DSM 122 draft genome sequence (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YHR9_PARTP)

HSP 1 Score: 95.5 bits (236), Expect = 1.030e-23
Identity = 50/65 (76.92%), Postives = 51/65 (78.46%), Query Frame = 2
Query:   26 TGQASGPIRHLRISQSPVFLLNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYS 220
            TGQAS PIRHL ISQSPVFLLNS HPL CAP   L M  A  SRSY G LPSSF+IVLSSALVYS
Sbjct:    1 TGQASDPIRHLAISQSPVFLLNSCHPLVCAPPAHLRMQRAPLSRSYGGKLPSSFNIVLSSALVYS 65          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: Q3BKI0_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI0_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 1.750e-15
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 2
Query:   77 VFLLNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV*CRGYFLEL 280
            +FL+NSRHPL CA   +L       SRSY  NLPSSF+ +LSSALVYST PPVSVSGTV    Y LEL
Sbjct:    1 MFLVNSRHPLVCATYHYLRNGRYPLSRSYGVNLPSSFNTILSSALVYSTSPPVSVSGTV----YTLEL 64          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A5N6L683_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6L683_9ROSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.800e-14
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 2
Query:   86 LNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV*CRGYF 271
            L+SR+PLACAP   L +  A F R Y GNLPSSF  +LSSALVYST PPVSVSGTV   G F
Sbjct:   94 LSSRYPLACAPCHGLRLGRASFFRRYGGNLPSSFRTLLSSALVYSTRPPVSVSGTVYTVGLF 155          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A0V0GEY3_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GEY3_SOLCH)

HSP 1 Score: 68.6 bits (166), Expect = 7.410e-13
Identity = 44/81 (54.32%), Postives = 47/81 (58.02%), Query Frame = -3
Query:    3 PKPTQVDR*SIPRRLRERC*RNSANYPRNFGRRGPRPWATIGGGHRLGGGDCLTKTQGSAKS*DDV*GLTPARCRKVKRRG 245
            PKPTQV    IPR  R    RNSA  PRNFGRRG        G    G GDCL K   SA S ++V GLTPA+CRKVK  G
Sbjct:    1 PKPTQVGWXRIPRGARXLSLRNSAKXPRNFGRRGAH---LRRGSQXRGPGDCLPKPXVSANSKEEVXGLTPAQCRKVKEVG 78          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A2A3MP34_9SPHN (Uncharacterized protein n=1 Tax=Sphingobium sp. D43FB TaxID=2017595 RepID=A0A2A3MP34_9SPHN)

HSP 1 Score: 65.1 bits (157), Expect = 1.150e-11
Identity = 29/38 (76.32%), Postives = 29/38 (76.32%), Query Frame = 3
Query:  141 GPSSPEVTRVICRVPSASFSQAPWYTLPVHLCRFRVRS 254
            GP S E T  ICRVPS  FSQ PWYTLP HLCRFRVRS
Sbjct:    2 GPPSSEGTEAICRVPSGYFSQTPWYTLPFHLCRFRVRS 39          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A446ANV5_9PSED (Transposase n=81 Tax=Pseudomonas TaxID=286 RepID=A0A446ANV5_9PSED)

HSP 1 Score: 58.9 bits (141), Expect = 2.830e-9
Identity = 27/38 (71.05%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  138 TGPSSPEVTRVICRVPSASFSQAPWYTLPVHLCRFRVR 251
            TG  SPEVT   C VPS  FSQAPWY+LP HLCRF VR
Sbjct:   30 TGAPSPEVTVPFCLVPSPEFSQAPWYSLPNHLCRFGVR 67          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: C2ERT0_9LACO (Uncharacterized protein n=1 Tax=Limosilactobacillus vaginalis DSM 5837 = ATCC 49540 TaxID=1423814 RepID=C2ERT0_9LACO)

HSP 1 Score: 58.5 bits (140), Expect = 3.220e-9
Identity = 26/36 (72.22%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  150 SPEVTRVICRVPSASFSQAPWYTLPVHLCRFRVRSD 257
            SPEVT   C VPS  FSQAPWY+LP HLCRF VR D
Sbjct:   25 SPEVTAPFCLVPSPEFSQAPWYSLPDHLCRFGVRFD 60          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A0W0XZ17_9GAMM (Uncharacterized protein n=1 Tax=Legionella quinlivanii TaxID=45073 RepID=A0A0W0XZ17_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 3.670e-9
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 2
Query:  128 LPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV 253
            L + G  FSRSY   LPSSF+ VLSSALV+STCPPVSVSGTV
Sbjct:    7 LHIQGRTFSRSYGTILPSSFTRVLSSALVFSTCPPVSVSGTV 48          
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Match: A0A132GTM3_9BACT (Uncharacterized protein n=1 Tax=bacterium P201 TaxID=1768112 RepID=A0A132GTM3_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 5.340e-9
Identity = 40/71 (56.34%), Postives = 42/71 (59.15%), Query Frame = 2
Query:   38 SGPIRHLRISQSPVFLLNSRHPLACAPRLWLPMDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGT 250
            SG I HL ISQS VFLLNSR     APR      G  FSRSY   LPSS +   SS   +S  PPVSVSGT
Sbjct:    2 SGLILHLAISQSHVFLLNSRLGHFSAPR----SRGGPFSRSYRAILPSSLATDHSSTFGFSPRPPVSVSGT 68          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7404.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H6SIE2_PARPM3.330e-4163.16Uncharacterized protein (Fragment) n=3 Tax=Pararho... [more]
A0A2L2YHR9_PARTP1.030e-2376.92Rhodospirillum photometricum DSM 122 draft genome ... [more]
Q3BKI0_9PROT1.750e-1563.24Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
A0A5N6L683_9ROSI2.800e-1466.13Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
A0A0V0GEY3_SOLCH7.410e-1354.32Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A2A3MP34_9SPHN1.150e-1176.32Uncharacterized protein n=1 Tax=Sphingobium sp. D4... [more]
A0A446ANV5_9PSED2.830e-971.05Transposase n=81 Tax=Pseudomonas TaxID=286 RepID=A... [more]
C2ERT0_9LACO3.220e-972.22Uncharacterized protein n=1 Tax=Limosilactobacillu... [more]
A0A0W0XZ17_9GAMM3.670e-973.81Uncharacterized protein n=1 Tax=Legionella quinliv... [more]
A0A132GTM3_9BACT5.340e-956.34Uncharacterized protein n=1 Tax=bacterium P201 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7404contigP-wetherbeei_contig7404:322..679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3880.AES58606
Model size358
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.96e-07
EggNOG OGs2CYJ8@1|root,2S4RZ@2759|Eukaryota,37W3F@33090|Viridiplantae,3GKHF@35493|Streptophyta
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.2408063-UTR-P-wetherbeei_contig7404:321..4541683186979.2408063-UTR-P-wetherbeei_contig7404:321..454Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7404 322..454 +
1683186979.2661283-UTR-P-wetherbeei_contig7404:577..6791683186979.2661283-UTR-P-wetherbeei_contig7404:577..679Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7404 578..679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.251954-CDS-P-wetherbeei_contig7404:454..5771683186979.251954-CDS-P-wetherbeei_contig7404:454..577Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7404 455..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7404.1.1prot_P-wetherbeei_contig7404.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7404 455..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7404.1.1

>prot_P-wetherbeei_contig7404.1.1 ID=prot_P-wetherbeei_contig7404.1.1|Name=mRNA_P-wetherbeei_contig7404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MDGALFSRSYEGNLPSSFSIVLSSALVYSTCPPVSVSGTV*
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mRNA from alignment at P-wetherbeei_contig7404:322..679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7404.1.1 ID=mRNA_P-wetherbeei_contig7404.1.1|Name=mRNA_P-wetherbeei_contig7404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=358bp|location=Sequence derived from alignment at P-wetherbeei_contig7404:322..679+ (Phaeothamnion wetherbeei SAG_119_79)
GCACCCCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATAC GTCATCTTAGGATTTCGCAGAGCCCTGTGTTTTTGTTAAACAGTCGCCAC CCCCTAGCCTGTGCCCCCCGCCTATGGTTGCCCATGGACGGGGCCCTCTT CTCCCGAAGTTACGAGGGTAATTTGCCGAGTTCCTTCAGCATCGTTCTCT CAAGCGCCTTGGTATACTCTACCTGTCCACCTGTGTCGGTTTCGGGTACG GTCTGATGCAGGGGCTATTTCCTGGAACTCATTGACTGCCTTCTGAATCC GATAACTTCAGACAGCTTCTTGAATTCGTCACCACCTGCTGGCCCACGAA TATTAACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7404:322..679+

>mRNA_P-wetherbeei_contig7404.1.1 ID=mRNA_P-wetherbeei_contig7404.1.1|Name=mRNA_P-wetherbeei_contig7404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig7404:322..679+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGGGCCCTCTTCTCCCGAAGTTACGAGGGTAATTTGCCGAGTTC
CTTCAGCATCGTTCTCTCAAGCGCCTTGGTATACTCTACCTGTCCACCTG
TGTCGGTTTCGGGTACGGTCTGA
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