mRNA_P-wetherbeei_contig7021.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7021.3.1
Unique NamemRNA_P-wetherbeei_contig7021.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A835YZJ0_9STRA (Copper chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.120e-25
Identity = 49/70 (70.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   37 EKVTFKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVEL 246
            E V FKVGMTCEGC NACKRILG++ GVS V  DV  K V V+SDG T PQ ML+AL  WSAASGK VEL
Sbjct:    4 ETVVFKVGMTCEGCANACKRILGKMSGVSAVNTDVAAKTVTVSSDGTTSPQAMLDALKVWSAASGKPVEL 73          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A6H5L5L5_9PHAE (HMA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5L5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.440e-22
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   34 AEKVTFKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVEL 246
            +E   F VGMTC+GC NA KRIL +++GVS V  DV  K V V+SDG T  Q ML+AL+KWSAASGK+VEL
Sbjct:    2 SETTVFNVGMTCDGCANATKRILSKMEGVSAVEADVSAKTVTVSSDGSTTKQAMLDALLKWSAASGKSVEL 72          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A024GKA2_9STRA (HMA domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKA2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.790e-20
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 HRFSPLLPFAQAEKVTFKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVELVQ 252
            H F+     A+ + V FKVGMTCEGC +AC RIL ++ GVSEV  D++ K++ V  +G   P  MLEAL KWSA SGK+VEL++
Sbjct:   22 HHFTFYDQMAEGKAVKFKVGMTCEGCSSACTRILTKIQGVSEVKCDMEEKIIEV--NGTADPNEMLEALKKWSAVSGKSVELLE 103          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A1E7FHB0_9STRA (Copper chaperone-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHB0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.280e-19
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   40 KVTFKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVEL 246
            + TF VGMTCEGC NA KRI  +++GVS    D++TK VVVT+D    P+ MLE L KWS+ASGK+V L
Sbjct:    3 ETTFDVGMTCEGCANAVKRIFKKMEGVSSCETDLETKKVVVTADDSVTPEAMLEKLQKWSSASGKSVAL 71          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A1V9YG83_9STRA (HMA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG83_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.280e-19
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   34 AEKVT-FKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVEL 246
            A+ VT F VGMTC GC +AC+RIL ++DGV  V  D+D K VVVT  G   PQ ML AL+KWSAASGK+VEL
Sbjct:    2 ADVVTVFNVGMTCGGCSSACERILLKIDGVKSVACDIDAKTVVVT--GTADPQVMLAALLKWSAASGKSVEL 71          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A448ZPP4_9STRA (HMA domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPP4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.860e-19
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   49 FKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVEL 246
            F +GMTC+GC NA KRIL ++DGV+++  DV+ K  VVT D   PP  MLE L+KWS+ASGK+V L
Sbjct:    6 FDIGMTCDGCANAVKRILMKMDGVTDIVTDVEAKSAVVTHDESVPPSLMLEKLLKWSSASGKSVAL 71          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A7S4MV96_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MV96_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.230e-19
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   49 FKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVELVQ 252
            F+VGMTC+GC NA KRILG++DGVS V  +V+ K VVVT+D    P+ MLE L KW  A+GK+V L Q
Sbjct:   51 FEVGMTCDGCANAVKRILGKIDGVSNVDTNVEAKTVVVTADDSISPEFMLEKLQKWGNAAGKSVALAQ 118          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A1Z5KFX7_FISSO (HMA domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFX7_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 3.070e-18
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   49 FKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVEL 246
            F VGMTCEGC  A KRILG+++GVS++  DV  K+V+V +D    P+ MLE L KW  A+GKTVEL
Sbjct:    6 FNVGMTCEGCAAAVKRILGKIEGVSDIDTDVANKIVIVQADESVTPEMMLEKLEKWGQAAGKTVEL 71          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A024U6W9_9STRA (HMA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6W9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.120e-18
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   34 AEKVT-FKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVELVQ 252
            A+ VT FKVGMTCEGC  AC+RIL ++ GV+ V+ D+  + V+VT  G   P  MLEAL+KWS ASGK+VELVQ
Sbjct:   69 ADVVTEFKVGMTCEGCSGACERILKKIAGVTSVSCDIPGQQVLVT--GTADPAVMLEALLKWSKASGKSVELVQ 140          
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Match: A0A6A3XNT5_9STRA (HMA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XNT5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.130e-18
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 HRFSPLLPFAQAEKVT-FKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTKMVVVTSDGVTPPQTMLEALMKWSAASGKTVEL 246
            H+F P    +   KVT FKVGMTC+GC +AC RIL +++GV+ V  DV+ + ++V  D       MLEAL+KWS ASGK+VEL
Sbjct:   32 HKFDPQTTRSNMVKVTEFKVGMTCDGCSSACTRILNKIEGVTSVKCDVEKQQILVEGDA--DENAMLEALLKWSKASGKSVEL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7021.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZJ0_9STRA1.120e-2570.00Copper chaperone n=1 Tax=Tribonema minus TaxID=303... [more]
A0A6H5L5L5_9PHAE2.440e-2261.97HMA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A024GKA2_9STRA1.790e-2052.38HMA domain-containing protein n=1 Tax=Albugo candi... [more]
A0A1E7FHB0_9STRA1.280e-1957.97Copper chaperone-like protein n=1 Tax=Fragilariops... [more]
A0A1V9YG83_9STRA1.280e-1962.50HMA domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A448ZPP4_9STRA1.860e-1957.58HMA domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S4MV96_9STRA6.230e-1958.82Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5KFX7_FISSO3.070e-1857.58HMA domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A024U6W9_9STRA3.120e-1859.46HMA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A6A3XNT5_9STRA3.130e-1850.60HMA domain-containing protein n=3 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7021contigP-wetherbeei_contig7021:2559..3096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008869783.1
PFAMsHMA
Model size255
Max annot lvl2759|Eukaryota
KEGG koko:K07213
KEGG Pathwayko04978,map04978
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.12e-19
EggNOG OGs2CZEZ@1|root,2SA2R@2759|Eukaryota
Ec32 ortholog descriptioncopper chaperone
Ec32 orthologEc-15_003910.1
DescriptionHeavy-metal-associated domain
Cds size255
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.9226582-CDS-P-wetherbeei_contig7021:2558..26001683186952.9226582-CDS-P-wetherbeei_contig7021:2558..2600Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7021 2559..2600 -
1683186952.932722-CDS-P-wetherbeei_contig7021:2883..30961683186952.932722-CDS-P-wetherbeei_contig7021:2883..3096Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7021 2884..3096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7021.3.1prot_P-wetherbeei_contig7021.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7021 2559..3096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7021.3.1

>prot_P-wetherbeei_contig7021.3.1 ID=prot_P-wetherbeei_contig7021.3.1|Name=mRNA_P-wetherbeei_contig7021.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
HRFSPLLPFAQAEKVTFKVGMTCEGCGNACKRILGRLDGVSEVTVDVDTK
MVVVTSDGVTPPQTMLEALMKWSAASGKTVELVQ*
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mRNA from alignment at P-wetherbeei_contig7021:2559..3096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7021.3.1 ID=mRNA_P-wetherbeei_contig7021.3.1|Name=mRNA_P-wetherbeei_contig7021.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=538bp|location=Sequence derived from alignment at P-wetherbeei_contig7021:2559..3096- (Phaeothamnion wetherbeei SAG_119_79)
CATCGTTTTTCTCCCCTTCTTCCTTTCGCACAGGCGGAGAAGGTAACATT TAAGGTCGGCATGACCTGCGAGGGCTGCGGGAACGCATGCAAGCGGATCT TGGGGCGACTGGACGGCGTGTCGGAGGTCACCGTCGACGTCGACACCAAG ATGGTGGTGGTAACGAGCGACGGCGTGACTCCTCCGCAGACCATGCTCGA GGCGCTCATGAAGGTAAAGAAACCGAGATTCGTTCTCCTCGCGCGGTTTG AAGCCCTATTTTTCCCGAATTCGACGACTCAAGATATGTCTTGGGAATGC GAGTGCACTTGGCAGGGAAATCCCATTATCTTTGTGCTCACACGTACGTC TGTAGCGCCGAGAAAGATTCTGCTGGCTCTTTACGCCCAATAGTTCGCAA CCATGTTTCATCAGGGTTCAGTTTTACTTCTCGGCTCTTTTCTGGCTGAC GAATCGCCCTTTGGGTTTTCTCCCTATCGCTGCTGCTGTTTCGCAGTGGT CGGCAGCCAGCGGCAAGACGGTGGAGCTCGTTCAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7021:2559..3096-

>mRNA_P-wetherbeei_contig7021.3.1 ID=mRNA_P-wetherbeei_contig7021.3.1|Name=mRNA_P-wetherbeei_contig7021.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig7021:2559..3096- (Phaeothamnion wetherbeei SAG_119_79)
CATCGTTTTTCTCCCCTTCTTCCTTTCGCACAGGCGGAGAAGGTAACATT
TAAGGTCGGCATGACCTGCGAGGGCTGCGGGAACGCATGCAAGCGGATCT
TGGGGCGACTGGACGGCGTGTCGGAGGTCACCGTCGACGTCGACACCAAG
ATGGTGGTGGTAACGAGCGACGGCGTGACTCCTCCGCAGACCATGCTCGA
GGCGCTCATGAAGTGGTCGGCAGCCAGCGGCAAGACGGTGGAGCTCGTTC
AATGA
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