mRNA_P-wetherbeei_contig6919.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6919.1.1
Unique NamemRNA_P-wetherbeei_contig6919.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6919.1.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.240e-20
Identity = 73/233 (31.33%), Postives = 113/233 (48.50%), Query Frame = 3 
Query:   81 MVPHLAEAKRVITTEMQFLLTQSKTHEVGVVLYGVPDEETDIPLFTREAEDLNE--DGSYNGVREFIQIDRTSIAMMRELEGVR---ANPGVRSDPFSALIVAMDQIYKRTKRKKYDRHVYLLTDARSMAVVAAXXXXXXXXXXXXXXXXXXXXXXXDN---------EVQSDNVRMYASLVRHVGGSVESAQQALRSV-DARPRSKKPLATVVPLRVGTSLRVQCRMFKKTD 734
            M  H+  A+R +   M   + QSK HEVGVVL+G+P+ ET        A  LNE  +  Y GV+E+  +D+ S+A++R++E +    +      D   A++V M  I  RT +KKY RHVYLLTDA +     +                        +          V+  N +M AS+     G+V  AQ  +  + ++  ++  P+ + V L +GT+L + CR FKKTD
Sbjct:    1 MGDHMELARRAVRVLMVQKMLQSKQHEVGVVLFGLPEAET--------ANQLNEAENSDYLGVKEYCLLDKGSVAVLRKVEAMDIPDSGEPAMGDLLDAMVVGMHMIRSRTLKKKYMRHVYLLTDAATPVAEVSQLGDIVGMYTDPTMECRLHFMGFGHGAPAEEGGGTVKEQNEKMLASVAAATRGTVVPAQTVVDLMGESTIKTTNPVLSKVDLSLGTNLTLHCRFFKKTD 225
[Close]
BLAST of mRNA_P-wetherbeei_contig6919.1.1 vs. uniprot
Match: A0A7S2GJ59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJ59_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.280e-11
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 3 
Query:   93 LAEAKRVITTEMQFLLTQSKTHEVGVVLYGVPDEETDIPLFTREAEDLNEDGSYNGVREFIQIDRTSIAMMRELEGVRANPGVRS-DPFSALIVAMDQIYKRTKRKKYDRHVYLLTDA 443
            L EA   +   ++  + QSKT+EVG++L+G   E+TD PL    AED+  DG+Y  V     ++R ++++  +LE     PG+ S D    L+VA+D +++RT +KKY R +YL+T A
Sbjct:   13 LEEALEGVRMMIESKILQSKTNEVGIILFGT--EDTDNPL----AEDMG-DGNYENVTVLAPLERPAVSLTAQLEE-DVKPGIVSADLIDGLVVAVDMMHRRTDKKKYIRSIYLITAA 122
[Close]
BLAST of mRNA_P-wetherbeei_contig6919.1.1 vs. uniprot
Match: F1A270_DICPU (VWFA domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A270_DICPU)

HSP 1 Score: 62.0 bits (149), Expect = 2.100e-7
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 3 
Query:   33 MDGKKGVIFVLDVGDSMVPHLA-----------EAKRVITTEMQFLLTQSKTHEVGVVLYGVPDEETDIPLFTREAEDLNEDGSYNGVREFIQIDRTSIAMMRELEGVRANPGV-RSDPFSALIVAMDQIYKRTKRKKYDRHVYLLTDAR 446
            +  K+ V+ VLDVG  M   L+           +A R +T   Q  L  SK  E+G+VL G           T+  ++  +D  Y  +     I+  SI  ++ LE +   PG  + D   +LIVAMD + KRT+ KKY + ++L+T+A+
Sbjct:    4 ISSKEAVVIVLDVGIGMTSVLSNNNNNETSPIEDALRSVTLLYQQKLIYSKKDELGLVLIG-----------TKGTKNNLQDDGYQHITVASDIEEPSIETLKYLENL--GPGESKGDVIDSLIVAMDMLIKRTENKKYQKRIFLVTNAK 140
[Close]
BLAST of mRNA_P-wetherbeei_contig6919.1.1 vs. uniprot
Match: UPI000644DEE0 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DEE0)

HSP 1 Score: 58.5 bits (140), Expect = 3.020e-6
Identity = 46/147 (31.29%), Postives = 71/147 (48.30%), Query Frame = 3 
Query:   42 KKGVIFVLDVGDSMVPHLAEAKRVITTE------------MQFLLTQSKTHEVGVVLYGVPDEETDIPLFTREAEDLNEDGSYNGVREFIQIDRTSIAMMRELEGVRANPGV-RSDPFSALIVAMDQIYKRTKRKKYDRHVYLLTDA 443
            K+ ++ +LD+G  M  H  EAK   TT              Q  L   K  E+GVVL G    + +          L +DG Y  +    +I+   I  ++ LE +  +PG  R D   ALIVAMD +  +T++KKY + ++L+T+A
Sbjct:    9 KEALVIILDIGLGMHHHTNEAKHASTTTPIEEALKSVTLLFQQKLIYGKKDELGVVLVGTKGTKNN----------LQKDG-YQHITMQSEIEEPKIETLKYLENL--SPGESRGDLIDALIVAMDMLINKTEKKKYQKRIFLVTNA 142
[Close]
BLAST of mRNA_P-wetherbeei_contig6919.1.1 vs. uniprot
Match: XRCC5_DICDI (X-ray repair cross-complementing protein 5 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=XRCC5_DICDI)

HSP 1 Score: 56.6 bits (135), Expect = 1.340e-5
Identity = 34/135 (25.19%), Postives = 68/135 (50.37%), Query Frame = 3 
Query:   42 KKGVIFVLDVGDSMVPHLAEAKRVITTEMQFLLTQSKTHEVGVVLYGVPDEETDIPLFTREAEDLNEDGSYNGVREFIQIDRTSIAMMRELEGVRANPGVRSDPFSALIVAMDQIYKRTKRKKYDRHVYLLTDAR 446
            K+ V+ +LD+G  M    ++     T+ ++  L          ++YG  D+   + + T+  ++  +D  Y  +     I+  SI  ++ LE +      + D   +LIVAMD + ++T+ KKY + ++L+T+AR
Sbjct:    8 KEAVVVILDIGLGMTSKDSDGTTTTTSSIEDALRSVTLLYQQKLIYGKKDQLGLVLIGTKGTKNNLQDDGYQHITVVSDIEEPSIETLKYLENLAPGES-KGDVIDSLIVAMDMLIRKTENKKYQKRIFLVTNAR 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6919.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE1.240e-2031.33Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2GJ59_9STRA3.280e-1138.14Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F1A270_DICPU2.100e-731.33VWFA domain-containing protein n=1 Tax=Dictyosteli... [more]
UPI000644DEE03.020e-631.29hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
XRCC5_DICDI1.340e-525.19X-ray repair cross-complementing protein 5 n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6919contigP-wetherbeei_contig6919:535..1915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FY60
Preferred nameku80
PFAMsKu,Ku_C,Ku_N,Ku_PK_bind
Model size734
Max annot lvl2759|Eukaryota
KEGG koko:K10885
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022413,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097695,GO:0098687,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue5.24e-22
EggNOG OGsKOG2326@1|root,KOG2326@2759|Eukaryota
Descriptiondouble-strand break repair via nonhomologous end joining
Cds size702
COG categoryL
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.7147436-CDS-P-wetherbeei_contig6919:534..8161683186945.7147436-CDS-P-wetherbeei_contig6919:534..816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6919 535..816 -
1683186945.7343013-CDS-P-wetherbeei_contig6919:1337..14121683186945.7343013-CDS-P-wetherbeei_contig6919:1337..1412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6919 1338..1412 -
1683186945.746219-CDS-P-wetherbeei_contig6919:1538..18831683186945.746219-CDS-P-wetherbeei_contig6919:1538..1883Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6919 1539..1883 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.7627127-UTR-P-wetherbeei_contig6919:1883..19151683186945.7627127-UTR-P-wetherbeei_contig6919:1883..1915Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6919 1884..1915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6919.1.1prot_P-wetherbeei_contig6919.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6919 535..1883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6919.1.1

>prot_P-wetherbeei_contig6919.1.1 ID=prot_P-wetherbeei_contig6919.1.1|Name=mRNA_P-wetherbeei_contig6919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp
MDGKKGVIFVLDVGDSMVPHLAEAKRVITTEMQFLLTQSKTHEVGVVLYG
VPDEETDIPLFTREAEDLNEDGSYNGVREFIQIDRTSIAMMRELEGVRAN
PGVRSDPFSALIVAMDQIYKRTKRKKYDRHVYLLTDARSMAVVAAAAADV
DAANAAEAVVAAAAAGGDDNEVQSDNVRMYASLVRHVGGSVESAQQALRS
VDARPRSKKPLATVVPLRVGTSLRVQCRMFKKTD
back to top

mRNA from alignment at P-wetherbeei_contig6919:535..1915-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6919.1.1 ID=mRNA_P-wetherbeei_contig6919.1.1|Name=mRNA_P-wetherbeei_contig6919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1381bp|location=Sequence derived from alignment at P-wetherbeei_contig6919:535..1915- (Phaeothamnion wetherbeei SAG_119_79)
TATCCCGCATAGTTTTGAGAACTCGGGGAAAGATGGACGGGAAGAAGGGC
GTGATATTCGTCCTGGACGTTGGAGACTCCATGGTGCCGCATCTAGCCGA
GGCCAAGCGCGTCATCACCACCGAGATGCAGTTCCTGCTCACACAGTCCA
AGACCCACGAGGTCGGCGTCGTCCTCTACGGCGTCCCGGACGAGGAGACG
GACATTCCCCTCTTCACCAGGGAAGCCGAGGACCTGAACGAGGACGGCTC
CTACAACGGCGTCCGCGAATTCATCCAGATCGACAGGACTTCCATCGCCA
TGATGCGCGAGCTCGAGGGAGTGCGCGCAAACCCTGGCGTGCGGTCCGAT
CCCTTCAGCGCCCTTATCGTCGCCATGGTCAGTCAAAAATCCGATTCTCG
TTTCCTCTTTGTCGCACCTGCTTTCTTATTTCCCTGGAAGTAAGGACGGG
AAGGTGTTGGATGTTTCAACTTTTCTTTCGTATTTCTCGCCCGGCTTGTG
CAGGACCAGATATACAAGCGCACGAAGCGCAAGAAGTACGACCGGCACGT
CTATTTGCTGACCGACGCGCGCTCCATGGTGGAGAAGGATTGCGATGAGA
TCCAAAGCGATCTCGAGAATGTCGTCGGTGAGTCGACGCAATCGATTCAT
CGATTGATCAATTTCGCTGATTTGTTGGCTTGCTGCTGGCAGTGCATAAG
AGGTTTGTTGGAGTTTGGGCTAAAGAATTGGCTCGTTTTGGAGGTGGCTG
CGAGACTTCCCAGGATTCGATCGAAAGCGATGGGTAAGTAACGATTCCAC
GAGCGTGATTGTGCGAGTAAGGCGCGGAAGGTTGGGTAGAGAACCCTCCA
AAATGCCTTCATTCTGTCGAGATAGGCGTGTCTGAACGCTGTCAACCGTC
CCATGACGCGGCCATTCCCGCCGCCGCAGCGGTGTACGCGAAGGAGGATA
CGCCCACGCAGCTGCACGTCGTCTTCCTCGGCCTGCCGACGGAGCCCCAA
GCCGCCGGAACCGCCGGAGCCGCCTCCGGAACTGCCGCTGCGGACGCTGT
CGACGACACCGTCGACGCCGCCGACGTCGACGCCGCCAATGCCGCCGAGG
CCGTCGTAGCCGCGGCCGCCGCCGACGTCGACGCCGCCAACGCCGCCGAG
GCCGTCGTCGCCGCGGCCGCCGCCGGCGGCGATGACAACGAGGTGCAGTC
GGACAACGTGCGTATGTATGCGAGCCTCGTGCGGCACGTCGGCGGCTCGG
TCGAGTCGGCGCAGCAGGCGCTGCGGAGCGTCGACGCGCGGCCGCGGTCT
AAGAAGCCGCTTGCGACGGTCGTCCCGCTGCGGGTGGGCACGTCGCTGCG
GGTGCAGTGCCGCATGTTCAAGAAGACGGAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6919:535..1915-

>mRNA_P-wetherbeei_contig6919.1.1 ID=mRNA_P-wetherbeei_contig6919.1.1|Name=mRNA_P-wetherbeei_contig6919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig6919:535..1915- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGGAAGAAGGGCGTGATATTCGTCCTGGACGTTGGAGACTCCAT
GGTGCCGCATCTAGCCGAGGCCAAGCGCGTCATCACCACCGAGATGCAGT
TCCTGCTCACACAGTCCAAGACCCACGAGGTCGGCGTCGTCCTCTACGGC
GTCCCGGACGAGGAGACGGACATTCCCCTCTTCACCAGGGAAGCCGAGGA
CCTGAACGAGGACGGCTCCTACAACGGCGTCCGCGAATTCATCCAGATCG
ACAGGACTTCCATCGCCATGATGCGCGAGCTCGAGGGAGTGCGCGCAAAC
CCTGGCGTGCGGTCCGATCCCTTCAGCGCCCTTATCGTCGCCATGGACCA
GATATACAAGCGCACGAAGCGCAAGAAGTACGACCGGCACGTCTATTTGC
TGACCGACGCGCGCTCCATGGCCGTCGTAGCCGCGGCCGCCGCCGACGTC
GACGCCGCCAACGCCGCCGAGGCCGTCGTCGCCGCGGCCGCCGCCGGCGG
CGATGACAACGAGGTGCAGTCGGACAACGTGCGTATGTATGCGAGCCTCG
TGCGGCACGTCGGCGGCTCGGTCGAGTCGGCGCAGCAGGCGCTGCGGAGC
GTCGACGCGCGGCCGCGGTCTAAGAAGCCGCTTGCGACGGTCGTCCCGCT
GCGGGTGGGCACGTCGCTGCGGGTGCAGTGCCGCATGTTCAAGAAGACGG
AT
back to top