mRNA_P-wetherbeei_contig6737.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6737.1.1
Unique NamemRNA_P-wetherbeei_contig6737.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A0L0DID0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DID0_THETB)

HSP 1 Score: 102 bits (255), Expect = 1.900e-22
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  190 KHVLPHGDIKPIVEGKLWVVEGSLSYPLPRNMVIYKMPGEGLLLTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAIEKKTGL 507
            KH+  H +I  +  G LW+VEGS +YPLPRNM I  +   GLLL SV+A+N+  M +LEALG P   +VP++ HT D A YK +YPQ  +VC   D + I K+  +
Sbjct:   65 KHLRHHSEILELAAG-LWMVEGSNAYPLPRNMFIVALRSGGLLLYSVVAMNEDAMRELEALGMPEIMVVPSRQHTFDAARYKARYPQLTVVCSPEDADVISKRVSV 169          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: UPI00166C3886 (hypothetical protein n=1 Tax=Dyella caseinilytica TaxID=1849581 RepID=UPI00166C3886)

HSP 1 Score: 95.1 bits (235), Expect = 4.460e-20
Identity = 60/169 (35.50%), Postives = 89/169 (52.66%), Query Frame = 1
Query:  175 DSAFQKHVLPHGDIKPIVEGKLWVVEGSL-SYPLPRNMVIYKMPGEGLLLTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAIEKKTGLRIDANAAMEFAAGSQTSYRAGTISHAVPGFGGWECYTFDLGDGHGVAAHFGDMLVNV 678
            D  +++ V PH D+  + +  LWVV+G   +  LPRNMV+Y+     LLL SV+ALN+Q M KLEALG+P+  ++P+  H   +A YKR+YP+  +VCP      I K   + +D ++   F        R G   +  PG    E       D + VA    D++ NV
Sbjct:   10 DRYWEREVFPHTDLCELTQN-LWVVQGEFPAAKLPRNMVVYRYAKRSLLLHSVVALNEQAMSKLEALGEPSVMVIPHWDHWAHVAAYKRRYPKMDVVCPQASIAGISKH--VHVDYSSEEYFP-------RHGVKYYVPPGINPVEGVLEVSVDENKVAVIMNDLITNV 168          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A2U3LVI1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Sulfopaludibacter sp. SbA4 TaxID=2043165 RepID=A0A2U3LVI1_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.190e-16
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 1
Query:  238 LWVVEGSLSYPLPRNMVIYKMPGEGLLLTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAIE 492
            LW+V G LS+PL RNMV+Y++P   L+L S++AL++  M++LEALGKP+  +VP+ Y  MD   Y ++YPQA  + P  +R  IE
Sbjct:   36 LWIVRGGLSFPLYRNMVVYRLPDGRLVLHSLVALSEAGMKQLEALGKPSIMVVPHGYDGMDAHWYFQRYPQAAFLTPDEERSRIE 120          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A8J6AZ97_9EUKA (Uncharacterized protein n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6AZ97_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 6.400e-13
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  220 PIVEGKLWVVEGSLSY--PLPRNMVIYKMPGEG---LLLTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCP 468
            P + G +W V G +S    +PR M IY++PG     LL+ S IA N++TM K++ALGKP   ++PN++HT+D  V+ +++P   +VCP
Sbjct:   55 PRISG-IWEVVGPVSNHNKMPRRMTIYRLPGTETPELLIHSCIACNEETMAKIQALGKPKILVIPNRFHTLDAGVWIQRFPDMAIVCP 141          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A534TQL0_9DELT (Uncharacterized protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534TQL0_9DELT)

HSP 1 Score: 75.1 bits (183), Expect = 1.600e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  196 VLPHGDIKPIVEGKLWVVEGSLSYP-LPRNMVIYKMPGEGLLLTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAIEKK 498
            VL HG I+ + E  LW VEG L    +PR M I +     LL  + + L ++ M K+E  G P   LVPN  H +D+A +KR+YP+ R++  A  R  +E++
Sbjct:   36 VLRHGPIEKL-EANLWAVEGVLPRGHVPRRMCIARTTDGRLLFLNAMPLREEAMRKIETFGDPACLLVPNSLHRLDIAAFKRRYPELRILTGAGSRHRVEQR 136          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A4Q3U582_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A4Q3U582_9BURK)

HSP 1 Score: 70.9 bits (172), Expect = 4.120e-11
Identity = 36/103 (34.95%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  196 VLPHGDIKPIVEGKLWVVEGSLSYPL---PRNMVIYKMPGEGLLLTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAIEK 495
            V PHG+++ I +G L  V G +  PL   PR M + ++      + S IAL++ +M+++EALG P+  +VPN  H +D  ++K++YP  +++ P    E IE+
Sbjct:   10 VQPHGELQEIDDGIL-TVAGEIHMPLGNFPRRMTVIRLSNGRTAIWSAIALDEPSMQRIEALGAPSIMIVPNPGHRLDSRIWKQRYPDIQVMAPPGGLEQIEE 111          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A0L0HLS5_SPIPD (Stc1 domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HLS5_SPIPD)

HSP 1 Score: 70.9 bits (172), Expect = 1.540e-10
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  202 PHGDIKPIVEGKLWVVEGSL---SYPLPRNMVIYKMPGEGLL-LTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAIEK 495
            PH  ++      LW V G+L   +  LP  M +Y+ PG   L + S I LN +   +LEALGK T  +VPN+ H   +  + + YPQA++ CP  ++E +EK
Sbjct:   54 PHSPLRQHARN-LWTVVGNLPPRNSALPCTMTVYRFPGTKFLWIHSPICLNDEVRAELEALGKVTWIVVPNRMHRTYVEAWHQLYPQAKIACPEKEKEGVEK 154          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A1Q7MAC3_9DELT (Uncharacterized protein n=4 Tax=Bacteria TaxID=2 RepID=A0A1Q7MAC3_9DELT)

HSP 1 Score: 66.6 bits (161), Expect = 1.580e-9
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  196 VLPHGDIKPIVEGKLWVVEGSLSY-PLPRNMVIYKMPGEGLLLTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAI 489
            VLPH  I+ + E  LW VE +L   PL R M I ++    L+  + IAL++ +M+++EA GKP   L  N +H +DL  YK +YP  R++     R+ I
Sbjct:    7 VLPHQPIEKLQEN-LWTVEATLPQGPLRRRMGIARLGDGQLVFLNAIALDEPSMKRIEAWGKPAFALTANGFHRLDLGSYKARYPGLRVLAAPAARKRI 104          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A507EG92_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EG92_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 3.150e-9
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  181 AFQKHVLPHGDIKPIVEGKLWVVEGSL---SYPLPRNMVIYKMPGEGLL-LTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAIEK 495
            ++   + PH  ++      LW V G L   +  LP  M +Y+ PG   L + S I LN +   +LEALGK T  +VPN+ H   +  +   YP A++ CP  ++E +EK
Sbjct:   47 SYSSLINPHSPLRQHARN-LWTVVGRLPPRNSALPCTMTVYRFPGTKFLWIHSPICLNDKVRAELEALGKVTWIVVPNRMHRTYVEAWHHLYPHAKIACPEKEKEDVEK 154          
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Match: A0A519HE40_9CAUL (Uncharacterized protein n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A519HE40_9CAUL)

HSP 1 Score: 65.5 bits (158), Expect = 3.560e-9
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  202 PHGDIKPIVEGKLWVVEGSLSYPL---PRNMVIYKMPGEGLLLTSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPAVDREAI 489
            PHG +  + EG L V  G +  PL   PR M + ++ G    + S +AL +  M  +EA G PT  +VPN  H  D+ ++K++YP  R+V P    EA+
Sbjct:   12 PHGHLHEMDEGLLSVA-GEIVMPLGRFPRRMTVIRLSGGRTAIWSAVALEEPQMRLIEAEGTPTFLIVPNPGHRTDVRIWKKRYPDLRVVTPPGAVEAV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6737.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A0L0DID0_THETB1.900e-2247.17Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
UPI00166C38864.460e-2035.50hypothetical protein n=1 Tax=Dyella caseinilytica ... [more]
A0A2U3LVI1_9BACT1.190e-1648.24Uncharacterized protein n=1 Tax=Candidatus Sulfopa... [more]
A0A8J6AZ97_9EUKA6.400e-1342.05Uncharacterized protein n=1 Tax=Carpediemonas memb... [more]
A0A534TQL0_9DELT1.600e-1238.24Uncharacterized protein n=2 Tax=Deltaproteobacteri... [more]
A0A4Q3U582_9BURK4.120e-1134.95Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A0L0HLS5_SPIPD1.540e-1037.25Stc1 domain-containing protein n=1 Tax=Spizellomyc... [more]
A0A1Q7MAC3_9DELT1.580e-938.38Uncharacterized protein n=4 Tax=Bacteria TaxID=2 R... [more]
A0A507EG92_9FUNG3.150e-933.94Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
A0A519HE40_9CAUL3.560e-936.36Uncharacterized protein n=1 Tax=Brevundimonas sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6737contigP-wetherbeei_contig6737:1013..2526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog529818.AMSG_08252T0
Model size705
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.02e-24
EggNOG OGs2D4X0@1|root,2SWK6@2759|Eukaryota
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.3249114-UTR-P-wetherbeei_contig6737:1012..11831683186933.3249114-UTR-P-wetherbeei_contig6737:1012..1183Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6737 1013..1183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.3341744-CDS-P-wetherbeei_contig6737:1183..12901683186933.3341744-CDS-P-wetherbeei_contig6737:1183..1290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6737 1184..1290 +
1683186933.348707-CDS-P-wetherbeei_contig6737:1378..15351683186933.348707-CDS-P-wetherbeei_contig6737:1378..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6737 1379..1535 +
1683186933.3647091-CDS-P-wetherbeei_contig6737:1997..22051683186933.3647091-CDS-P-wetherbeei_contig6737:1997..2205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6737 1998..2205 +
1683186933.376609-CDS-P-wetherbeei_contig6737:2464..25261683186933.376609-CDS-P-wetherbeei_contig6737:2464..2526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6737 2465..2526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6737.1.1prot_P-wetherbeei_contig6737.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6737 1184..2526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6737.1.1

>prot_P-wetherbeei_contig6737.1.1 ID=prot_P-wetherbeei_contig6737.1.1|Name=mRNA_P-wetherbeei_contig6737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
MDSAFQKHVLPHGDIKPIVEGKLWVVEGSLSYPLPRNMVIYKMPGEGLLL
TSVIALNQQTMEKLEALGKPTTFLVPNKYHTMDLAVYKRQYPQARLVCPA
VDREAIEKKTGLRIDANAAMEFAAGSQTSYRAGTISHAVPGFGGWECYTF
DLGDGHGVAAHFGDMLVNVNKPSSGLKE
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mRNA from alignment at P-wetherbeei_contig6737:1013..2526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6737.1.1 ID=mRNA_P-wetherbeei_contig6737.1.1|Name=mRNA_P-wetherbeei_contig6737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1514bp|location=Sequence derived from alignment at P-wetherbeei_contig6737:1013..2526+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCAGGAACACCTTAGGGAAAGCGCACAGGGCATAGACGTTTGCAAAAG TAGGACGTGACGCGAGGCAGCAAAGAAAGGAGGTGACTCGAGCAAAGAAT CGGAGTTCGAGCATCGAGAGCCTCAACGGCCTCTCCTAACCTCCCCCCAA GCTTTCCTTTCCGCTAGGATAATGGACAGCGCCTTTCAGAAACACGTGTT GCCACATGGCGACATCAAACCGATCGTCGAGGGGAAACTATGGGTGGTGG AAGGAAGTCTGTCATATCCACTGCCCAGGTGCATCGCACTGCGTCTTCCG TCAGCCACGCGTCAACCTCTCGCATTGACCACTTTGCACCACCTTTTCAT CTCCCGCTTGCAACAGAAACATGGTGATTTACAAGATGCCCGGAGAAGGC CTGCTGCTAACGAGCGTCATAGCACTGAACCAGCAGACCATGGAAAAGCT CGAGGCACTCGGCAAGCCCACGACCTTTCTCGTGCCGAATAAGTATCACA CGATGGACTTGGCCGTCTACAAGGTGCGGCGGCGGCAGTACTGCCGTTGT GTGAATGGTTCCGTTTATCTCCATCCCTTTGGAAAATATGACTTTGTAAT TGGGGCTCTGTAATTTGAGGAGCCTTTGCATTTAGCTTCTTCTTTGGTTA GACAAGCGGCGCCGATGCAGCGATTGGTTAGCTTGAATCGAATGCCTCTG TCGCATGTGGCTCTTGTCCAACCTCGCAGTCACACTGCATTCGTTGGTAT CCTGCCCCTGCCAGAGCTCGCCATTTTCGCCACAAATCGCCGCCGTCGTG TCGCCGCCACCGCCGCCTCCTCTGCGTCCCCTGCAACCGCCGCCGCCGCT TCCGCTGCATCCCCTGCGCCTGCGACTGCCACCGCCATCACCTCCACTGT TTCCACTTCTGCCGTCTTCGCTGCTATCGTCCCCGGTGCAAACGCGTCCG TTGCGGCCCCCGCCACCTTTCCCTGATCTTCGCAGCGCCAGTACCCGCAG GCGCGGCTGGTTTGTCCGGCTGTTGACCGCGAGGCGATAGAAAAAAAGAC TGGCCTCAGGATAGATGCCAATGCCGCCATGGAGTTCGCGGCGGGGTCGC AGACCAGCTACCGCGCGGGCACCATCAGCCACGCCGTGCCGGGCTTCGGC GGCTGGGAGTGCTACACCTTCGACCTTGGCGATGGCCACGGCGGTGAGTG GTAGCGGAACAGCCAAGCCCCGCTTATCTGTTACCGCCTTTGTCACAGAC GTCACAGCCTTTTGAGGTTTCCTCTCCGCGACGCGGCTGAATACCGCTCT TTTCGCGCTCTTTCTTCGGATCTGCGAGACGTGGCTTGCTGTCCCTACTT TTAGTGCGACGTTTCCCACATTTATCGCAATGGCTCTGAACTTCAATCCA ATTTTCGACATCCTTACTTGTCCACATCTGGGGCCCATTTTCGCGCACGC AGTCGCCGCCCACTTCGGGGACATGCTCGTCAATGTCAACAAACCGTCAT CCGGCCTCAAAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6737:1013..2526+

>mRNA_P-wetherbeei_contig6737.1.1 ID=mRNA_P-wetherbeei_contig6737.1.1|Name=mRNA_P-wetherbeei_contig6737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig6737:1013..2526+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAGCGCCTTTCAGAAACACGTGTTGCCACATGGCGACATCAAACC
GATCGTCGAGGGGAAACTATGGGTGGTGGAAGGAAGTCTGTCATATCCAC
TGCCCAGAAACATGGTGATTTACAAGATGCCCGGAGAAGGCCTGCTGCTA
ACGAGCGTCATAGCACTGAACCAGCAGACCATGGAAAAGCTCGAGGCACT
CGGCAAGCCCACGACCTTTCTCGTGCCGAATAAGTATCACACGATGGACT
TGGCCGTCTACAAGCGCCAGTACCCGCAGGCGCGGCTGGTTTGTCCGGCT
GTTGACCGCGAGGCGATAGAAAAAAAGACTGGCCTCAGGATAGATGCCAA
TGCCGCCATGGAGTTCGCGGCGGGGTCGCAGACCAGCTACCGCGCGGGCA
CCATCAGCCACGCCGTGCCGGGCTTCGGCGGCTGGGAGTGCTACACCTTC
GACCTTGGCGATGGCCACGGCGTCGCCGCCCACTTCGGGGACATGCTCGT
CAATGTCAACAAACCGTCATCCGGCCTCAAAGAG
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