mRNA_P-wetherbeei_contig6733.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6733.1.1
Unique NamemRNA_P-wetherbeei_contig6733.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: A0A6H5LKB4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.990e-23
Identity = 60/161 (37.27%), Postives = 77/161 (47.83%), Query Frame = 2
Query:  263 VFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHATQPGDMGVVCDWTGVGDFP---DMPTCVQQACHGHGEDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGXXXXXXXXKVTVRLTNGELLALLNPTNDALPYMYDNYDWKWCDAQNITVG 736
            VFWV+HP A+RL   RR++G        FDETWGYTH +  G+ G VC+W  V   P   DMPTC+   C GH EDD+LPF + +                                     V+LTN E + L+ PTN+ LPYMYD + W  C     + G
Sbjct:  534 VFWVVHPTADRLLAWRRMLGRQGVEGWDFDETWGYTHTSVVGETGTVCNWDDV--VPGSGDMPTCITGICGGHNEDDLLPFTVKVKGE---------------------------------NVQLTNAEWMDLIYPTNEDLPYMYDEFKWDHCSEDGYSFG 659          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.470e-21
Identity = 58/153 (37.91%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  263 VFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHATQPGDMGVVCDWTGVGDFP---DMPTCVQQACHGHGEDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGXXXXXXXXKVTVRLTNGELLALLNPTNDALPYMYDNYDWKWC 712
            +FWV+HP A+RL   RR++G        FDETWGY H++  G+ G VC+W  V   P   DMPTCV+  C GH EDD+LPF +             ++ G V                    ++LTN   + L+ PTN+ LPYMYD + W  C
Sbjct:  534 LFWVIHPTADRLLAWRRMLGRQGAEGWDFDETWGYAHSSVVGETGTVCNWDDV--VPGSGDMPTCVKGICGGHNEDDLLPFSV-------------KINGEV--------------------MKLTNAGWMDLIYPTNEDLPYMYDEFKWTHC 651          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: A0A7S2CGQ1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CGQ1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.270e-19
Identity = 53/161 (32.92%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  266 FWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHATQPGDMGVVCDWTGVGDFPD-MPTCVQQACHGHGEDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGXXXXXXXXKVTVRLTNGELLALLNPTNDALPYMYDNYDWKWCDAQNITVGLNA 745
            FWVLH AAERL   RR+   +     P DETWG+ H     D+GVVCDW+ V +  D +PTC  + C GHG  D LPF                         F G G              +N +    + P ND + Y+YDN++W+ C++Q +++ ++ 
Sbjct:  522 FWVLHTAAERLLQYRRMQADV----SPLDETWGFAHMNAASDVGVVCDWSSVENGGDSLPTCTAKLCEGHGATDTLPFS-----------------------DFLGHGETY-----------SNMQFYDFMEPNNDQILYVYDNFEWEHCESQGVSMDVSV 644          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: A0A7S2F940_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F940_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.490e-16
Identity = 51/165 (30.91%), Postives = 69/165 (41.82%), Query Frame = 2
Query:  218 VSFLPHLSYPNE-------K*QVFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHATQPGDMGVVCDWTGVGDFPDMPTCVQQACHGHGEDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGXXXXXXXXKVTVRLTNGELLALLNPTNDALPYMYD 691
            ++ L H+  P E       +   FW LH  AER     R++ A  +  + F++TWGY H     D  VVCDW+GV +F DMP C +  C GH EDD+LPF    P                                       TN E   +++P N  LPY Y+
Sbjct:   24 LAMLCHVGLPGEMFTSAAPQDPTFWPLHGNAERYIQYLRILDA--NNTIEFNQTWGYEHQGAASDTDVVCDWSGVKNFTDMPACSKTECPGHKEDDLLPFKKLFPQQKDTLY--------------------------------TNAEFYDVVSPFNTKLPYAYE 154          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: F0Y494_AURAN (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y494_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 1.850e-15
Identity = 49/157 (31.21%), Postives = 70/157 (44.59%), Query Frame = 2
Query:  263 VFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTH-ATQPGDMGVVCDWTGVGDFPDMPTCVQQACHGHGEDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGXXXXXXXXKVTVRLTNGELLALLNPTNDALPYMYDNYDWKWCDAQNIT 730
            +FW +H  A+RL + +R++     T   F++TWGY H +  P D G VCDW    +  D+P C  + C GH  +D+LP                    G+ E                     TN E    ++P ND LPY+Y+N+DW  CD  N T
Sbjct:  926 IFWPIHTTADRLLSWKRILAHKGKT--LFNQTWGYAHPSATPSDTGKVCDWLAKDEAMDLPECRVETCEGHNAEDLLP--------------------GMPE--------------------YTNAEFYDFMDPYNDDLPYLYENFDWDHCDKLNFT 1040          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: F0Y635_AURAN (Myb-like domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y635_AURAN)

HSP 1 Score: 89.4 bits (220), Expect = 4.210e-15
Identity = 54/157 (34.39%), Postives = 71/157 (45.22%), Query Frame = 2
Query:  263 VFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHATQ-PGDMGVVCDWTGVGDFPDMPTCVQQACHGHGEDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGXXXXXXXXKVTVRLTNGELLALLNPTNDALPYMYDNY-DWKWCDAQNI 727
            +FWVLH  +ER    +R++     T L  DETW Y H+   P D   VCDW+GVGD  ++PTC    C GH EDD+LPF                         F G G              TN +    ++P N  LPY YD++ +W  CDA  +
Sbjct:  834 IFWVLHGLSERFVGFKRILAHEGYTHL--DETWKYHHSMDVPSDTHYVCDWSGVGDSMELPTCTPGTCAGHKEDDLLPFG-----------------------DFLGVGDTY-----------TNRQFWDFISPYNTELPYTYDSFTNWPACDAMGL 954          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: A0A7S2MH92_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MH92_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.400e-14
Identity = 53/160 (33.12%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  263 VFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHAT--QPGDMGVVCDWTGVGDFPDMPTCVQQACHGHGEDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGXXXXXXXXKVTVRLTNGELLALLNPTNDALPYMYDNYDWKWCDAQNITVG 736
            VFW+LHPA+ERL N RR++ A       FDE WGY H++   P D+G V +W     F D+PT     C GH   D+LPF                  G + +  +                  TN +    L+P N+ LPY YD+Y W+ C+A    +G
Sbjct:  558 VFWLLHPASERLLNWRRMLKAWKFA--DFDEAWGYNHSSVNAPSDVGKVFNWENTSGF-DLPTHEMGTCPGHEAMDLLPFK-----------------GLIKDGEY-----------------ATNKDFYEFLHPWNEMLPYTYDSYRWEHCNASGDDIG 680          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.590e-10
Identity = 53/161 (32.92%), Postives = 70/161 (43.48%), Query Frame = 2
Query:  233 HLSYPNEK*QVFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHATQPGDMGVVCDWTGV-GDFPDMPTCVQQACHGHGEDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGXXXXXXXXKVTVRLTNGELLALLNPTNDALPYMYDNYDWKWC 712
            HL   +     FW +HP  ERLF    L G + D   P D  + YT +    D  +V + TG+ GD           CHGHG  DV PFDL      A  +  G  G G                  +   +LTN E+LA+L+   + LPY+YDN+ W  C
Sbjct:  544 HLHAGSSLDPTFWAMHPTMERLFMFSSLTGQLTDFHWP-DSEFSYTDS----DGNIVVETTGIYGD----------TCHGHGGSDVFPFDLLDGDDDAFQIKTGMPGNG------------------ETGNKLTNREVLAVLDARFNMLPYVYDNFRWDHC 671          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: A0A7S2CMM8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMM8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.550e-8
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  263 VFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHATQPGDMGVVCDWTGV-GDFPDMPTCVQQACHGHGEDDVLPF 496
            +FW LH  A++  N +RL+     T L     + + H   P D GVVCDW+GV G+F  MP C ++ C GH E D++PF
Sbjct:  102 LFWPLHGLADKFINMKRLMKDAKKTVLDESWGFTHLHQV-PSDTGVVCDWSGVTGEFQ-MPNCTKKTCPGHKEFDIIPF 178          
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Match: A0A7S2SIM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIM0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.050e-8
Identity = 34/67 (50.75%), Postives = 39/67 (58.21%), Query Frame = 2
Query:  263 VFWVLHPAAERLFNSRRLVGAMPDTPLPFDETWGYTHATQPGDMGVVCDWTGVGDFPDMPTCVQQAC 463
            VFWVLHPAAER+   RRLV  +    L  D TWGY H     D+G+VCDW    +  DMPTC    C
Sbjct:  556 VFWVLHPAAERVMQWRRLVSDLSVRDL--DMTWGYDHRGDASDLGMVCDWD---NDQDMPTCSAGTC 617          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6733.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5LKB4_9PHAE3.990e-2337.27TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7G0J8_ECTSI3.470e-2137.91Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A7S2CGQ1_9STRA3.270e-1932.92Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2F940_9STRA3.490e-1630.91Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0Y494_AURAN1.850e-1531.21Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
F0Y635_AURAN4.210e-1534.39Myb-like domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S2MH92_9STRA1.400e-1433.13Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
D7FW00_ECTSI1.590e-1032.92Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
A0A7S2CMM8_9STRA2.550e-841.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SIM0_9STRA4.050e-850.75Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6733contigP-wetherbeei_contig6733:741..2431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0J7
PFAMsTyrosinase
Model size1435
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.36e-19
EggNOG OGs2D2AI@1|root,2SM4K@2759|Eukaryota
DescriptionCommon central domain of tyrosinase
Cds size450
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.1827664-UTR-P-wetherbeei_contig6733:740..10651683186933.1827664-UTR-P-wetherbeei_contig6733:740..1065Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6733 741..1065 +
1683186933.21331-UTR-P-wetherbeei_contig6733:1771..24311683186933.21331-UTR-P-wetherbeei_contig6733:1771..2431Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6733 1772..2431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.193957-CDS-P-wetherbeei_contig6733:1065..14611683186933.193957-CDS-P-wetherbeei_contig6733:1065..1461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6733 1066..1461 +
1683186933.2046318-CDS-P-wetherbeei_contig6733:1717..17711683186933.2046318-CDS-P-wetherbeei_contig6733:1717..1771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6733 1718..1771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6733.1.1prot_P-wetherbeei_contig6733.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6733 1066..1771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6733.1.1

>prot_P-wetherbeei_contig6733.1.1 ID=prot_P-wetherbeei_contig6733.1.1|Name=mRNA_P-wetherbeei_contig6733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MPDTPLPFDETWGYTHATQPGDMGVVCDWTGVGDFPDMPTCVQQACHGHG
EDDVLPFDLTLPAAAALALSGGRVGGGVSEARFFGSGDGDGDGNGKVTVR
LTNGELLALLNPTNDALPYMYDNYDWKWCDAQNITVGLNAGFLVEDEEE*
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mRNA from alignment at P-wetherbeei_contig6733:741..2431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6733.1.1 ID=mRNA_P-wetherbeei_contig6733.1.1|Name=mRNA_P-wetherbeei_contig6733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1691bp|location=Sequence derived from alignment at P-wetherbeei_contig6733:741..2431+ (Phaeothamnion wetherbeei SAG_119_79)
GCTATTCCGCCTTTCTCTCGGCCTTGCCAGTTACGTGGGCGACATGTACA CGTCGGCGGCGCCCCAGGACCCGGTGAGTGCGGCAACGAACGGGGGAAAG AGAGCGCCGCTCAACACCGGCGCCATTAATGCCACGCCGAACCTTCTGTC ATTCTGGAACGGTTTAATCCTGCGTCATACTGTTCACCACCGGTGCGTCT CTCTCCTGCCGCCGCTTGTTTCCTTTCTGCCCCACCTCTCATATCCAAAC GAAAAATAACAGGTGTTTTGGGTGCTTCACCCGGCGGCGGAGCGCCTGTT CAACTCGCGTCGGCTGGTCGGCGCCATGCCGGACACGCCCCTCCCCTTCG ATGAGACGTGGGGCTACACGCACGCTACGCAGCCGGGAGACATGGGCGTC GTCTGCGACTGGACGGGCGTTGGAGACTTCCCAGATATGCCGACGTGCGT CCAGCAGGCCTGCCACGGGCACGGTGAGGACGACGTGCTGCCGTTTGACC TGACGCTGCCGGCGGCGGCGGCGCTGGCGCTGTCCGGCGGCCGCGTCGGG GGCGGCGTTAGCGAAGCCCGCTTCTTCGGCAGCGGGGATGGCGACGGCGA CGGGAACGGTAAGGTGACGGTGCGGCTGACGAACGGCGAGCTTTTGGCGC TCCTCAACCCCACCAACGATGCGTTGCCGTACATGTACGACAACTACGAC TGGAAGTGGTGTGATGCTCAGGTAAGGCACTGGTTCGGCGGTGCTGCGGT CTCGTCATTGTTGCTGCATCGCACCCGGCACTTGAGGGAAATTCTGACTC GTTGTGAGATGAAGGTGACGATCTGCCGCGCTCAAGCATTCATTTTGCTC ATTCACACGCCAACAAACAAGCGCAGGCGTCAGCCCTGCCACTGGGAGTC GAGCCGAGTCAATGAGGCCACCTCAAAAACCAAATCTAACCAGAGCCCGC TTCCGTCTCAATCTTTGAAACAAACAGAACATCACTGTCGGCTTGAACGC CGGCTTCCTCGTCGAAGACGAAGAGGAGTAGTTGCGTCGGACGAAGGGTG GGGAGCTTCACATTGCAGATGTGGTGTTGCCGTGCTCTCGTACGGCACCG AAGACGGGCCGCCCGGCTTGGGTCTACTGCCGACACGGCTTGAAAGTAGT ATAGGAGGTGAGGCGCGTAGCCAGATCGAGGAGCACGCCTTGCGCTGGTT AAGAACATATATTTAAGCTGCAACAGTCAGGTTTTTGCCTGGTGTTGCAC GCGCAGGGCCAGGGACACCGGAGCAGCCGGCCAGAGTGAGATTGAGAAAA GCGCTGGGCCGTCTACGGGAGGCTTCTAATGCTGCGCCGAAAAGGAGTGG GGGGCTTTCTGATGCTATGGAGCTGCAGTAGCCTCGAGGCAGCGGGGTGA GGGTGAGTGAGGGCCCCGCTTGGTGCCGCTTTGGCTTCAGCCGGCGTGGC ACAAACAAGCCTCAGGTACTTCGTGTAGTATGCGGTAGGGAGAAACTACG GAGGTAAAGGAGGCGGACAGGGGCGGTGTTACAAAGTGACGCGTCATTTA GCATTGTGTGCGAGTGACAAAACAGCCGGGCCATCTTTGGAGTTGCGGGT CCGGCGTCCGTTCCTCGGTGCAGGCATGGAGGACACTTAGGAGAAATTGC CCTTTACTGTATACATATTAATAAATTGCAGTTGCCGGTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6733:741..2431+

>mRNA_P-wetherbeei_contig6733.1.1 ID=mRNA_P-wetherbeei_contig6733.1.1|Name=mRNA_P-wetherbeei_contig6733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig6733:741..2431+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGACACGCCCCTCCCCTTCGATGAGACGTGGGGCTACACGCACGC
TACGCAGCCGGGAGACATGGGCGTCGTCTGCGACTGGACGGGCGTTGGAG
ACTTCCCAGATATGCCGACGTGCGTCCAGCAGGCCTGCCACGGGCACGGT
GAGGACGACGTGCTGCCGTTTGACCTGACGCTGCCGGCGGCGGCGGCGCT
GGCGCTGTCCGGCGGCCGCGTCGGGGGCGGCGTTAGCGAAGCCCGCTTCT
TCGGCAGCGGGGATGGCGACGGCGACGGGAACGGTAAGGTGACGGTGCGG
CTGACGAACGGCGAGCTTTTGGCGCTCCTCAACCCCACCAACGATGCGTT
GCCGTACATGTACGACAACTACGACTGGAAGTGGTGTGATGCTCAGAACA
TCACTGTCGGCTTGAACGCCGGCTTCCTCGTCGAAGACGAAGAGGAGTAG
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