mRNA_P-wetherbeei_contig6498.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6498.1.1
Unique NamemRNA_P-wetherbeei_contig6498.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: UPI001C3F3D0C (RHS repeat protein n=1 Tax=Thauera butanivorans TaxID=86174 RepID=UPI001C3F3D0C)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-8
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   28 LLASAIGLAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNRTRAQTQG 198
            +LA+ +GL+ P  AG   +SYTYD LGRV +A+Y NG  +TYTYD A NR    T G
Sbjct:   19 VLATLLGLSMPVLAGS--VSYTYDQLGRVKTATYSNGVVITYTYDAAGNRVSQVTTG 73          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: A0A350ZYD0_9RHOO (Uncharacterized protein n=1 Tax=Thauera sp. TaxID=1905334 RepID=A0A350ZYD0_9RHOO)

HSP 1 Score: 54.3 bits (129), Expect = 3.450e-8
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   31 LASAIGLAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNRTRAQTQG 198
            +A+ +GLA P  AG   +SYTYD LGR+ +A+Y NG  +TYTYD A NR    T G
Sbjct:    3 VAAMLGLAVPALAGS--VSYTYDTLGRLKTATYSNGVVITYTYDAAGNRLSRVTTG 56          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: UPI000A31F107 (RHS repeat protein n=1 Tax=Methylocaldum sp. RMAD-M TaxID=2806557 RepID=UPI000A31F107)

HSP 1 Score: 53.5 bits (127), Expect = 1.220e-7
Identity = 34/66 (51.52%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    4 RARLGCAALLASAIGLAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNRTRAQTQGA 201
            RA     A  A A  LA P  AG  T  YTYD LGRVI+A+Y NG  +TY+YD A NRT     GA
Sbjct:   17 RANTSIIASAAVAASLAGPAWAGSVT--YTYDTLGRVITATYSNGVVITYSYDAAGNRTSHLVTGA 80          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: UPI001ADB1F6A (YD repeat-containing protein n=1 Tax=Brevundimonas sp. A19_0 TaxID=2821087 RepID=UPI001ADB1F6A)

HSP 1 Score: 53.1 bits (126), Expect = 1.810e-7
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   82 ISYTYDALGRVISASYPNGATVTYTYDNADNRTRAQT 192
            + YTYDALGR+ SA+YP G TVTYTYD A NRT+  T
Sbjct:   32 VIYTYDALGRLTSAAYPTGVTVTYTYDAAGNRTQVVT 68          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: A0A7S6LX42_9PROT (RHS repeat protein n=1 Tax=Nitrosomonas sp. H1_AOB3 TaxID=2741553 RepID=A0A7S6LX42_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 2.180e-7
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   31 LASAIGLAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNRTRAQTQG 198
            +A+ +GL+A   AG   +SYTYDALGR+ +A+Y NG  +TYTYD A NR    T G
Sbjct:   22 VAAILGLSAAVFAGS--VSYTYDALGRIKTATYSNGVIITYTYDAAGNRVSQITTG 75          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: A0A560EIZ7_9PROT (YD repeat-containing protein n=1 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A560EIZ7_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 2.910e-7
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   25 ALLASAIGLAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNRTRAQTQG 198
            A LA A+   A PAA   +ISYTYDALGRVI ++  +GAT+ Y+YD A NRT     G
Sbjct:   18 ATLAGALSCLALPAAAD-SISYTYDALGRVIKSTTSSGATIQYSYDPAGNRTMVSASG 74          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: A0A560HC23_9PROT (YD repeat-containing protein n=1 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A560HC23_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 6.210e-7
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   43 IGLAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNR 177
            +GL A P      ++Y YDALGRVIS +YPN +T++YTYD A NR
Sbjct:    2 VGLGARPVLASG-VTYKYDALGRVISVTYPNNSTISYTYDAAGNR 45          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: A0A2T9JDT2_9CAUL (Uncharacterized protein n=2 Tax=Caulobacter radicis TaxID=2172650 RepID=A0A2T9JDT2_9CAUL)

HSP 1 Score: 54.3 bits (129), Expect = 1.020e-6
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   10 RLGCAALLASAIGLAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNRTR 183
            RLG AAL+AS +   A   A   ++ Y YD+LGRV+  +Y NGA+VTY YD A NRT+
Sbjct:    7 RLGLAALMASCV--CAEALAQTQSVKYRYDSLGRVVQVTYSNGASVTYAYDAAGNRTQ 62          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: V4N3Y1_9CAUL (Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 TaxID=1282363 RepID=V4N3Y1_9CAUL)

HSP 1 Score: 50.4 bits (119), Expect = 1.310e-6
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   43 IGLAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNR 177
            +G+A    +   T +Y YDALGRVI  ++PNG+ VTYTYD A NR
Sbjct:   13 VGMAIASTSLAGTTTYKYDALGRVIEVTFPNGSKVTYTYDAAGNR 57          
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Match: A0A248K0M3_9PROT (Uncharacterized protein n=2 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A248K0M3_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 1.640e-6
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   49 LAAPPAAGQATISYTYDALGRVISASYPNGATVTYTYDNADNRTRAQTQG 198
            LA P +AG   I+YTYDALGRVI ++  NGAT+ Y+YD A NRT     G
Sbjct:   27 LAIPASAGS--ITYTYDALGRVIKSTASNGATIQYSYDAAGNRTTVSATG 74          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6498.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3F3D0C2.560e-852.63RHS repeat protein n=1 Tax=Thauera butanivorans Ta... [more]
A0A350ZYD0_9RHOO3.450e-851.79Uncharacterized protein n=1 Tax=Thauera sp. TaxID=... [more]
UPI000A31F1071.220e-751.52RHS repeat protein n=1 Tax=Methylocaldum sp. RMAD-... [more]
UPI001ADB1F6A1.810e-767.57YD repeat-containing protein n=1 Tax=Brevundimonas... [more]
A0A7S6LX42_9PROT2.180e-751.79RHS repeat protein n=1 Tax=Nitrosomonas sp. H1_AOB... [more]
A0A560EIZ7_9PROT2.910e-753.45YD repeat-containing protein n=1 Tax=Nitrospirillu... [more]
A0A560HC23_9PROT6.210e-755.56YD repeat-containing protein n=1 Tax=Nitrospirillu... [more]
A0A2T9JDT2_9CAUL1.020e-651.72Uncharacterized protein n=2 Tax=Caulobacter radici... [more]
V4N3Y1_9CAUL1.310e-653.33Uncharacterized protein n=1 Tax=Asticcacaulis sp. ... [more]
A0A248K0M3_9PROT1.640e-656.00Uncharacterized protein n=2 Tax=Nitrospirillum ama... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6498contigP-wetherbeei_contig6498:153..383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1134474.O59_004013
PFAMsRHS_repeat
Model size231
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.93e-06
EggNOG OGsCOG3209@1|root,COG3209@2|Bacteria,1NKW2@1224|Proteobacteria,1SIE9@1236|Gammaproteobacteria
DescriptionRHS Repeat
Cds size231
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.8304906-CDS-P-wetherbeei_contig6498:152..3831683186917.8304906-CDS-P-wetherbeei_contig6498:152..383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6498 153..383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6498.1.1prot_P-wetherbeei_contig6498.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6498 153..383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6498.1.1

>prot_P-wetherbeei_contig6498.1.1 ID=prot_P-wetherbeei_contig6498.1.1|Name=mRNA_P-wetherbeei_contig6498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
MRARLGCAALLASAIGLAAPPAAGQATISYTYDALGRVISASYPNGATVT
YTYDNADNRTRAQTQGAIASARAATVL
back to top

mRNA from alignment at P-wetherbeei_contig6498:153..383-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6498.1.1 ID=mRNA_P-wetherbeei_contig6498.1.1|Name=mRNA_P-wetherbeei_contig6498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig6498:153..383- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCTCGCCTGGGATGTGCCGCCTTGCTGGCGTCGGCAATCGGGCT CGCGGCGCCGCCAGCCGCAGGCCAGGCCACGATCAGCTACACCTATGATG CCCTGGGCCGGGTGATCTCGGCCAGCTACCCCAACGGCGCCACCGTCACC TACACCTACGACAACGCCGACAACCGCACCCGTGCGCAGACGCAGGGCGC CATAGCCTCAGCGCGTGCGGCGACCGTTCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6498:153..383-

>mRNA_P-wetherbeei_contig6498.1.1 ID=mRNA_P-wetherbeei_contig6498.1.1|Name=mRNA_P-wetherbeei_contig6498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig6498:153..383- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCTCGCCTGGGATGTGCCGCCTTGCTGGCGTCGGCAATCGGGCT
CGCGGCGCCGCCAGCCGCAGGCCAGGCCACGATCAGCTACACCTATGATG
CCCTGGGCCGGGTGATCTCGGCCAGCTACCCCAACGGCGCCACCGTCACC
TACACCTACGACAACGCCGACAACCGCACCCGTGCGCAGACGCAGGGCGC
CATAGCCTCAGCGCGTGCGGCGACCGTTCTG
back to top