mRNA_P-wetherbeei_contig6490.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6490.2.1
Unique NamemRNA_P-wetherbeei_contig6490.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: A0A383VCQ9_TETOB (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VCQ9_TETOB)

HSP 1 Score: 59.7 bits (143), Expect = 9.240e-9
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    4 EPDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAPLPP 165
            EPDPA V  +   GFS NG++RAA+ATG++  +V + W   H+ D  F+ PLPP
Sbjct:  756 EPDPAIVTQLVTMGFSENGSKRAAVATGNSNAEVAMEWVFAHMEDPDFNDPLPP 809          
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: A0A7S3F8Z6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F8Z6_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 1.330e-6
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    7 PDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAPLPPP 168
            P+   V  +   GFS NG++RAA+ATG+A  +  + W   H+ DA F+ P+PPP
Sbjct:  203 PNEDIVAQLIAMGFSENGSKRAALATGNASAETAMEWVFSHLEDADFNDPIPPP 256          
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: A0A7S1SZS2_9CHLO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SZS2_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 1.380e-6
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    4 EPDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAPLPPP 168
            +P+P  V  +   GFS NG++RAA+ATG++  +  + W   H+ D  F++PLP P
Sbjct:  657 QPNPEIVSQLMSMGFSENGSKRAALATGNSSAEASMEWVFGHMEDPDFNSPLPDP 711          
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: A0A8J6CGZ8_DIALT (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CGZ8_DIALT)

HSP 1 Score: 53.5 bits (127), Expect = 1.380e-6
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1
Query:    1 VEPDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAPL 159
             EP    V  +   GFS NG+RRAA+ATG+A  +  + W   H+H+  FD PL
Sbjct:  656 AEPSEEIVAALVSMGFSHNGSRRAALATGNASTEASMEWVLSHMHEDGFDDPL 708          
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: A0A061QQZ9_9CHLO (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QQZ9_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 2.570e-6
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    4 EPDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAPLP 162
            E DP  V  +   GFS NG++RAAIATG+A  +  + W   H+ D  F+ PLP
Sbjct:  660 EADPQIVAQLISMGFSENGSKRAAIATGNASAEASMEWVFSHMEDPDFNDPLP 712          
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: M4BEC3_HYAAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEC3_HYAAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.520e-6
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 1
Query:   10 DPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAPLPPPR 171
            D A V  +   GFS NG +RAAIATG+A  +  + W   H+ D  FD P PP R
Sbjct:  661 DEALVAQLVAMGFSENGCKRAAIATGNANAEAAMEWILSHMDDPDFDHPPPPAR 714          
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: A0A7R9UE29_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE29_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.680e-5
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1
Query:    7 PDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAPL 159
            PD A V  +   GFSRN A+R+AIA G++  +  L +  +H  D  FDAPL
Sbjct:  301 PDEALVNQIEDMGFSRNAAKRSAIAVGNSNFEEALRYAIDHASDPDFDAPL 351          
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: A0A5D6XVD3_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVD3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.690e-5
Identity = 23/52 (44.23%), Postives = 31/52 (59.62%), Query Frame = 1
Query:    1 VEPDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAP 156
            V PD + V  +   GFS NG +RAAIATG+A  +V + W   H+ D  F+ P
Sbjct:  669 VTPDESLVAQLVSMGFSENGCKRAAIATGNANAEVAMEWIFSHMEDPDFNDP 720          
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Match: A0A2D4C6G6_PYTIN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6G6_PYTIN)

HSP 1 Score: 49.7 bits (117), Expect = 3.160e-5
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 1
Query:    1 VEPDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFDAP 156
            V PD A V  +   GFS NG +RAAIATG+A  +  + W   H+ D  F+ P
Sbjct:  664 VTPDEALVVQLISMGFSENGCKRAAIATGNASAEAAMEWIFSHMEDPDFNDP 715          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6490.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A383VCQ9_TETOB9.240e-948.15Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Scen... [more]
A0A7S3F8Z6_9EUKA1.330e-642.59Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1SZS2_9CHLO1.380e-640.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tetr... [more]
A0A8J6CGZ8_DIALT1.380e-643.40Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Diac... [more]
A0A061QQZ9_9CHLO2.570e-645.28Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Tetr... [more]
M4BEC3_HYAAE3.520e-646.30Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyal... [more]
A0A7R9UE29_9STRA1.680e-545.10Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A5D6XVD3_9STRA1.690e-544.23Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pyth... [more]
A0A2D4C6G6_PYTIN3.160e-544.23Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pyth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6490contigP-wetherbeei_contig6490:2069..2275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog242159.ABO95635
PFAMsUBA,UCH,zf-UBP
Model size207
Max annot lvl3041|Chlorophyta
KEGG koko:K11836
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.06e-09
EggNOG OGsCOG5207@1|root,KOG0944@2759|Eukaryota,37SPQ@33090|Viridiplantae,34H2V@3041|Chlorophyta
EC3.4.19.12
DescriptionUbiquitinyl hydrolase 1
Cds size207
COG categoryO
BRITEko00000,ko01000,ko01002,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.393282-CDS-P-wetherbeei_contig6490:2068..22751683186917.393282-CDS-P-wetherbeei_contig6490:2068..2275Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6490 2069..2275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6490.2.1prot_P-wetherbeei_contig6490.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6490 2069..2275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6490.2.1

>prot_P-wetherbeei_contig6490.2.1 ID=prot_P-wetherbeei_contig6490.2.1|Name=mRNA_P-wetherbeei_contig6490.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
VEPDPAFVELVHKHGFSRNGARRAAIATGHAGVDVLLAWCAEHVHDAAFD
APLPPPRRRHSPKNGAGRV
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mRNA from alignment at P-wetherbeei_contig6490:2069..2275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6490.2.1 ID=mRNA_P-wetherbeei_contig6490.2.1|Name=mRNA_P-wetherbeei_contig6490.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig6490:2069..2275+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGCCCGATCCGGCGTTTGTGGAGCTCGTGCATAAGCACGGCTTCAG CCGCAACGGGGCGCGCCGGGCCGCCATCGCGACGGGCCACGCCGGGGTCG ACGTGCTGCTGGCATGGTGCGCCGAGCACGTGCATGACGCGGCATTCGAT GCGCCGCTCCCGCCGCCGCGCCGGCGACATTCGCCAAAGAACGGTGCTGG TCGTGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6490:2069..2275+

>mRNA_P-wetherbeei_contig6490.2.1 ID=mRNA_P-wetherbeei_contig6490.2.1|Name=mRNA_P-wetherbeei_contig6490.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig6490:2069..2275+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGCCCGATCCGGCGTTTGTGGAGCTCGTGCATAAGCACGGCTTCAG
CCGCAACGGGGCGCGCCGGGCCGCCATCGCGACGGGCCACGCCGGGGTCG
ACGTGCTGCTGGCATGGTGCGCCGAGCACGTGCATGACGCGGCATTCGAT
GCGCCGCTCCCGCCGCCGCGCCGGCGACATTCGCCAAAGAACGGTGCTGG
TCGTGTT
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