mRNA_P-wetherbeei_contig647.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig647.1.1
Unique NamemRNA_P-wetherbeei_contig647.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A835Z9Z5_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z5_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.320e-36
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    7 HNRPPAIGPSVLASDMSMLAAETAACER--SGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDR 270
            H+ P  IGPSVLASDMS LA E+A   +     DY+HLDVMDGHFVPNLTFGAPVIK LRKHT A LDAHLMVS+PA+W+DDMA AGVDR
Sbjct:    1 HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDR 90          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A6H5JRM9_9PHAE (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRM9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.940e-34
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   52 MSMLAAETAACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDR 270
            MS L  E+   ER GADYIHLDVMDGHFVPNLTFGAPVIKGLRKHT A+LDAHLMVS PA+W+DDMAAAGVDR
Sbjct:    1 MSRLMEESLDVERQGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTKALLDAHLMVSHPAQWVDDMAAAGVDR 73          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A8J6CAX6_DIALT (Ribulose-phosphate 3-epimerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAX6_DIALT)

HSP 1 Score: 121 bits (304), Expect = 3.130e-32
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    4 PHNRPPAIGPSVLASDMSMLAAETAACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAG 261
            PH  P  IGPS+LASD++ LA E+     +GADY+HLD+MDGHFVPNLT+GAPV+  LRKHT+A LD HLMVS P++WIDD+A AG
Sbjct:    6 PHKCPAKIGPSLLASDLADLAGESRRVLAAGADYLHLDIMDGHFVPNLTWGAPVVASLRKHTDAFLDCHLMVSRPSQWIDDIAKAG 91          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A0D2WU07_CAPO3 (Ribulose-phosphate 3-epimerase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WU07_CAPO3)

HSP 1 Score: 120 bits (302), Expect = 4.430e-32
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   25 IGPSVLASDMSMLAAETAACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDR 270
            IGPSVLASDMS LA+ET     +GADY+HLDVMDGHFVPN+T GAPVIK LRKH+ A  D H+MVS+P +W+DDMA AG D+
Sbjct:   10 IGPSVLASDMSCLASETQRVVDAGADYVHLDVMDGHFVPNITMGAPVIKCLRKHSKAFFDLHMMVSKPEQWVDDMADAGGDQ 91          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: F2UCI0_SALR5 (Ribulose-phosphate 3-epimerase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UCI0_SALR5)

HSP 1 Score: 119 bits (297), Expect = 3.690e-31
Identity = 57/86 (66.28%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   16 PPAIGPSVLASDMSMLAAETA-ACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDR 270
            P  +GPS+LASD+SMLAA++  A E+  ADY+H+D+MDGHFVPNLT G PV+K LRKHT A LD HLMVS P  W+ DMAAAG DR
Sbjct:   29 PAQVGPSILASDLSMLAADSKKAMEQWTADYLHVDIMDGHFVPNLTIGPPVVKCLRKHTTAFLDCHLMVSNPEHWVKDMAAAGADR 114          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A067C660_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C660_SAPPC)

HSP 1 Score: 117 bits (294), Expect = 4.380e-31
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   25 IGPSVLASDMSMLAAETAACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDR 270
            IGPS+LASD++ L  E      +GADY+HLDVMDGHFVPN+T+GAPVIK LRKHTNA  D H+MVSEP KW+DD+  AG D+
Sbjct:    9 IGPSMLASDLACLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRKHTNAFFDCHMMVSEPEKWVDDIKDAGGDQ 90          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A024U095_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024U095_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.810e-30
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   25 IGPSVLASDMSMLAAETAACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDR 270
            IGPS+LASD+S L  E      +GADY+HLDVMDGHFVPN+T+GAPVIK LRKHT A  D H+MVSEP KW+DD+  AG D+
Sbjct:    9 IGPSMLASDLSCLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRKHTTAFFDVHMMVSEPEKWVDDIKDAGGDQ 90          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A4P9Y0E9_9FUNG (Ribulose-phosphate 3-epimerase n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y0E9_9FUNG)

HSP 1 Score: 115 bits (289), Expect = 2.240e-30
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   25 IGPSVLASDMSMLAAETAACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDR 270
            I PS+L+SD S LA E      +GADY+H+DVMDGHFVPNLT GAP++K LRKHT+A LD HLMVS+PAKW++D A AG  +
Sbjct:    6 IAPSMLSSDFSCLAEEAKRMVDAGADYLHMDVMDGHFVPNLTLGAPIVKSLRKHTDAFLDCHLMVSDPAKWVEDFAKAGASQ 87          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A485KVB4_9STRA (Ribulose-phosphate 3-epimerase n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KVB4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.210e-30
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   25 IGPSVLASDMSMLAAETAACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDR 270
            IGPS+LASD+S L  E      +GADY+HLDVMDGHFVPN+T+GAPVIK LR+HT A  D H+MVSEP KW+DD+  AG D+
Sbjct:    9 IGPSMLASDLSCLKDEALKVVAAGADYLHLDVMDGHFVPNITWGAPVIKSLRQHTKAFFDVHMMVSEPEKWVDDIKDAGGDQ 90          
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Match: A0A087SBR0_AUXPR (Ribulose-phosphate 3-epimerase n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SBR0_AUXPR)

HSP 1 Score: 115 bits (288), Expect = 7.310e-30
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 1
Query:   16 PPAI-GPSVLASDMSMLAAETAACERSGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVD 267
            PPAI  PS+L+SD + LAAE+      GAD++H+DVMDGHFVPNLT G P++K LR HT+A LD HLMVS PA+W+DD AAAGVD
Sbjct:   14 PPAIISPSILSSDFADLAAESKKILSMGADWLHVDVMDGHFVPNLTLGPPIVKALRAHTDAFLDCHLMVSNPAQWVDDFAAAGVD 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig647.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9Z5_9STRA3.320e-3673.33Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema m... [more]
A0A6H5JRM9_9PHAE2.940e-3482.19Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus ... [more]
A0A8J6CAX6_DIALT3.130e-3265.12Ribulose-phosphate 3-epimerase n=1 Tax=Diacronema ... [more]
A0A0D2WU07_CAPO34.430e-3269.51Ribulose-phosphate 3-epimerase n=1 Tax=Capsaspora ... [more]
F2UCI0_SALR53.690e-3166.28Ribulose-phosphate 3-epimerase n=1 Tax=Salpingoeca... [more]
A0A067C660_SAPPC4.380e-3165.85Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024U095_9STRA1.810e-3065.85Ribulose-phosphate 3-epimerase n=2 Tax=Saprolegnia... [more]
A0A4P9Y0E9_9FUNG2.240e-3063.41Ribulose-phosphate 3-epimerase n=1 Tax=Piptocephal... [more]
A0A485KVB4_9STRA7.210e-3064.63Ribulose-phosphate 3-epimerase n=8 Tax=Saprolegnia... [more]
A0A087SBR0_AUXPR7.310e-3064.71Ribulose-phosphate 3-epimerase n=2 Tax=Auxenochlor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig647contigP-wetherbeei_contig647:194..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LR12
Preferred nameRPE
PFAMsRibul_P_3_epim
Model size297
Max annot lvl2759|Eukaryota
KEGG rclassRC00540
KEGG koko:K01783
KEGG ReactionR01529
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0030246,GO:0034641,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0046983,GO:0048029,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575
Exons1
Evalue1.09e-43
EggNOG OGsCOG0036@1|root,KOG3111@2759|Eukaryota
Ec32 ortholog descriptionribulose-phosphate 3-epimerase
Ec32 orthologEc-07_002390.1
EC5.1.3.1
Descriptionribulose-phosphate 3-epimerase activity
Cds size297
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186915.74217-CDS-P-wetherbeei_contig647:193..4901683186915.74217-CDS-P-wetherbeei_contig647:193..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig647 194..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig647.1.1prot_P-wetherbeei_contig647.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig647 194..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig647.1.1

>prot_P-wetherbeei_contig647.1.1 ID=prot_P-wetherbeei_contig647.1.1|Name=mRNA_P-wetherbeei_contig647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MPHNRPPAIGPSVLASDMSMLAAETAACERSGADYIHLDVMDGHFVPNLT
FGAPVIKGLRKHTNAVLDAHLMVSEPAKWIDDMAAAGVDRCAGFSQHT*
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mRNA from alignment at P-wetherbeei_contig647:194..490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig647.1.1 ID=mRNA_P-wetherbeei_contig647.1.1|Name=mRNA_P-wetherbeei_contig647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig647:194..490- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACACAATCGACCGCCGGCGATCGGGCCGTCTGTCCTGGCCTCGGA CATGTCAATGCTGGCGGCAGAGACGGCGGCGTGCGAGCGATCCGGCGCCG ACTACATCCACTTGGACGTGATGGACGGTCACTTTGTGCCCAACCTCACC TTTGGCGCACCGGTTATCAAGGGCCTCCGCAAGCACACCAATGCCGTACT GGACGCCCACCTGATGGTTTCCGAGCCGGCCAAGTGGATCGACGACATGG CAGCCGCAGGAGTGGACAGGTGCGCTGGTTTTTCTCAGCATACTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig647:194..490-

>mRNA_P-wetherbeei_contig647.1.1 ID=mRNA_P-wetherbeei_contig647.1.1|Name=mRNA_P-wetherbeei_contig647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig647:194..490- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACACAATCGACCGCCGGCGATCGGGCCGTCTGTCCTGGCCTCGGA
CATGTCAATGCTGGCGGCAGAGACGGCGGCGTGCGAGCGATCCGGCGCCG
ACTACATCCACTTGGACGTGATGGACGGTCACTTTGTGCCCAACCTCACC
TTTGGCGCACCGGTTATCAAGGGCCTCCGCAAGCACACCAATGCCGTACT
GGACGCCCACCTGATGGTTTCCGAGCCGGCCAAGTGGATCGACGACATGG
CAGCCGCAGGAGTGGACAGGTGCGCTGGTTTTTCTCAGCATACTTGA
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