mRNA_P-wetherbeei_contig6432.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6432.1.1
Unique NamemRNA_P-wetherbeei_contig6432.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Match: A0A6H5K9U1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9U1_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.620e-43
Identity = 112/279 (40.14%), Postives = 152/279 (54.48%), Query Frame = 1
Query:   10 APRACARSMQIIDSKGGCAPPSDIASFV-GAAGATMSVVSILGGRGSGKSTLLNRAFGTDFEVGGAFQREASPGACAAVSESLLLLDCDGADEGLAKPLPAGGATAAITEAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALFGEKVKR---------------HPPPEDARTLMLLAVHDYDPSVEVSALEAAALQDLEAVWSELELPEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSKLAGGARRVRTAGALASAAASAWEGVR 798
            AP A A +M+++D+ G  A  S+I S + G  G  M+VV +LG +GSGKSTLLN+AFGT F VGG   + A  G  AA  + +LLLDCDG +EG      + G TA     +  AFS AL D V++N+W SD+GR+V+SNVR +K LF EK++                        T +++AVHD DP  +  ALE A ++++ AVW E++ P G       D  A  V  + HPRY   AYA A+  L+ KL        TAG        AW+ VR
Sbjct:   50 APVAGAPTMELVDASGKLASASEITSLLSGFGGKAMNVVGVLGSKGSGKSTLLNQAFGTSFSVGGPLSQGAPTGVSAATCDGVLLLDCDGLEEGADPTAISKGTTAG----QATAFSAALSDVVLMNLWRSDLGRSVASNVRTIKTLFSEKLQEIAAAGLTGDLEEVDSSAAAAFRPTPLVVAVHDCDPGADTDALEWAVMEEMLAVWREVDHPSGTTLQECFDIQANIVLAIPHPRYHAVAYATAIEALKQKLQTMEASTATAG-FRDRVTRAWQAVR 323          
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Match: A0A835ZBA4_9STRA (RHD3a, RHD3/Sey1 family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBA4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.790e-29
Identity = 89/262 (33.97%), Postives = 140/262 (53.44%), Query Frame = 1
Query:   25 ARSMQIIDSKGGCAPPSDIASFVGAAGATMSVVSILGGRGSGKSTLLNRAFGTDFEVGGAFQR-EASPGACAAVSESLLLLDCDGADEGLAKPLPAGGATAAITEAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALFGEKVKRHPPPED--ARTL-MLLAVHDYDPSVEVSALEAAALQDLEAVWSELELPEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSKLAGGARRVRTAGALASAAASAWEGVR 798
            A+ + ++DS G  AP  ++ S     G   +VV+ +GG+GS K++LLN AFGT FE    F   ++S  A    ++ +++++CDG                   EA+LAA S A+ D V+VNV+ SD+GR V++NVR  K++F +++      ++  A  L +++ VHD +P V+  A++ A   + +A W EL    G     L+   A+ V  + HPRY PDAYAAA A +R+  A  A    T  + A    +AW   R
Sbjct:   22 AKPVTLVDSAGKLAPNRELISLAARTGERSTVVASVGGKGSRKNSLLNNAFGTAFEAVDTFATGDSSSSATVDGAQGVIVVNCDGVTTD--------------GEAKLAALSAAVADVVVVNVYRSDLGRNVAANVRAFKSVFAQRLAAEQEAKEGTAEPLPLIVVVHDCEPDVDADAIKEAVEAEAQAAWDEL----GGPATPLSVHVALSVAAVPHPRYAPDAYAAAAAAVRATCAADAGS--TTASFAPRLGTAWTATR 263          
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Match: W7TE62_9STRA (GTP-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TE62_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.430e-27
Identity = 84/238 (35.29%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   34 MQIIDSKGGCAPPSDIASFV-----GAAGATMSVVSILGGRGSGKSTLLNRAFGTDFEVGGAFQREASP----GACAAVSESLLLLDCDGADEGLAKPLPAGGATAAITEAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALFGEKVKRHPPPEDARTLMLLAVHDYDPSVEVSALEAAALQDLEAVWSELELPEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSK 720
            +++ID+ G      ++  FV         A + +V   G +GSGKSTLLN+ F TDF +G A    A P      CAA    L+ +D D    G  +         A T  +  A +  L DA+++N+WSSDVGR V  N   L+A+F E++     P   +TL+L+ VHD+         + A L+ LE VW+ L   E +  A L DFF V++  L HPRY+P+ Y  A+ GLR++
Sbjct:   62 LEVIDAAGKLKAKEEVNRFVQKRLKATERAGLVIVGSAGSKGSGKSTLLNKLFDTDFGIGRALGPHARPQGGVALCAAGGGGLVCVDYDAVGTGTEE---------AGTNGKFLALTTKLADAILLNLWSSDVGRNVPYNSLALQAIFQEQLHAEGSP---KTLLLVVVHDHPEEEAGDRTKEAVLEVLETVWASLPRTEEKADAELTDFFDVEMAFLPHPRYRPEEYERALEGLRNR 287          
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Match: A0A5J4YZC2_PORPP (Protein SEY1-like n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZC2_PORPP)

HSP 1 Score: 93.6 bits (231), Expect = 5.430e-18
Identity = 62/228 (27.19%), Postives = 113/228 (49.56%), Query Frame = 1
Query:   82 ASFVGAAGATMSVVSILGGRGSGKSTLLNRAFGTDFEVGGAFQREASPGACAAV--------------SESLLLLDCDGADEGLAKPLPAGGATAAITEAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALFGEKVKRHPPPEDARTLMLLAVHDYDPSVEVSALEAAALQDLEAVWSELELPEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSKL 723
            ASF       +  V++LG   +GKS+LLN  FG  F V  A +   S GA  A               ++++++LD  G D                T+  +A++   LCD ++ N+WS+D+GR  +  + +LK++F E  + + P E  RT ++  V D D +V  S ++   + + + VW+   + +  +   ++  F ++V  L H +++ + +  AVAGLR++L
Sbjct:   34 ASFADTGAEVVKCVAVLGASATGKSSLLNELFGCKFPV--ARRLATSSGAAPADMVRFALPLEDKCPHNQAMVVLDAPGRDA---------------TDVRVASYFAGLCDVILFNLWSTDLGRRDAGRLELLKSVFCESSQMNSPSEAQRTCIVFVVRDNDDNVAESTIKDKLVAEAKRVWASANVSDEFSTLDMSSLFDIEVVALPHAKFRKEEFVGAVAGLRARL 244          
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Match: A0A2U1LW82_ARTAN (Protein ROOT HAIR DEFECTIVE 3 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LW82_ARTAN)

HSP 1 Score: 69.7 bits (169), Expect = 8.040e-10
Identity = 46/161 (28.57%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  334 EAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALFGEKVKRHPPPEDARTLMLLAVHDYDPSVEVSALEAAALQDLEAVWSELELPEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSK---------LAGGARRVRTAGALASAAASAWE 789
            E ++A F+ A+ D V++N+W S +G   ++N  +L+ +F   ++   P    +T ++  + D      +  LE+   +D + +W ++  PE      L+DFF +QV+ LAH +YQ + +   VA LR K         LAG  R V  A   + +A   W+
Sbjct:   74 EKQIALFALAVSDIVLINMWCSAIGCEQAANKPLLRTIFQVMLQLFTP---RKTTLMFVIRDKT-DTPLEKLESLLREDTQKIWDDIPKPEAHKQTPLSDFFNIQVEALAHYKYQKEEFKDEVAILRKKFSKSIEAGGLAGDRRGVVPASGFSLSAQEIWK 230          
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Match: A0A2R6PVW6_ACTCC (Protein ROOT HAIR DEFECTIVE like (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6PVW6_ACTCC)

HSP 1 Score: 62.0 bits (149), Expect = 5.100e-8
Identity = 43/164 (26.22%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  232 CAAVSESLLLLDCDGADEGLAKPLPAGGATAAITEAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALFGEKVKRHPPPEDARTLMLLAVHDYDPSVEVSALEAAALQDLEAVWSELELPEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSKL 723
            CA +   +L++D +G D G  +     G    + E ++A FS A+ D V++N+W  D+GR  ++N  +L+ LF E  + + P    +T ++  + D      +  L     +D   +W+ +  P+      L++ F V+V  L +  YQ + +   VA L+++L
Sbjct:    2 CAGIQPPILVMDLEGND-GTER-----GEENIVFEKQIALFSIAVSDVVLINMWCHDIGREQAANRPLLRILFQEMRRLYKP---RKTTLVYVIRDKS-KTPLDKLAEKLRKDTVQIWNSVPKPQALQDTPLSESFNVEVVALPNYEYQKEDFEEEVAKLKNQL 155          
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Match: A0A7S3KWA3_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KWA3_EUPCR)

HSP 1 Score: 63.2 bits (152), Expect = 9.420e-8
Identity = 56/209 (26.79%), Postives = 98/209 (46.89%), Query Frame = 1
Query:  121 VSILGGRGSGKSTLLNRAFGTDFEV-----GGAFQREASPGACAAVSESLLLLDCDGADEGLAKPLPAGGATAAITEAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALFGEKVKRHPPPEDARTLMLLA--VHDYDPSVE--VSALEAAALQDLEAVWSELELPEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSK 720
            ++I+G + SGKSTLLN  F T+FE       G  Q      A     +++L+ D +G D          G      E   + F+ AL D +++N+W++DVGR  +SN  +LK +F   +K     ++ + L+ +    ++Y+ + E  +  LE     ++  +W E+   E    ++  DFF  +   + H  YQ   +  A   L+ K
Sbjct:   37 IAIIGCQSSGKSTLLNVLFDTNFEQLDQNSRGMAQTTKGVWAARNSEKNILIFDIEGTDS------RERGDDRMTFEQTTSLFALALADVLMINLWTTDVGRYAASNYGLLKVIFEVNLKLFAQNQNQKKLLFVLRDFNEYEHNREKMIELLEG----NVRKIWGEIYKTEEFKDSSPHDFFDFEFHMMPHKIYQKKEFEEAGLQLKEK 235          
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Match: A0A1R2CA56_9CILI (Protein SEY1 homolog n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CA56_9CILI)

HSP 1 Score: 61.6 bits (148), Expect = 3.910e-7
Identity = 53/205 (25.85%), Postives = 101/205 (49.27%), Query Frame = 1
Query:  121 VSILGGRGSGKSTLLNRAFGTDFEVGGAFQ--REASPGACAAVSESL--LLLDCDGADEGLAKPLPAGGATAAITEAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALFGEKVKRHPPPEDARTLMLLAVHDYDPSVE-VSALEAAALQDLEAVWSELELPEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSK 720
            V+I+G + +GKSTLLN  F T+F+   + +   + + G   A + S   L++D +G D  +       G   A  E   A F+ A+ D ++VN+W+S++GR  +++V +LK +F   +K        R L +L   D++  V  +  L+    + +E +W +++ P       + D F      ++   ++P+ +   V  L+ K
Sbjct:   36 VAIIGCQSTGKSTLLNMLFETNFDTLDSMKGRNQTTKGIHLAYNLSCKCLVIDIEGTDSQIR------GDDGAAFEQMSALFALAISDVLMVNMWTSEIGRYKAASVGLLKTIFEVNLKLFGQEGKKRILFIL--RDFNDGVNNLGILKQQISKTMEEIWEKIKKPSHLTLCNVFDCFEFDFHTISSKDFKPEEFKREVGVLKDK 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6432.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K9U1_9PHAE1.620e-4340.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBA4_9STRA5.790e-2933.97RHD3a, RHD3/Sey1 family GTPase n=1 Tax=Tribonema m... [more]
W7TE62_9STRA2.430e-2735.29GTP-binding protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A5J4YZC2_PORPP5.430e-1827.19Protein SEY1-like n=1 Tax=Porphyridium purpureum T... [more]
A0A2U1LW82_ARTAN8.040e-1028.57Protein ROOT HAIR DEFECTIVE 3 n=1 Tax=Artemisia an... [more]
A0A2R6PVW6_ACTCC5.100e-826.22Protein ROOT HAIR DEFECTIVE like (Fragment) n=1 Ta... [more]
A0A7S3KWA3_EUPCR9.420e-826.79Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A1R2CA56_9CILI3.910e-725.85Protein SEY1 homolog n=2 Tax=Stentor coeruleus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6432contigP-wetherbeei_contig6432:22..1138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTX2
PFAMsDUF295,F-box,RHD3
Model size798
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.54e-46
EggNOG OGsKOG2203@1|root,KOG2203@2759|Eukaryota
DescriptionGTP binding
Cds size798
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186913.1223133-CDS-P-wetherbeei_contig6432:21..2521683186913.1223133-CDS-P-wetherbeei_contig6432:21..252Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6432 22..252 -
1683186913.13555-CDS-P-wetherbeei_contig6432:571..11381683186913.13555-CDS-P-wetherbeei_contig6432:571..1138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6432 572..1138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6432.1.1prot_P-wetherbeei_contig6432.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6432 22..1138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6432.1.1

>prot_P-wetherbeei_contig6432.1.1 ID=prot_P-wetherbeei_contig6432.1.1|Name=mRNA_P-wetherbeei_contig6432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp
ACGAPRACARSMQIIDSKGGCAPPSDIASFVGAAGATMSVVSILGGRGSG
KSTLLNRAFGTDFEVGGAFQREASPGACAAVSESLLLLDCDGADEGLAKP
LPAGGATAAITEAELAAFSGALCDAVIVNVWSSDVGRAVSSNVRMLKALF
GEKVKRHPPPEDARTLMLLAVHDYDPSVEVSALEAAALQDLEAVWSELEL
PEGRNGAALADFFAVQVQPLAHPRYQPDAYAAAVAGLRSKLAGGARRVRT
AGALASAAASAWEGVR
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mRNA from alignment at P-wetherbeei_contig6432:22..1138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6432.1.1 ID=mRNA_P-wetherbeei_contig6432.1.1|Name=mRNA_P-wetherbeei_contig6432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1117bp|location=Sequence derived from alignment at P-wetherbeei_contig6432:22..1138- (Phaeothamnion wetherbeei SAG_119_79)
GCGTGCGGTGCTCCACGTGCATGTGCAAGATCAATGCAGATCATCGACAG CAAGGGAGGATGCGCGCCGCCGAGCGACATCGCCAGCTTCGTGGGTGCGG CAGGCGCGACCATGTCGGTCGTAAGCATTTTGGGAGGTAGGGGCAGCGGC AAAAGCACACTGCTCAACCGTGCCTTTGGCACCGATTTTGAGGTGGGAGG GGCGTTCCAGCGCGAGGCCTCGCCCGGAGCGTGCGCAGCCGTCTCAGAGA GCCTGCTGCTGCTCGACTGCGACGGCGCCGATGAAGGATTGGCGAAGCCA TTGCCGGCCGGCGGGGCCACTGCTGCAATCACCGAGGCGGAGCTCGCCGC CTTCTCCGGCGCGCTCTGTGACGCCGTCATCGTCAACGTGTGGAGCAGCG ATGTCGGCCGCGCCGTCTCCTCGAACGTGAGGATGCTGAAGGCTTTGTTT GGCGAGAAGGTGAAGCGCCACCCGCCGCCAGAGGATGCCCGGACTCTCAT GCTCCTCGCGGTGCACGACTATGACCCAAGCGTCGAAGTCTCTGCGCTGG AGGCCGCCGCCCTGCAGGTGCGCGTATGACATTTTGCTCGAGCTTTCGTT TCAAGACTCGTTTTCCCTCCTCTGTGTCTGCTGGCTCCGTTCATTCAGCC CACCGTCCTGCGCCATGCCGTCTTGCGGTAAGAACCGAGCGTGCTTTTTT CGAGGCTGACACCTCTTGGAGCCGCTTTTTTGTAGGCGGGTTTTGAGCCG GCCACTTGACTGTCTGGCAGGGTGCAGTTGACCTCGATGCTGAGACCTTT TAGATCGGCCGCCACGGCCGTCGAGCCGCCCCCGTCAAACTGCTGCTGCC TCCGGCGCATCTCGAACTCTTTCTTTCCGTTTACAGGACCTGGAGGCGGT GTGGTCGGAGCTGGAGCTGCCAGAGGGCCGCAACGGCGCAGCGCTCGCCG ACTTCTTCGCGGTGCAGGTGCAACCGCTCGCGCACCCACGCTATCAGCCC GACGCCTACGCCGCCGCCGTGGCGGGCCTGCGCAGCAAGTTGGCCGGCGG CGCCCGCCGCGTCCGCACCGCCGGCGCGCTGGCGAGTGCGGCGGCGTCGG CGTGGGAAGGGGTCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6432:22..1138-

>mRNA_P-wetherbeei_contig6432.1.1 ID=mRNA_P-wetherbeei_contig6432.1.1|Name=mRNA_P-wetherbeei_contig6432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig6432:22..1138- (Phaeothamnion wetherbeei SAG_119_79)
GCGTGCGGTGCTCCACGTGCATGTGCAAGATCAATGCAGATCATCGACAG
CAAGGGAGGATGCGCGCCGCCGAGCGACATCGCCAGCTTCGTGGGTGCGG
CAGGCGCGACCATGTCGGTCGTAAGCATTTTGGGAGGTAGGGGCAGCGGC
AAAAGCACACTGCTCAACCGTGCCTTTGGCACCGATTTTGAGGTGGGAGG
GGCGTTCCAGCGCGAGGCCTCGCCCGGAGCGTGCGCAGCCGTCTCAGAGA
GCCTGCTGCTGCTCGACTGCGACGGCGCCGATGAAGGATTGGCGAAGCCA
TTGCCGGCCGGCGGGGCCACTGCTGCAATCACCGAGGCGGAGCTCGCCGC
CTTCTCCGGCGCGCTCTGTGACGCCGTCATCGTCAACGTGTGGAGCAGCG
ATGTCGGCCGCGCCGTCTCCTCGAACGTGAGGATGCTGAAGGCTTTGTTT
GGCGAGAAGGTGAAGCGCCACCCGCCGCCAGAGGATGCCCGGACTCTCAT
GCTCCTCGCGGTGCACGACTATGACCCAAGCGTCGAAGTCTCTGCGCTGG
AGGCCGCCGCCCTGCAGGACCTGGAGGCGGTGTGGTCGGAGCTGGAGCTG
CCAGAGGGCCGCAACGGCGCAGCGCTCGCCGACTTCTTCGCGGTGCAGGT
GCAACCGCTCGCGCACCCACGCTATCAGCCCGACGCCTACGCCGCCGCCG
TGGCGGGCCTGCGCAGCAAGTTGGCCGGCGGCGCCCGCCGCGTCCGCACC
GCCGGCGCGCTGGCGAGTGCGGCGGCGTCGGCGTGGGAAGGGGTCCGG
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