mRNA_P-wetherbeei_contig643.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig643.8.1
Unique NamemRNA_P-wetherbeei_contig643.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: A0A7S1CA25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA25_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.780e-11
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  112 GKIRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHWNTRGRPPETVTIRASN 336
            G   + +S  HG ++L+R+AGLTF  GDG  D  +   G +AD+NRA+D  VYRPD  WN      +TV +  S+
Sbjct:  837 GGATLRLSVEHGTLTLTRVAGLTFAEGDGERDRAIECSGALADINRAIDDMVYRPDAEWNNALNSRDTVAMSISD 911          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: A0A835YPH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.190e-9
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   94 AASHWQGKIRVEISAAHGRISLSR-IAGLTFFAGDGVADA-FVTAEGHVADVNRALDGAVYRPDIHWNTRGRPPETVTIRASN 336
            A   W G+I V +   +GR++L+  + GL F +G     A  +   GHVADVN AL G VYRPD ++NT GRP   V + ASN
Sbjct: 6308 APPRWPGRIAVTLQTWNGRLALAAPVGGLAFSSGALRTPAPLLEFSGHVADVNAALAGLVYRPDANFNTEGRPYARVAVTASN 6390          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: UPI001AF6EB3E (Tandem-95 repeat protein n=2 Tax=Methylobacterium aquaticum TaxID=270351 RepID=UPI001AF6EB3E)

HSP 1 Score: 58.9 bits (141), Expect = 9.240e-8
Identity = 37/94 (39.36%), Postives = 48/94 (51.06%), Query Frame = 1
Query:   22 GTAAHTFADFGATDGNPALDPALHAASHWQGKIRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHWNTRGR 303
            G    T   F A  GN     A+       G + V +SA  G +SLSR+ GLTF AGDG  DA +T  G +AD++ ALDG  + P   +N   R
Sbjct:  801 GATEDTDLVFSAATGN-----AVRVDDRDGGPLTVTLSADQGLLSLSRLTGLTFAAGDGANDAAMTFTGSIADIDAALDGLRFAPRADYNGSAR 889          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: A0A519FW17_9BURK (Uncharacterized protein (Fragment) n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519FW17_9BURK)

HSP 1 Score: 56.6 bits (135), Expect = 5.830e-7
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  118 IRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHWNTRGRPPETVTIRASN 336
            +RV +S AHG +SLS +AGL+F  GDG  DA +   G VA++N AL    Y P   +N     P+T+T+  S+
Sbjct: 1057 LRVTLSVAHGTLSLSGLAGLSFITGDGTLDASMVFTGTVANINAALASMTYVPASDYNG----PDTLTLVTSD 1125          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: A0A231N3R6_9GAMM (DUF4347 domain-containing protein n=3 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A231N3R6_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.490e-6
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   49 FGATDGNPALDPALHAASHWQGKIRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHWN 291
            F + +GNP     + A S   G +RV ++A++G ++L    GL+F  G G ADA +T EG +AD+N AL+G  + P   +N
Sbjct: 1305 FSSGNGNPISVSDVDAGS---GSVRVTLTASNGLLTLGGTTGLSFINGSGTADATMTFEGTLADINLALNGLAFSPTGGYN 1382          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: UPI0019220806 (DUF4347 domain-containing protein n=1 Tax=Zobellella sp. CGMCC 1.18722 TaxID=2803811 RepID=UPI0019220806)

HSP 1 Score: 54.3 bits (129), Expect = 3.830e-6
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   49 FGATDGNPALDPALHAASHWQGKIRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHWN 291
            F + +GNP     + A     G +RV ++A++G ++L    GL+F  G G ADA +T EG +AD+N AL+G  + P   +N
Sbjct: 1553 FSSGNGNPISVSDVDAGG---GSVRVTLTASNGLLTLGGTTGLSFINGSGTADATMTFEGSLADINLALNGLAFSPTGGYN 1630          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: UPI001AD166E2 (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001AD166E2)

HSP 1 Score: 53.9 bits (128), Expect = 5.000e-6
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  118 IRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDI 282
            + V ++A +G ++L+ +AGLTF AGDG ADA +T  G++ D+N AL+GA + P +
Sbjct:  806 LEVTLTATNGTLTLAALAGLTFNAGDGTADAAMTFTGNLTDINAALNGASFTPAL 860          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: UPI000A55C0C6 (putative Ig domain-containing protein n=1 Tax=Cellvibrio sp. OA-2007 TaxID=529823 RepID=UPI000A55C0C6)

HSP 1 Score: 53.1 bits (126), Expect = 9.600e-6
Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 1
Query:   25 TAAHTFADFGATDGNPALDPALHAASHWQGKIRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHWNTRGRPPETVTIRASN 336
            T+  T   F A +GN      + A       ++V IS AHG +SLS +AGLTF  G G+AD  +   G VA++N AL    Y PD  ++      ET++I  ++
Sbjct: 1549 TSEDTDLIFSAGNGNQIQITDVDAGGS---SVQVSISVAHGILSLSSVAGLTFSTGIGLADRSMVFTGTVANINNALSTLYYTPDNGYSGA----ETLSITTND 1645          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: UPI000D389EBB (hypothetical protein n=1 Tax=Devosia naphthalenivorans TaxID=2082392 RepID=UPI000D389EBB)

HSP 1 Score: 52.4 bits (124), Expect = 1.770e-5
Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  112 GKIRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHWN 291
            G +RV ++A++G ++LS  AGL+F  G G  D  +T EG + D+N ALDG  + P++ ++
Sbjct:  951 GTLRVSLTASNGALTLSSTAGLSFVLGSGSGDLTMTFEGTLTDINAALDGMSFNPNLGYH 1010          
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Match: A0A1I0CXD1_9DELT (Outer membrane protein OmpA n=4 Tax=Stigmatella TaxID=40 RepID=A0A1I0CXD1_9DELT)

HSP 1 Score: 52.4 bits (124), Expect = 1.820e-5
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 1
Query:  118 IRVEISAAHGRISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHW 288
            +RV ++A  G  +LS  +GLTF  GDG ADA ++ EG + D+N AL+G  Y+P  ++
Sbjct:  245 LRVTLAANQGAATLSGTSGLTFLGGDGTADAAMSFEGKLVDINAALNGLKYKPRANF 301          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig643.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7S1CA25_9STRA3.780e-1142.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835YPH6_9STRA1.190e-944.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001AF6EB3E9.240e-839.36Tandem-95 repeat protein n=2 Tax=Methylobacterium ... [more]
A0A519FW17_9BURK5.830e-742.47Uncharacterized protein (Fragment) n=1 Tax=Rubrivi... [more]
A0A231N3R6_9GAMM1.490e-638.27DUF4347 domain-containing protein n=3 Tax=Zobellel... [more]
UPI00192208063.830e-637.04DUF4347 domain-containing protein n=1 Tax=Zobellel... [more]
UPI001AD166E25.000e-645.45Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI000A55C0C69.600e-635.58putative Ig domain-containing protein n=1 Tax=Cell... [more]
UPI000D389EBB1.770e-540.00hypothetical protein n=1 Tax=Devosia naphthalenivo... [more]
A0A1I0CXD1_9DELT1.820e-543.86Outer membrane protein OmpA n=4 Tax=Stigmatella Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig643contigP-wetherbeei_contig643:7150..7487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6U7
Model size338
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.86e-21
EggNOG OGs28IVJ@1|root,2QR77@2759|Eukaryota
Ec32 ortholog descriptionuncharacterized protein
Ec32 orthologEc-01_012180.1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.992325-CDS-P-wetherbeei_contig643:7151..74871683186912.992325-CDS-P-wetherbeei_contig643:7151..7487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig643 7152..7487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig643.8.1prot_P-wetherbeei_contig643.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig643 7152..7487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig643.8.1

>prot_P-wetherbeei_contig643.8.1 ID=prot_P-wetherbeei_contig643.8.1|Name=mRNA_P-wetherbeei_contig643.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
LGRRQLPGTAAHTFADFGATDGNPALDPALHAASHWQGKIRVEISAAHGR
ISLSRIAGLTFFAGDGVADAFVTAEGHVADVNRALDGAVYRPDIHWNTRG
RPPETVTIRASN
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mRNA from alignment at P-wetherbeei_contig643:7150..7487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig643.8.1 ID=mRNA_P-wetherbeei_contig643.8.1|Name=mRNA_P-wetherbeei_contig643.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=338bp|location=Sequence derived from alignment at P-wetherbeei_contig643:7150..7487- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGTCGCCGGCAGCTGCCGGGCACGGCGGCGCACACCTTCGCCGACTT CGGCGCAACTGACGGCAATCCTGCGCTCGACCCGGCGCTGCACGCCGCGT CGCACTGGCAGGGGAAGATCCGGGTGGAAATTTCTGCGGCGCACGGCCGG ATCTCTCTCTCGCGGATCGCTGGCCTGACCTTTTTCGCAGGGGACGGCGT CGCCGACGCCTTCGTGACGGCGGAAGGGCACGTGGCAGACGTAAATCGTG CGCTGGACGGCGCCGTCTACCGGCCGGACATCCATTGGAACACGCGTGGG CGGCCACCGGAAACGGTGACAATCCGCGCCAGCAACAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig643:7150..7487-

>mRNA_P-wetherbeei_contig643.8.1 ID=mRNA_P-wetherbeei_contig643.8.1|Name=mRNA_P-wetherbeei_contig643.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig643:7150..7487- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGTCGCCGGCAGCTGCCGGGCACGGCGGCGCACACCTTCGCCGACTT
CGGCGCAACTGACGGCAATCCTGCGCTCGACCCGGCGCTGCACGCCGCGT
CGCACTGGCAGGGGAAGATCCGGGTGGAAATTTCTGCGGCGCACGGCCGG
ATCTCTCTCTCGCGGATCGCTGGCCTGACCTTTTTCGCAGGGGACGGCGT
CGCCGACGCCTTCGTGACGGCGGAAGGGCACGTGGCAGACGTAAATCGTG
CGCTGGACGGCGCCGTCTACCGGCCGGACATCCATTGGAACACGCGTGGG
CGGCCACCGGAAACGGTGACAATCCGCGCCAGCAAC
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