mRNA_P-wetherbeei_contig6365.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6365.1.1
Unique NamemRNA_P-wetherbeei_contig6365.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6365.1.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 9.990e-37
Identity = 98/204 (48.04%), Postives = 137/204 (67.16%), Query Frame = 1
Query:    7 ALNALLDFMDGAGALFGQLCPDVAVEPPIRYNGGAGRGALEELFKTYAEAAFAAEG--GTMPRLDRLQDLFGIKDSKANALSQKVMMNAVMRMMKDGGGEDG-MKGLMNMLGGMPGMDGGXXXXXXXXXXXGGMDAAALKQQVSELKQMLENDEVGPMEVAELRQVYKQQGIDIDDLVRQTDPILD-TLDEDARELFTIFKKLL 606
            A NALL +MD AGALF  LCP +A++P I+YNG   RG LE++F+  A++   + G  G M  LDRLQDLF IK SKA++++QK+MM+ +M+MM +GGGEDG  +GL  M+  M GM+G    XXXXXXX  G      K++V  LKQM+E+ +    EV  LR++Y   G+DID LV   DP ++ ++D DA+E+  + +KLL
Sbjct:  560 ASNALLKYMDEAGALFVTLCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQMMSLDRLQDLFSIKKSKADSITQKIMMDLMMKMMSEGGGEDGDAEGLEKMMAAMGGMEG----XXXXXXXGAGRSPEDHKREVEALKQMVESGDCPKEEVDALRKMYTDAGLDIDTLVN--DPNMEASMDADAKEVVVLLRKLL 757          
BLAST of mRNA_P-wetherbeei_contig6365.1.1 vs. uniprot
Match: A0A835Z1E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.590e-27
Identity = 75/209 (35.89%), Postives = 116/209 (55.50%), Query Frame = 1
Query:    7 ALNALLDFMDGAGALFGQLCPDVAVEPPIRYNGGAGRGALEELFKTYAEAAFAAEGGTMP-RLDRLQDLFGIKDSKANALSQKVMMNAVMRMMKDGGGEDGMKGLMNML------GGMPGMDGGXXXXXXXXXXXGGMDAAALKQQVSELKQMLENDEVGPMEVAELRQVYKQQGIDIDDLVRQTDPILDTLDEDARELFTIFKKLLQK 612
            AL+ LL +MD AG  F  +CP VA++PP+RYNG A +  LEEL++ +  A    +   M  R +RL+D+  IK+SKA +L QKV+M  V +MMK+GG                  GGMP                 G + AA   Q+   K M+++  V   EV ELR++YK  G+DID +V ++     T+D +A+EL+++ +++L++
Sbjct:  363 ALSDLLLYMDNAGGTFAAVCPGVALDPPLRYNGAAKKRQLEELYENFTRAMVTDQSADMSARQERLRDMLNIKESKARSLEQKVLMEVVQKMMKEGGDXXXXXXXXXXXXXXXEGGGMP----------------EGPEVAA---QLEAFKAMVKDGNVSRDEVTELRKMYKDMGMDIDQMVAESAAAESTMDREAKELYSLLRQMLEQ 552          
BLAST of mRNA_P-wetherbeei_contig6365.1.1 vs. uniprot
Match: H6WBA5_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA5_VAULI)

HSP 1 Score: 110 bits (275), Expect = 4.910e-25
Identity = 68/204 (33.33%), Postives = 117/204 (57.35%), Query Frame = 1
Query:    7 ALNALLDFMDGAGALFGQLCPDVAVEPPIRYNGGAGRGALEELFKTYAEAAFAAEGGT--MPRLDRLQDLFGIKDSKANALSQKVMMNAVMRMMKDGGGEDGMKGLMNMLGGMPGMDGGXXXXXXXXXXXGGMDAAALKQQVSELKQMLENDEVGPMEVAELRQVYKQQGIDIDDLVRQTDPILDTLDEDARELFTIFKKLLQK 612
            AL  L+ FM  +G++F  +CP + ++PP+RYNGG+ +  LEE++ + + A+ ++E     M     ++DL GIK+ KA A+ QK MM+A+  M+KDGGG+   +  M  L    G +GG                  ++ Q+   K +++  +V   EV ELR++YK+ G+DID LV++++     +D   RELF + +++L +
Sbjct:  217 ALMGLVRFMKVSGSVFEAVCPGIVLDPPLRYNGGSKKKQLEEIYASLS-ASISSENSEELMSFQKEIRDLLGIKEFKAKAIEQKAMMDALQNMVKDGGGDGSSQEQMAALLQNIGANGGPEPEMP--------SGPEMEAQLESFKNLVKGGQVTEEEVKELRKMYKEMGMDIDKLVKESEGNEGMMDAQGRELFDLLRQMLSQ 411          
BLAST of mRNA_P-wetherbeei_contig6365.1.1 vs. uniprot
Match: A0A6U2CVC5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2CVC5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.730e-23
Identity = 71/214 (33.18%), Postives = 112/214 (52.34%), Query Frame = 1
Query:    7 ALNALLDFMDGAGALFGQLCPDVAVEPPIRYNGGAGRGALEELFKTYAEAAFAAEGGTMPRLDRLQDLFGIKDSKANALSQKVMMNAVMRMMKD---------GGGEDGMKGLMNMLGGMPGMDGGXXXXXXXXXXXGGMDAAALKQQVSELKQMLENDEVGPMEVAELRQVYKQQ-GIDIDDLVRQTDP--ILDTLDEDARELFTIFKKLLQK 612
            A+N ++DFMD A  LF     +     P+ Y+G   R  L+ L+ TYA A    E  T  R+D LQ+LF IKD KA  L QK MM ++M+MMKD         G   +GM  +M+ +GGM G  G            G +    +K+ V  +K+++E+  V   E+  +++ +K Q G+DI +++ Q D   + + L +   EL  +FK +L++
Sbjct:   84 AINVVMDFMDHAAGLFEPFLVEGVEIKPVTYSGTLPRSKLDNLYATYASAVMTTENVTQDRIDMLQELFEIKDKKAEGLVQKKMMGSLMKMMKDPEAMKDLENGPMGEGMAEMMSAMGGMDGAGG----LGMLGGGDGEVSPEEIKESVKLMKELVESGGVSKEEMDLVKEQFKAQYGMDIKEIIAQADSAEVKEQLGDQGEELIEMFKAILKQ 293          
BLAST of mRNA_P-wetherbeei_contig6365.1.1 vs. uniprot
Match: A0A7S1G0E7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0E7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.300e-21
Identity = 86/217 (39.63%), Postives = 124/217 (57.14%), Query Frame = 1
Query:    1 VTALNALLDFMDGAGALF-GQLCPDVAVEPPIRYNGGAGRGALEELFKTYAEAAFAAEGG--TMPRLDRLQDLFGIKDSKANALSQKVMMNAVMRMMKDGGGEDGMKGLMNMLGGMPGMDGGXXXXXXXXXXXGGMDAAA---------LKQQVSELKQMLENDEVGPMEVAELRQVYKQQ-GIDIDDLVRQTD--PILDTLDEDARELFTIFKKLL 606
            V AL+ ++DFM+ A  LF G +  +V +E  + Y+G  G+G LE+L+  YAE + A   G  +M RL  LQ+L GIKD KA  +SQK MM   M+MM+DG  EDG                 XXXXXXXXXXX GM  A          LKQ V+ +KQ++E+  +   ++  +R+ +    G+DI++L+ Q D   + + L ED REL  +FK++L
Sbjct:   26 VRALDVVIDFMNHAAELFLGVIGDEVTIEAVV-YSGSLGKGKLEQLYSAYAEGSMAGTKGKASMDRLGDLQNLLGIKDKKAEGISQKAMMKGFMKMMQDG--EDGEGDXXXXXXXXXXXXXXXXXXXXXXXXXXGMPGAEDMKEPSPEELKQGVAMMKQLVESGAISKDDLKAIREEFASNFGMDINELIEQADNPDVKEALGEDGRELLNLFKQVL 239          
BLAST of mRNA_P-wetherbeei_contig6365.1.1 vs. uniprot
Match: A0A7S1Z1B7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z1B7_TRICV)

HSP 1 Score: 92.0 bits (227), Expect = 2.840e-19
Identity = 53/118 (44.92%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   10 LNALLDFMDGAGALFGQLCPDVAVEPPIRYNGGAGRGALEELFKTYAEAAFAAEGGTMPRLDRLQDLFGIKDSKANALSQKVMMNAVMRMMKD--------GGGEDGMKGLMNMLGGM 339
            +N ++DFMD A  LF     +     P+ Y G  GR  LE+L+ TYA A   AEG T  R+D LQ+LF IKD KA  L QK MM  +M+MMKD        GG  +GM  +M  +GGM
Sbjct:  122 INVVMDFMDHAAGLFEPFLVEGVSITPVTYGGTLGRNKLEQLYSTYASAVMTAEGVTQDRIDMLQELFEIKDKKAEGLVQKKMMANLMKMMKDPEAMKDLEGGMGEGMAEMMAAMGGM 239          
BLAST of mRNA_P-wetherbeei_contig6365.1.1 vs. uniprot
Match: A0A7S4JJA8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JJA8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.200e-17
Identity = 77/213 (36.15%), Postives = 116/213 (54.46%), Query Frame = 1
Query:    7 ALNALLDFMDGAGALFGQLCPDVAVEPPIRYNGGAGRGALEELFKTYAEAAFAAEGGTMPRLDRLQDLFGIKDSKANALSQKVMMNAVMRMMKDGGGEDGMKG--LMNMLGGMPGMDGGXXXXXXXXXXXGGMDAAA------LKQQVSELKQMLENDEVGPMEVAELRQVYK-QQGIDIDDLVRQ--TDPILDTLDEDARELFTIFKKLLQK 612
            A+N ++DFMD A  LF     +     P+ Y G   R  LE+L+ TYA      E  T  R+D LQ+LF IKD KA  L QK MM ++M+MMKD      M+G  +  M+         XXXXXXXXXXX  MD  A      +K+ V  +K ++E+  V   E+  +++ +K Q G+DI +++ Q  +D + + L +   EL  +F+ +L++
Sbjct:  775 AINIVMDFMDHAAGLFEPFLVEGVELKPVTYGGALSRNKLEQLYATYATGVMTTESVTQDRIDMLQELFEIKDKKAEGLVQKKMMGSLMKMMKDPEAMKDMEGGPMAEMMXXXX-----XXXXXXXXXXXXXMDPNAEVSPEEIKESVKLMKDLIESGGVSKEEMDLVKEQFKVQYGMDIKEIIEQADSDEVKEQLGDQGEELIEMFQAILKQ 982          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6365.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KWI4_9PHAE9.990e-3748.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z1E0_9STRA1.590e-2735.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H6WBA5_VAULI4.910e-2533.33Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A6U2CVC5_9STRA1.730e-2333.18Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1G0E7_9STRA1.300e-2139.63Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1Z1B7_TRICV2.840e-1944.92Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4JJA8_9STRA4.200e-1736.15Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6365contigP-wetherbeei_contig6365:9..866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKD4
Model size618
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.95e-33
EggNOG OGs2CI7K@1|root,2S3QS@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_001190.1
Cds size588
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186908.0032308-UTR-P-wetherbeei_contig6365:8..381683186908.0032308-UTR-P-wetherbeei_contig6365:8..38Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6365 9..38 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186908.0155253-CDS-P-wetherbeei_contig6365:38..2121683186908.0155253-CDS-P-wetherbeei_contig6365:38..212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6365 39..212 +
1683186908.0258062-CDS-P-wetherbeei_contig6365:452..8661683186908.0258062-CDS-P-wetherbeei_contig6365:452..866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6365 453..866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6365.1.1prot_P-wetherbeei_contig6365.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6365 39..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6365.1.1

>prot_P-wetherbeei_contig6365.1.1 ID=prot_P-wetherbeei_contig6365.1.1|Name=mRNA_P-wetherbeei_contig6365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=196bp
MDGAGALFGQLCPDVAVEPPIRYNGGAGRGALEELFKTYAEAAFAAEGGT
MPRLDRLQDLFGIKDSKANALSQKVMMNAVMRMMKDGGGEDGMKGLMNML
GGMPGMDGGGFGGGGGGPSGGGMDAAALKQQVSELKQMLENDEVGPMEVA
ELRQVYKQQGIDIDDLVRQTDPILDTLDEDARELFTIFKKLLQKG*
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mRNA from alignment at P-wetherbeei_contig6365:9..866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6365.1.1 ID=mRNA_P-wetherbeei_contig6365.1.1|Name=mRNA_P-wetherbeei_contig6365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=858bp|location=Sequence derived from alignment at P-wetherbeei_contig6365:9..866+ (Phaeothamnion wetherbeei SAG_119_79)
GTGACGGCGCTGAACGCTCTGCTGGACTTTATGGACGGCGCCGGTGCACT GTTCGGGCAGCTATGCCCCGACGTCGCGGTGGAACCGCCGATCCGTTACA ACGGCGGCGCCGGGCGGGGCGCGCTCGAGGAGCTCTTCAAGACGTACGCC GAGGCGGCCTTCGCCGCGGAGGGGGGCACCATGCCGCGCCTCGATAGATT GCAGGTAAGGAACGCAAATGATGGAGGGAGAGAGAGGATTTGGCGTCCGT TTGAAGTCTTGCAATTATGATGGCTTCAGCAGTGACGGTGACGACGGCGG CGGGTGGTTACGTCAACTGGCGGGTTGCAGTGTCGCGCAGCAACCGGGGA GGTTCGATTGCGGCTGCAGAAAACCTTCGAATCACAGCTGTTTTGGTCGC TGCGTCCTTCCCTCTGTCGCTGCTTCTGCCGCCGCCGCTCGCAGGACTTG TTCGGCATCAAAGACAGCAAGGCCAACGCCCTGAGCCAGAAGGTGATGAT GAACGCCGTCATGCGCATGATGAAGGACGGCGGCGGCGAGGATGGCATGA AGGGTCTCATGAACATGCTCGGCGGCATGCCCGGCATGGACGGCGGCGGC TTCGGCGGCGGCGGCGGTGGCCCGAGCGGCGGCGGCATGGACGCTGCGGC ACTCAAGCAACAGGTGTCGGAGCTCAAACAGATGCTTGAAAACGACGAAG TCGGGCCAATGGAGGTCGCGGAACTGCGGCAAGTCTATAAGCAGCAAGGG ATCGATATTGACGACCTGGTGCGGCAGACGGACCCCATTCTCGACACGCT CGACGAAGACGCCCGCGAGCTCTTCACCATCTTCAAGAAGCTCCTCCAGA AGGGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6365:9..866+

>mRNA_P-wetherbeei_contig6365.1.1 ID=mRNA_P-wetherbeei_contig6365.1.1|Name=mRNA_P-wetherbeei_contig6365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=588bp|location=Sequence derived from alignment at P-wetherbeei_contig6365:9..866+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGCGCCGGTGCACTGTTCGGGCAGCTATGCCCCGACGTCGCGGT
GGAACCGCCGATCCGTTACAACGGCGGCGCCGGGCGGGGCGCGCTCGAGG
AGCTCTTCAAGACGTACGCCGAGGCGGCCTTCGCCGCGGAGGGGGGCACC
ATGCCGCGCCTCGATAGATTGCAGGACTTGTTCGGCATCAAAGACAGCAA
GGCCAACGCCCTGAGCCAGAAGGTGATGATGAACGCCGTCATGCGCATGA
TGAAGGACGGCGGCGGCGAGGATGGCATGAAGGGTCTCATGAACATGCTC
GGCGGCATGCCCGGCATGGACGGCGGCGGCTTCGGCGGCGGCGGCGGTGG
CCCGAGCGGCGGCGGCATGGACGCTGCGGCACTCAAGCAACAGGTGTCGG
AGCTCAAACAGATGCTTGAAAACGACGAAGTCGGGCCAATGGAGGTCGCG
GAACTGCGGCAAGTCTATAAGCAGCAAGGGATCGATATTGACGACCTGGT
GCGGCAGACGGACCCCATTCTCGACACGCTCGACGAAGACGCCCGCGAGC
TCTTCACCATCTTCAAGAAGCTCCTCCAGAAGGGGTAG
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