mRNA_P-wetherbeei_contig6318.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6318.1.1
Unique NamemRNA_P-wetherbeei_contig6318.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: A0A6H5KTK2_9PHAE (VOC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK2_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 4.100e-51
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 2
Query:  191 RARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFETGGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFEP 535
            RAR++IL++RDV +   FYGE GLGL L+HSSD +AEFETGGTPL+LK A+  +EA CSVGYSPLLCFDV DM+  VQR L MG HLDGPIKYPA+G VAS+RSPDGHM+GLF+P
Sbjct:    2 RARSVILLIRDVGKGVQFYGEGGLGLALKHSSDTMAEFETGGTPLVLKMAA--SEAACSVGYSPLLCFDVPDMDHAVQRALGMGGHLDGPIKYPAHGAVASIRSPDGHMVGLFQP 114          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: W7TYR3_9STRA (VOC domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYR3_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.520e-46
Identity = 77/118 (65.25%), Postives = 92/118 (77.97%), Query Frame = 2
Query:  185 MARARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFETGGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFEPA 538
            +A  RN++LMLRD+  A  FYG+ GLGL L   SD  AEF+TGGTPL+LK A    EA+CS GYSPLLCFDV DM++T+ R LQ+GA LDGPIKYP YGK+  +RSPDGHMIGLFEP+
Sbjct:    5 LANFRNVVLMLRDLPSAVTFYGKEGLGLALTRRSDMTAEFDTGGTPLVLKVAD--GEAMCSTGYSPLLCFDVVDMDTTIVRLLQLGASLDGPIKYPLYGKIGMIRSPDGHMIGLFEPS 120          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: K3WVE3_GLOUD (VOC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVE3_GLOUD)

HSP 1 Score: 130 bits (326), Expect = 1.590e-33
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 2
Query:  191 RARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFET-GGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFEPAHFD*FT 556
            R R ++++ RD++R+T F+ E GLGL L  SSD  AEF+   G PL +K A   NEA CS GYSP L FD+ D+  TV R L MGA +DGPIKYPA+GKVA++RSPDG MIGL+EP  ++  T
Sbjct:    2 RLRQVLILSRDLARSTRFFQE-GLGLKLLRSSDTFAEFDIKAGVPLCIKLAQ--NEAACSTGYSPFLNFDIQDLSDTVPRLLMMGAIMDGPIKYPAHGKVAAIRSPDGVMIGLYEPNSWENVT 121          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: A0A1Y1I448_KLENI (VOC domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I448_KLENI)

HSP 1 Score: 129 bits (323), Expect = 3.770e-33
Identity = 68/118 (57.63%), Postives = 82/118 (69.49%), Query Frame = 2
Query:  185 MARARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFETGGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFEPA 538
            MAR R I+L+ RDV RA  FY E GLGL +   SD  AE ++G   L LK     +EA C+ GYSP L FDV D++ TVQR L +GA LDGPIKYP +GKVA++R PDGHM+GL EPA
Sbjct:    1 MARLRYIMLLQRDVPRAAKFYSE-GLGLTVNVCSDRWAELQSGDMKLALKQVD--SEAHCTTGYSPFLHFDVDDLDGTVQRLLSLGAFLDGPIKYPTHGKVAAMRGPDGHMLGLHEPA 115          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: A0A5D6XRH0_9STRA (VOC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRH0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.210e-32
Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 2
Query:  191 RARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFET-GGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFEPAHFD*FT 556
            R R ++++ RDV+R+T F+ E GLGL L  +SD  AEF+T  G  L +K A   NEA CS GYSP L FD  D+  T+ R L +GA +DGPIKYPA+GKVA++RSPDG MIGL+EP  +D  T
Sbjct:    2 RLRQVLILSRDVARSTQFFQE-GLGLKLLRASDTFAEFDTQSGAALCIKLAQ--NEAACSAGYSPFLNFDTQDLSDTIPRLLMLGAIMDGPIKYPAHGKVAAVRSPDGVMIGLYEPNSWDNVT 121          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: D0NG00_PHYIT (VOC domain-containing protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=D0NG00_PHYIT)

HSP 1 Score: 127 bits (319), Expect = 1.750e-32
Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  185 MARARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFET-GGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFEPAHFD*FT 556
            M+R R ++++ RD++R+  FY E GLGL L  SSD  AEF+T  G PL +K A   +EA CS GYSP L FD+ D+   V R L +GA +DGPIKYPA+GKVA+LRSPDG MIGL+EP  ++  T
Sbjct:    1 MSRLRQLMVLSRDLARSKQFYQE-GLGLKLLRSSDTYAEFDTQAGVPLCIKLAQ--SEAACSSGYSPFLNFDIPDLSDAVPRLLMLGAIMDGPIKYPAHGKVAALRSPDGVMIGLYEPNSWENVT 122          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: A0A8K1CQB9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQB9_PYTOL)

HSP 1 Score: 126 bits (317), Expect = 3.350e-32
Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 2
Query:  191 RARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFET-GGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFEPAHFD*FT 556
            R R ++++ RD++R+T FY E GLGL L  SSD  AEF+T    PL +K A   +EA CS GYSP L FD+ D+   V R L +GA +DGPIKYPA+GKVA+LRSPDG MIGL+EP  ++  T
Sbjct:    2 RLRQVLVLSRDLARSTQFYQE-GLGLKLLRSSDTFAEFDTRSSVPLCVKLAQ--SEAACSTGYSPFLNFDIQDLSEAVPRLLMLGAIMDGPIKYPAHGKVAALRSPDGVMIGLYEPNSWENVT 121          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: A0A6A5BKG1_NAEFO (VOC domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BKG1_NAEFO)

HSP 1 Score: 125 bits (315), Expect = 7.420e-32
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = 2
Query:  197 RNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFETGGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFEPA 538
            +NI+L+++DV ++  FY E GLG+ + H S+  AE ++G   + L       EA C+ GYSP LCFDV  M+ T+ + ++MGA LDGPIKYP++GKVASLRSPDGHM+GLFE A
Sbjct:    9 KNIMLLIKDVPKSVKFYSE-GLGMQVNHVSEHWAELQSGQMKVCLNKVE--GEAACTTGYSPFLCFDVTQMDKTIYKLIEMGAVLDGPIKYPSHGKVASLRSPDGHMLGLFEHA 119          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: A0A7S2RR76_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RR76_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.370e-31
Identity = 63/119 (52.94%), Postives = 80/119 (67.23%), Query Frame = 2
Query:  185 MARARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFETG---GTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFE 532
            M R R ++++ RDV     FYG  GLGL +R +SD+ AEF+ G   GT   L+      EA CS GYSP+L FDV DM+S + R + +G  LDGPIKYP +GK+ASLRSP+G MIGLFE
Sbjct:    1 MIRFRRVLVLTRDVGECLNFYGSEGLGLRVRFASDSYAEFDCGDKHGTTFALQKVE--REAECSTGYSPMLHFDVEDMDSLIGRLIMLGGRLDGPIKYPVHGKLASLRSPNGQMIGLFE 117          
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Match: D2UXX0_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UXX0_NAEGR)

HSP 1 Score: 123 bits (308), Expect = 6.810e-31
Identity = 59/116 (50.86%), Postives = 84/116 (72.41%), Query Frame = 2
Query:  185 MARARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFETGGTPLILKAASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGKVASLRSPDGHMIGLFE 532
            +A  +N++L+++DV ++  FY E GLG+ + HS++  AE ++G   + L       EA  + GYSP LCFDV +M+ T+ + L+MGA LDGPIKYP++GKVA+LRSPDGHMIGLFE
Sbjct:    5 IASLKNVMLLIKDVPKSVKFYSE-GLGMTVNHSTEHWAELQSGHMKVCLNKVE--GEASSTTGYSPFLCFDVNEMDKTIYKLLEMGAILDGPIKYPSHGKVAALRSPDGHMIGLFE 117          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6318.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK2_9PHAE4.100e-5171.30VOC domain-containing protein n=1 Tax=Ectocarpus s... [more]
W7TYR3_9STRA1.520e-4665.25VOC domain-containing protein n=1 Tax=Nannochlorop... [more]
K3WVE3_GLOUD1.590e-3355.28VOC domain-containing protein n=1 Tax=Globisporang... [more]
A0A1Y1I448_KLENI3.770e-3357.63VOC domain-containing protein n=1 Tax=Klebsormidiu... [more]
A0A5D6XRH0_9STRA1.210e-3254.47VOC domain-containing protein n=1 Tax=Pythium bras... [more]
D0NG00_PHYIT1.750e-3254.40VOC domain-containing protein n=21 Tax=Peronospora... [more]
A0A8K1CQB9_PYTOL3.350e-3254.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A5BKG1_NAEFO7.420e-3252.63VOC domain-containing protein n=2 Tax=Naegleria Ta... [more]
A0A7S2RR76_9STRA1.370e-3152.94Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
D2UXX0_NAEGR6.810e-3150.86Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6318contigP-wetherbeei_contig6318:140..1448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T008941
PFAMsGlyoxalase
Model size1091
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.46e-37
EggNOG OGs2CF1K@1|root,2RZ76@2759|Eukaryota,1MGY1@121069|Pythiales
DescriptionGlyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Cds size366
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186904.5702937-UTR-P-wetherbeei_contig6318:139..3231683186904.5702937-UTR-P-wetherbeei_contig6318:139..323Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6318 140..323 +
1683186904.6142612-UTR-P-wetherbeei_contig6318:907..14481683186904.6142612-UTR-P-wetherbeei_contig6318:907..1448Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6318 908..1448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186904.5814497-CDS-P-wetherbeei_contig6318:323..3371683186904.5814497-CDS-P-wetherbeei_contig6318:323..337Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6318 324..337 +
1683186904.5915174-CDS-P-wetherbeei_contig6318:434..6081683186904.5915174-CDS-P-wetherbeei_contig6318:434..608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6318 435..608 +
1683186904.604469-CDS-P-wetherbeei_contig6318:729..9071683186904.604469-CDS-P-wetherbeei_contig6318:729..907Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6318 730..907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6318.1.1prot_P-wetherbeei_contig6318.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6318 324..907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6318.1.1

>prot_P-wetherbeei_contig6318.1.1 ID=prot_P-wetherbeei_contig6318.1.1|Name=mRNA_P-wetherbeei_contig6318.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MARARNIILMLRDVSRATGFYGEHGLGLILRHSSDALAEFETGGTPLILK
AASPGNEAVCSVGYSPLLCFDVADMESTVQRCLQMGAHLDGPIKYPAYGK
VASLRSPDGHMIGLFEPAHFD*
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mRNA from alignment at P-wetherbeei_contig6318:140..1448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6318.1.1 ID=mRNA_P-wetherbeei_contig6318.1.1|Name=mRNA_P-wetherbeei_contig6318.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1309bp|location=Sequence derived from alignment at P-wetherbeei_contig6318:140..1448+ (Phaeothamnion wetherbeei SAG_119_79)
GATATTCTTTTTCCTCCGACTATTTCCTTCAGGAAGCGGCCACGAACGCT TCCAAGAACGCACCAGCGATTTTGGCAAGATCAGCTTCGAGCAATCATCT CACGAGTGACCGCATCACCGGAAAGAGCTCAGACAAGAAACAATCTTCGC TCGTATCGTCGAGCGGCGCCAAAATACTACCGCTATGGCGAGGGCGAGGT AAGGAAAAGACTTGGTTCCACTCAAATGTCAACACGAATTGGCGACCTGC GAGGGCTAAGCTGCATCCGGCGTACCATGCCCTTCTTTCTGTCAGGAACA TAATCCTCATGCTCCGGGATGTGAGCCGGGCCACAGGATTTTATGGAGAG CACGGCCTCGGCCTCATCCTACGACACAGCAGTGATGCCCTCGCCGAGTT TGAGACTGGCGGCACGCCTCTCATCCTCAAAGCGGCCTCGCCAGGGAATG AGGCCGTCTGCTCCGTCGGGTAAGCGATGTGGAAAGCCATAGAAAAACGA GACTGTACCCGCAAGCAAGTCCTAAAAAGACTCCATAAAACATCTGGGTT GCGAACGTTCGCTTCTTCACTCGGACTGCGCCCTACACAGGTACTCGCCG CTGCTGTGCTTCGACGTGGCGGATATGGAGTCGACGGTGCAGCGCTGCCT GCAGATGGGCGCTCACCTGGACGGCCCCATCAAGTACCCGGCCTACGGCA AGGTGGCGTCGCTGCGCAGCCCTGACGGCCACATGATCGGCCTTTTTGAA CCCGCGCACTTCGACTGATTCACCGACCGATCGCCTGAGCAGGAAGGGAA ACGGCGGCCGAACGAGCCGATTTCGGCTACTTCTGGCTGTTTCCTGCTCC ATGTCCTGCATTTCTCCAGCCCTGTCCAAGAAGGCTGCGACTCTCCGGCT CAGGCCGAAGGTGCTGACGGCAGGAGAGGTAGGAAGGCGGCGTAACAACG TTGCGGGTTCAAACGGAGCAGGCCTGGCGAGCAGCCGGCGGCAAGAAAAC TCCCAAAGTCCGCACCACGTCCAGCTCGGCTCTGTTTGAAGGCACGGATT GCAGCGCTGTCTCGGCTTGACTCCACGCTCGATGGAGGGTGGCGGCAGCA CGCTGGTACGGGAGCATCGCCTGTGCTACCGCCGCCGCCGCCGCCGTCGC CGCCGTGACAGGGGCCAAAAAGCCAGCACAAACAGCTGCAGCGCTGTAGG CTTGCCTTCGGCATCGGCGCTTTCTGCGCCTTCAACGCTGCTGCCTGGCA CTTGAAACGGCGGCGATGGAGCGGCAGCGCACTGCCGCATCGCGGCGGCC TGCGCCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6318:140..1448+

>mRNA_P-wetherbeei_contig6318.1.1 ID=mRNA_P-wetherbeei_contig6318.1.1|Name=mRNA_P-wetherbeei_contig6318.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig6318:140..1448+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAGGGCGAGGAACATAATCCTCATGCTCCGGGATGTGAGCCGGGC
CACAGGATTTTATGGAGAGCACGGCCTCGGCCTCATCCTACGACACAGCA
GTGATGCCCTCGCCGAGTTTGAGACTGGCGGCACGCCTCTCATCCTCAAA
GCGGCCTCGCCAGGGAATGAGGCCGTCTGCTCCGTCGGGTACTCGCCGCT
GCTGTGCTTCGACGTGGCGGATATGGAGTCGACGGTGCAGCGCTGCCTGC
AGATGGGCGCTCACCTGGACGGCCCCATCAAGTACCCGGCCTACGGCAAG
GTGGCGTCGCTGCGCAGCCCTGACGGCCACATGATCGGCCTTTTTGAACC
CGCGCACTTCGACTGA
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