mRNA_P-wetherbeei_contig6066.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: D7FLF9_ECTSI (Flap endonuclease 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF9_ECTSI) HSP 1 Score: 170 bits (431), Expect = 3.880e-43 Identity = 164/419 (39.14%), Postives = 211/419 (50.36%), Query Frame = 1
Query: 7 GVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQLAAAAMAKAKQAKAIKAKQATKIAAAKVEDGDGGGKADGXXXXXXXXXXXXXXXXXXXXXXXXXXALEAAAPADGAEAVKMEEXXXXXXXXXXXXXGETGKAGDDAIAVDEEATRAPRVATVLEETAAPKGEAAAAVPAAEIATDMKAEPEKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVELIPMYQEARRIFLEPEVYAPSSFDLKWTDPDEEGLTEFLVTKMGFNADRVASGIKRLKDARKLTGQRRMDSFFKPVEAPGGSSSGAKRKPVLEPKGKSKGPA 1263
GVVYGTATEDMDALTFQTPKLLR+ S + +++V LLQGL ++ E+FVD+C+LCGCDYT S++GIGPKKAL ++Q+G+IE+++KHLD KYPVP+ W + A++A+ K XXXXXXXXXXXXXXXXXXXX E A P EAV E+ K GD D + +A + + EAA E T+ AE E+E + PMY++AR +FL+PEV + LKWTDPDE GL +FLV + GFNA+RVASGI +LK ARK Q+RMDSFF + P ++GAK KP + K +KG A
Sbjct: 174 GVVYGTATEDMDALTFQTPKLLRRMTFSGSNQPILEVDYQ-------KLLQGLELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDW------------LEPAERAERRK-----------------------------XXXXXXXXXXXXXXXXXXXXXAETANP----EAVSEEDVQQ--------------KEGDS----DSDKAKAD----TPDHGVSVAKEAADVSAKRERETEDAAESEQEMD-------------------------------------------DTPPMYRQARGLFLKPEVEPAGEYKLKWTDPDEPGLIKFLVEEKGFNAERVASGIVKLKGARKNVSQKRMDSFFSVIPNP---NAGAK-KPAPKAKAGAKGKA 471
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: A0A835Z748_9STRA (Flap endonuclease 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z748_9STRA) HSP 1 Score: 164 bits (416), Expect = 4.640e-41 Identity = 168/414 (40.58%), Postives = 209/414 (50.48%), Query Frame = 1
Query: 7 GVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQLAAAAMAKAKQAKAIKAKQATKIAAAKVEDGDGGGKADGXXXXXXXXXXXXXXXXXXXXXXXXXXALEAAAPADGAEAVKMEEXXXXXXXXXXXXXGETGKAGDDAIAVDEEATRAPRVATVLEETAAPKGEAAAAVPAAEIATDMKAEPEKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVELIPMYQEARRIFLEPEVYAPSSFDLKWTDPDEEGLTEFLVTKMGFNADRVASGIKRLKDARKLTGQRRMDSFFKPVEAPGGSSSGAKRKPVLEPKGK 1248
GVV+GT TEDMDALTF+TPKL+R+ + P+ + +L+GLG+T E+FVD+CILCGCDYTDS+RGIGPKKAL IK++ SIE++LKHLD+ K+ +P W I + T +A K XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX P A V++E AVPA + IPMY+EARR+FLEP+V+ +++DLKWTDP+ E LT FLV KM FNA+RVA+GIK+LK+ARK GQ RMD+FFK P G+ G KR ++ GK
Sbjct: 175 GVVFGTGTEDMDALTFRTPKLIRRLTTNKNQ--------PIMEVDYAGVLEGLGLTHEEFVDMCILCGCDYTDSIRGIGPKKALMLIKKHHSIEEILKHLDRSKHGIPADW---------------------IPGETPTPLA-----------KPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------PPAAPVVQE----------AVPA-----------------------------------------------------------DKIPMYKEARRLFLEPDVFPANTYDLKWTDPNVEELTTFLVEKMQFNAERVAAGIKKLKEARKKGGQTRMDTFFKSTAPPPGTKVGVKRPAEVKKGGK 457
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: A0A7S2SD31_9STRA (Flap endonuclease 1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD31_9STRA) HSP 1 Score: 152 bits (385), Expect = 9.080e-37 Identity = 148/431 (34.34%), Postives = 191/431 (44.32%), Query Frame = 1
Query: 1 QAGVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQLAAAAMAKAKQAKAIKAKQATKIAAAKVEDGDGGGKADGXXXXXXXXXXXXXXXXXXXXXXXXXXALEAAAPADGAEAVKMEEXXXXXXXXXXXXXGETGKAGDDAIAVDEEATRAPRVATVLEETAAPKGEAAAAVPAAEIATDMKAEPEKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVELIPMYQEARRIFLEPEVYAPSSFDLKWTDPDEEGLTEFLVTKMGFNADRVASGIKRLKDARKLTGQRRMDSFFKPVEAPGGSSSGAKRKPVLEPKGKSKGPATKKGKTTGGK 1293
+AG+V+ TATEDMDALTFQTP LL++ S K P+ ++ LL GLGITQEQFVD+CILCGCDY D GIGPK AL +++YG++E ++K+LDK K+P+P W+ + K PAD A A XXXXXXXXXXXX G + +E T A E A P+ PAA T EPEKE+ P++ E R++F P V P + LKWT+PDEEGL +FLV + GFNA+RV+SGIK+LK+ + Q+RMDSFFK G S +KRK +K +KKGK + GK
Sbjct: 195 KAGLVWATATEDMDALTFQTPHLLKRMTFSA------KQQAPIMQISHDKLLHGLGITQEQFVDLCILCGCDYCDRPSGIGPKTALKLVRKYGNLENIVKNLDKKKHPLPVGWERPAPK------------------------------------------------------------------------PADPAPAAXXXXXXXXXXXXXXXX-----SEGGSEVTHEENETDAQ------EPDAKPE-------PAASAETAQ--EPEKEQPWE--------------------------------------------PLFVEVRQLFHTPLVQDPVNCSLKWTEPDEEGLIKFLVEEKGFNAERVSSGIKKLKEMKGKGTQQRMDSFFKST----GMVSSSKRKAAP-----AKAKPSKKGKISKGK 474
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: W7U4Z8_9STRA (Flap endonuclease 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4Z8_9STRA) HSP 1 Score: 141 bits (356), Expect = 6.960e-33 Identity = 127/402 (31.59%), Postives = 171/402 (42.54%), Query Frame = 1
Query: 7 GVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQLAAAAMAKAKQAKAIKAKQATKIAAAKVEDGDGGGKADGXXXXXXXXXXXXXXXXXXXXXXXXXXALEAAAPADGAEAVKMEEXXXXXXXXXXXXXGETGKAGDDAIAVDEEATRAPRVATVLEETAAPKGEAAAAVPAAEIATDMKAEPEKE-EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVELIPMYQEARRIFLEPEVYAPSSFDLKWTDPDEEGLTEFLVTKMGFNADRVASGIKRLKDARKLTGQRRMDSFFKPVEAPGGSSS 1209
G VY ATED D LTF TP+LLR M S + ++ +L+GLG+T QF+D+CIL GCDYT ++RGIGPK AL IK+YG IE +L+++ KGKY VP W + + K K + + + VE+GD A P D A K E KAG + ++E +G AAA+ A E+A D EP K EG EV +P Y AR +F++PE++ P+ + KW +P+E GL FL+ +GFN DRV SGI +LK +R Q+R+DSFFKP GSSS
Sbjct: 175 GKVYAVATEDTDTLTFATPRLLRN-MTSAGDNPIKEIDYK-------KMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEW------------LPRIKVRKPSSLPPSAPPSVSPVEEGD------------------------------------KAMPGD-ENACKTAEVDS--------------KAGMEG---EKE-----------------EGIKAAAIVAREVAPD---EPAKSVEG-----------------------------------------EVMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPS----GSSS 437
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: A0A451ESR9_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Afromicracis pennata TaxID=2713339 RepID=A0A451ESR9_9CUCU) HSP 1 Score: 121 bits (303), Expect = 7.620e-29 Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 1 QAGVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQL 363
+AG ++GTATEDMDALTF + +LR S A +P+ + +LQ L +TQ +F+D+CIL GCDYTDS+RGIGPKK++ IK + +IE +LKHLDK KYP PE+W+ E +QL
Sbjct: 2 KAGKIFGTATEDMDALTFGSNIVLRHLTFSEARK------MPIQEIHLKTVLQELNLTQNEFIDLCILMGCDYTDSIRGIGPKKSIELIKNHRNIETILKHLDKDKYPPPENWNFEGARQL 116
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: A0A1C8V7E6_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Triozastus marshalli TaxID=1689898 RepID=A0A1C8V7E6_9CUCU) HSP 1 Score: 121 bits (303), Expect = 8.830e-29 Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 1
Query: 1 QAGVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQL 363
+ G VY TATEDMDALTF + +LR S A +P+ + +L+GL ++ +QFVD+CIL GCDYTDS++GIGPKK++ IK++ SIE++LKHLDK KYP PE+W+ E+ ++L
Sbjct: 7 KGGKVYATATEDMDALTFGSNVVLRHMTYSEARK------MPIHEIHLSKVLEGLQLSHQQFVDLCILMGCDYTDSIKGIGPKKSIELIKKHSSIEEILKHLDKEKYPPPENWNYENARKL 121
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: A0A3Q9JQH2_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Curculionidae gen. sp. CoMim02 TaxID=2174889 RepID=A0A3Q9JQH2_9CUCU) HSP 1 Score: 120 bits (300), Expect = 1.760e-28 Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 1 QAGVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQL 363
+AG ++ TATEDMDALTF + LLR S A +P+ + +LQ L +TQ++F+D+CIL GCDYTDS+RGIGPKK++ +IK+Y SIE++LKH+DK KYP PE W+ + L
Sbjct: 3 RAGKIFATATEDMDALTFGSDVLLRHLTFSEARK------MPIQEIHLKIVLQELDLTQKEFIDLCILMGCDYTDSIRGIGPKKSIEYIKKYKSIEEILKHIDKXKYPPPEDWNFAGARAL 117
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: A0A3S9XJU6_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Phloeotribus scarabaeoides TaxID=479299 RepID=A0A3S9XJU6_9CUCU) HSP 1 Score: 119 bits (298), Expect = 3.760e-28 Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 1 QAGVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQL 363
+AG +Y TATEDMDALTF + LLR S A +P+ + +LQ LG+ Q++F+D+CIL GCDYT S+RGIGPKKA++ I+ + SIE +L H+DK KYP PE+WD +QL
Sbjct: 2 KAGKIYATATEDMDALTFGSDILLRHLTFSEARK------MPIQEIHLKTVLQALGLNQKEFIDLCILMGCDYTGSIRGIGPKKAIDLIQSHRSIENILDHIDKDKYPPPENWDFSGARQL 116
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: A0A1C8V7D7_9CUCU (Flap endonuclease 1 (Fragment) n=1 Tax=Brentidae gen. sp. DP-2016 TaxID=1843172 RepID=A0A1C8V7D7_9CUCU) HSP 1 Score: 117 bits (293), Expect = 2.140e-27 Identity = 61/121 (50.41%), Postives = 87/121 (71.90%), Query Frame = 1
Query: 1 QAGVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQL 363
+AG VY TATEDMDALTF + +LR+ +S A IP+ + +L+GL I++EQFVD+CIL GCDYTDS+RGIGPKK++ I+Q+ SIE++L +DK K+P PE+W+ + ++L
Sbjct: 7 KAGKVYATATEDMDALTFGSNVVLRKLTLSEAKK------IPIQEIHLNKVLEGLEISKEQFVDLCILMGCDYTDSIRGIGPKKSIELIRQHKSIEEILNRIDKEKFPPPENWNYKGAREL 121
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Match: A0A1I8FWP4_9PLAT (Flap endonuclease 1 n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8FWP4_9PLAT) HSP 1 Score: 121 bits (304), Expect = 2.190e-27 Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 1 QAGVVYGTATEDMDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFVDICILCGCDYTDSVRGIGPKKALNFIKQYGSIEKMLKHLDKGKYPVPESWDLESLKQL 363
++G V+ TEDMDALTF P LLR+ S A K+ I FRL LQ + ++QEQFVD+CIL GCDY DSVRG+GPKKAL F+++YG I+ +LKHLDK KY VPE+W + ++L
Sbjct: 52 RSGRVFAVGTEDMDALTFGAPVLLRRLTFSEAK----KMPIQEFRLDKA--LQEMSMSQEQFVDLCILLGCDYCDSVRGVGPKKALEFLRKYGDIDNVLKHLDKDKYQVPENWQYQEARRL 166 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6066.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6066.1.2 >prot_P-wetherbeei_contig6066.1.2 ID=prot_P-wetherbeei_contig6066.1.2|Name=mRNA_P-wetherbeei_contig6066.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=429bp MDALTFQTPKLLRQEMVSLAAFDLIKVFIPLFRLLPCALLQGLGITQEQFback to top mRNA from alignment at P-wetherbeei_contig6066:1..3414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6066.1.2 ID=mRNA_P-wetherbeei_contig6066.1.2|Name=mRNA_P-wetherbeei_contig6066.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3414bp|location=Sequence derived from alignment at P-wetherbeei_contig6066:1..3414+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6066:1..3414+ >mRNA_P-wetherbeei_contig6066.1.2 ID=mRNA_P-wetherbeei_contig6066.1.2|Name=mRNA_P-wetherbeei_contig6066.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1287bp|location=Sequence derived from alignment at P-wetherbeei_contig6066:1..3414+ (Phaeothamnion wetherbeei SAG_119_79)back to top |