mRNA_P-wetherbeei_contig603.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig603.1.1
Unique NamemRNA_P-wetherbeei_contig603.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5KBP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP1_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.560e-13
Identity = 53/148 (35.81%), Postives = 75/148 (50.68%), Query Frame = 2
Query:   29 RRLAWQYIRDVAVHERQFKTDYRLSPVHFDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQRRSRASLAFRGCVSAVVRCLF 463
            +RL W            ++  YR+    F  LV++LRPSLE+NA  G LR    G +  E ++   LR LAGG Y D+    G+++   +D I+W+VIDAIN    +     P+ EE C R A  F+ +S   +     V A V CLF
Sbjct:  110 KRLPWAQHEADLDKRHGWRRSYRMEKGSFHKLVELLRPSLEVNAFFGALRSPTNGAIAVEVRVAAALRILAGGSYWDVALMFGLSRAVTFD-ILWQVIDAINETPAIGAFDFPLTEEGCMRNANRFKEKSTDGIF--SWVVAAVDCLF 254          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5KUP3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.110e-12
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 2
Query:   29 RRLAW-QYIRDVAVHERQFKTDYRLSPVHFDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQRRS 409
            +RL W Q+  D+   + + +  YR+    F  LV++LRPSL +NA  G LR    G +  E ++ + LR LAG RY D+    G++  T Y  I+W VIDAIN    +     P+ EE C R A  F+++S
Sbjct:   23 KRLPWAQHEADLDKRQGR-RRSYRMEKASFHKLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGARYWDVALMFGLSVPTTYQ-ILWSVIDAINKTPAVGAFDFPLTEEGCMRNANRFKKKS 151          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5JT08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT08_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-10
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 2
Query:   29 RRLAWQYIRDVAVHERQ-FKTDYRLSPVHFDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQRRS 409
            +RL W    +  + +RQ ++  YR+    F  LV++LRPSL +NA  G LR    G +  E ++ + LR LAG  Y D+    G++  T Y  I+W VIDAIN    +     P+ EE C R A  F+ +S
Sbjct:  249 KRLPWAQ-HEADLDKRQGWRRSYRMVKASFHRLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQ-ILWSVIDAINKTPAVGAFDFPLTEEGCMRNANRFKEKS 377          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5K347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K347_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.260e-10
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  113 FDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQ 400
            FD LV++LRPSL +NA  G LR    G +  E ++ + LR LAG  Y D+    G++  T Y  I+W VIDAIN    +     P+ EE C R A  F+
Sbjct:    6 FDKLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQ-ILWSVIDAINKTPAVGAFDFPLTEEGCMRNANRFK 103          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5JMK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.290e-9
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  113 FDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQRRS 409
            F  LV++LRPSLE+NA  G LR    G +  E ++ + LR LAG  Y D+    G++    Y  I+W VIDAIN+   +     P+ EE C R A  F+ +S
Sbjct:    6 FHKLVELLRPSLEVNAFFGALRSPRNGAIAVEVRVAVALRILAGASYWDVTLMFGLSVPVTYQ-ILWEVIDAINNTPAVGACDPPLTEEGCMRNANRFKEKS 106          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5JEM6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.820e-9
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  113 FDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQRRS 409
            F  LV++LRPSLE+NA  G LR    G +  E ++ + LR LAG  Y D+    G++    Y  I+W VIDAIN+   +     P+ EE C R A  F+ +S
Sbjct:    6 FHKLVELLRPSLEVNAFFGALRSPRNGAISVEVRVAVALRILAGASYWDVLVMFGLSVAVTYQ-ILWEVIDAINNTPAVGAFDFPLTEEGCMRNANRFKDKS 106          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.040e-8
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  122 LVQILRPSLELNAKMGDLRGGFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQRRSRASLAFRGCVSA 445
            LV  LRP+L+ N +MG LR G +  E+Q+ +TLR+LAGG   +  + H IA++T Y  +   VI+A+N+   L     P GE D ARAA  F+ RS   +  R CV A
Sbjct:   73 LVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYH-VTSTVINALNACPELNCKW-PEGE-DAARAAELFRNRSSMDVV-RKCVGA 176          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5KJ06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ06_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.940e-7
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 2
Query:   29 RRLAWQYIRDVAVHERQFKTDYRLSPVHFDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINS 328
            +RL W          R ++  YR+    F  LV++LRPSLE+NA  G LR      +  E ++ + LR LAG  Y D+    G++    Y  I+W VIDAIN+
Sbjct:   75 KRLPWAQHEADLDKRRGWRRSYRVEEGSFHKLVELLRPSLEVNAFFGALRSPRNDAIAVEVRVAVALRILAGASYWDVLLMFGLSVAVTYQ-ILWEVIDAINN 176          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5JLV6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV6_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.440e-7
Identity = 43/130 (33.08%), Postives = 62/130 (47.69%), Query Frame = 2
Query:   29 RRLAWQYIRDVAVHERQFKTDYRLSPVHFDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQRRS 409
            +RL W            ++  YR+    F  LV++LRPSL++NA  G LR    G +  E ++ + LR L     +DI    G++    Y  I+W VIDAIN+   +     P+ EE C R A  F   S
Sbjct:   45 KRLPWAQHEADLDQRHGWRRSYRMEKGSFHKLVELLRPSLDVNAFFGALRSPRNGAIAVEVRVAVALRILDRASCRDITLMFGLSVPVTYQ-ILWEVIDAINNTPAVGAFDFPLTEEGCMRNAFRFMDTS 173          
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Match: A0A6H5JZ30_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ30_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.450e-7
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 2
Query:  113 FDHLVQILRPSLELNAKMGDLRG---GFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVIDAINSADVLRLPGLPVGEEDCARAAAGFQRRS 409
            F  LV++LRPSL +NA  G LR    G +  E ++ + LR LAG  Y D+    G++  T +  I+  VID+IN    +     P+ EE C R A  F+++S
Sbjct:    6 FHKLVELLRPSLAVNAFFGVLRSAINGAIAEEVRVAVALRILAGASYWDVALMFGLSVPTTFQ-ILRSVIDSINKTPAVGAFDFPLTEEGCMRNANRFKKKS 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig603.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KBP1_9PHAE5.560e-1335.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP3_9PHAE4.110e-1237.40DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JT08_9PHAE1.410e-1036.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K347_9PHAE2.260e-1041.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK6_9PHAE2.290e-940.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEM6_9PHAE2.820e-940.20DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5L6B6_9PHAE6.040e-842.59DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KJ06_9PHAE1.940e-736.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLV6_9PHAE3.440e-733.08DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZ30_9PHAE4.450e-737.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig603contigP-wetherbeei_contig603:4584..5575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI46469
PFAMsDDE_Tnp_4
Model size992
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.28e-05
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size399
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186883.9937296-UTR-P-wetherbeei_contig603:4583..47461683186883.9937296-UTR-P-wetherbeei_contig603:4583..4746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig603 4584..4746 +
1683186884.0111823-UTR-P-wetherbeei_contig603:5145..55751683186884.0111823-UTR-P-wetherbeei_contig603:5145..5575Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig603 5146..5575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.0031743-CDS-P-wetherbeei_contig603:4746..51451683186884.0031743-CDS-P-wetherbeei_contig603:4746..5145Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig603 4747..5145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig603.1.1prot_P-wetherbeei_contig603.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig603 4747..5145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig603.1.1

>prot_P-wetherbeei_contig603.1.1 ID=prot_P-wetherbeei_contig603.1.1|Name=mRNA_P-wetherbeei_contig603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MGDLRGGFVKPENQLMITLRYLAGGRYQDIKNHHGIAKTTFYDDIVWRVI
DAINSADVLRLPGLPVGEEDCARAAAGFQRRSRASLAFRGCVSAVVRCLF
SQSLNFKLLLWILRRKASLRLFCTPLSLRARS*
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mRNA from alignment at P-wetherbeei_contig603:4584..5575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig603.1.1 ID=mRNA_P-wetherbeei_contig603.1.1|Name=mRNA_P-wetherbeei_contig603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=992bp|location=Sequence derived from alignment at P-wetherbeei_contig603:4584..5575+ (Phaeothamnion wetherbeei SAG_119_79)
TGGAACCCGCGAGCGCGGCCCTGCACGGAGGAGGCTCGCTTGGCAGTACA TTCGCGATGTTGCCGTCCATGAGAGGCAGTTTAAAACGGATTATCGGCTT TCTCCAGTGCACTTTGATCATCTCGTGCAGATCTTACGGCCGAGCTTGGA GCTTAACGCGAAAATGGGCGATCTTCGGGGGGGCTTTGTCAAACCTGAGA ACCAACTGATGATCACCCTACGCTACCTAGCCGGAGGGAGGTATCAAGAT ATCAAAAATCACCACGGCATCGCTAAGACTACATTTTACGACGACATCGT TTGGCGCGTTATTGATGCCATCAACTCCGCGGATGTTTTGAGACTCCCAG GCCTGCCGGTTGGAGAGGAAGACTGCGCGCGAGCTGCAGCCGGATTCCAG CGTCGGAGCCGAGCTAGCCTTGCATTCAGAGGATGCGTCTCCGCCGTGGT AAGATGTCTGTTTTCGCAAAGTTTGAATTTCAAGCTGCTGCTCTGGATCC TGCGACGCAAGGCTTCACTCCGCCTATTTTGCACCCCCTTGTCTCTTCGT GCACGATCTTAACTTGCTCAGCCTGCCTCTAATTTCCTGTTCGCGATTGC AAGCAGGATGGTCTCCTTGTACGGATCAAAAGCCCCTCTGAATTGGATAC GTTGAACGTCAAGCGCTATTATTCGGGGCACAAGTGCGGCTTCGGCATCA ACTTGCAGGTAAGAGTGGCGCCCGCCTTATTACCCCGTTTTGTGTTTGAT GTCCTAGATGGGGAACACGTTGCTCTCTCCTTCGTCGTGGTGTTTCCTGT TCGTTGTATCTTACTCTGTGCTGTCATATGTCCTCAGCTTTGGCTGCAAG CTGCCGCCTCTTGACGACCTGTCGCCGTTATTTGCTCTTCACCTGCAACC TCACGTTCCGTAGGGCTGTGTGGATGCTGACTGCATGTTCCAAACCGCCT CGTTCAACACGCCGGGGAGCACAAATGACTGGAATGCGTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig603:4584..5575+

>mRNA_P-wetherbeei_contig603.1.1 ID=mRNA_P-wetherbeei_contig603.1.1|Name=mRNA_P-wetherbeei_contig603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig603:4584..5575+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGATCTTCGGGGGGGCTTTGTCAAACCTGAGAACCAACTGATGAT
CACCCTACGCTACCTAGCCGGAGGGAGGTATCAAGATATCAAAAATCACC
ACGGCATCGCTAAGACTACATTTTACGACGACATCGTTTGGCGCGTTATT
GATGCCATCAACTCCGCGGATGTTTTGAGACTCCCAGGCCTGCCGGTTGG
AGAGGAAGACTGCGCGCGAGCTGCAGCCGGATTCCAGCGTCGGAGCCGAG
CTAGCCTTGCATTCAGAGGATGCGTCTCCGCCGTGGTAAGATGTCTGTTT
TCGCAAAGTTTGAATTTCAAGCTGCTGCTCTGGATCCTGCGACGCAAGGC
TTCACTCCGCCTATTTTGCACCCCCTTGTCTCTTCGTGCACGATCTTAA
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