mRNA_P-wetherbeei_contig5975.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: A0A836CLD5_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD5_9STRA) HSP 1 Score: 240 bits (613), Expect = 1.370e-71 Identity = 114/172 (66.28%), Postives = 138/172 (80.23%), Query Frame = 1
Query: 1 TMADFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADALLQSKWEEARRAKQTATGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVELEQYGNVKFDAKRDRWQGYHPDQHKEVVERFQRIDD 516
++ DFK+RKQI + R +GQ+ PE D TG+MINPHNP+FI+KRPWYLGDSGPSL HHSKQ++ + LSMK+AD ++Q+KW A++A A FR GAC NCGAMGHKT ECVERPRS K+AAWKTG+ A DD V LE YG + FDAKRDRW GYHPDQHKEVVERF ++D+
Sbjct: 2 SVTDFKKRKQIEQARMSGQLAPETDTETGKMINPHNPDFISKRPWYLGDSGPSLKHHSKQKSDHVLSMKEADMIVQTKW--AKKA-DAAVKFRPGACKNCGAMGHKTTECVERPRSTKRAAWKTGVATATDDTVVSLEAYGKLNFDAKRDRWHGYHPDQHKEVVERFNKLDE 170
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: D7FU41_ECTSI (Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU41_ECTSI) HSP 1 Score: 238 bits (608), Expect = 1.220e-70 Identity = 112/170 (65.88%), Postives = 134/170 (78.82%), Query Frame = 1
Query: 4 MADFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADALLQSKWEEARRAKQTATGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVELEQYGNVKFDAKRDRWQGYHPDQHKEVVERFQRID 513
MA KQ +Q+ + R+AGQIEPE D TG+MINPHNPEFITKRPWYLG+SGPSL HHSKQ+ L+MK AD L+Q +W ++A ATG+RKGAC NCGAMGHK +ECVERPRS KKAA KTG+DIA DD++ +L +G V FDAKRDRW GYHPD+HK +ERF +ID
Sbjct: 1 MASRKQERQLQQAREAGQIEPEMDTETGKMINPHNPEFITKRPWYLGESGPSLVHHSKQKVDAVLTMKKADELVQQRWATKKKA---ATGYRKGACKNCGAMGHKASECVERPRSGKKAAMKTGMDIAADDVQTDLTSHGKVSFDAKRDRWLGYHPDEHKHTIERFNKID 167
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: A0A7S1UCF0_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCF0_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.780e-51 Identity = 89/173 (51.45%), Postives = 130/173 (75.14%), Query Frame = 1
Query: 1 TMADFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADALLQSKWEEARRAK-QTATGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVELEQYGNVKFDAKRDRWQGYHPDQHKEVV-ERFQRID 513
+MA+ +Q ++IAE RQAG + PE D G+M+NPHNPE+ITKRPWYLG+ G + HH+KQ+ + LS+ +AD L+ + E++R K Q A G+RKGAC NCG+M HK +C+ERPRS K +A +GLDIA DD+ V+LEQ+G + FDAKRD +QG+ D H++++ E+F++++
Sbjct: 7 SMAERRQNRKIAEARQAGTLAPETDED-GRMVNPHNPEYITKRPWYLGEGG-GIKHHAKQKQTHLLSLVEADELVNAARVESKRKKRQRAAGYRKGACQNCGSMTHKAKDCLERPRSKKTSARHSGLDIAADDVTVDLEQHGKLAFDAKRDGYQGFDVDHHQKLLREKFEKLE 177
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: A0A7S2V1R9_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1R9_9STRA) HSP 1 Score: 178 bits (451), Expect = 2.220e-50 Identity = 89/150 (59.33%), Postives = 110/150 (73.33%), Query Frame = 1
Query: 64 PEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADALLQSKWEEARRAKQTATGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVELEQYGNVKFDAKRDRWQGYHPDQHKEVVERFQRID 513
PE D +G+MINPHNPE+ITKRPWYLG SGPSL HHS Q+ LSM +ADAL+ K + R+ + AT +RKGAC NCGAMGHK ECVERPRS+K AA +GLDIAPD V+L ++G + +DAKRD W GY +Q K V+ERF ++
Sbjct: 1 PEIDEESGKMINPHNPEYITKRPWYLGSSGPSLKHHSLQKINRLLSMHEADALI--KEGKTRKGFKAAT-YRKGACTNCGAMGHKARECVERPRSDKLAAKNSGLDIAPDQEVVDLTKFGKLSYDAKRDHWHGYSAEQQKMVIERFNLME 147
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: A0A7R9U7Z6_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Z6_9STRA) HSP 1 Score: 175 bits (443), Expect = 9.330e-48 Identity = 85/173 (49.13%), Postives = 128/173 (73.99%), Query Frame = 1
Query: 1 TMADFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADALLQSKWEEARRAK-QTATGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVELEQYGNVKFDAKRDRWQGYHPDQHKEVVE-RFQRID 513
TMA+ ++++IAE RQAG + PE D G+M+NPHNPE+ITKRPWYLG+ G + HH KQ+ + LS+ +A+ L+Q +A++ K Q A GFRKGAC NCG++ H +C+ERPR+ K AAWKTGLDIA DD++V+LE +G + +DAKRD ++G+ + H++++ ++ R++
Sbjct: 7 TMAERNKKRKIAEARQAGTLAPEVD-DEGRMVNPHNPEYITKRPWYLGEGG-GIKHHQKQKVTHFLSLNEAEELVQDARRQAKQNKRQRALGFRKGACRNCGSLSHTEKDCLERPRAAKSAAWKTGLDIANDDVQVDLETHGKLAYDAKRDSYRGFDVEHHQKLLRMKYDRLE 177
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: A0A7S3HC70_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC70_9STRA) HSP 1 Score: 176 bits (445), Expect = 3.210e-47 Identity = 80/154 (51.95%), Postives = 118/154 (76.62%), Query Frame = 1
Query: 61 EPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADALLQSKWEEARRAKQTA--TGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVELEQYGNVKFDAKRDRWQGYHPDQHKEVVERFQRIDD 516
EP+ D G+MINPHNP+FITK PWYLG+SGP+L HH+ Q+A + LS+ ++DAL++ K + + Q A T +RKGAC NCGAM H +CVERPRS KK+AWK+GLDIA D++ ++LE +G V +DAKRD+W+GY P +++ ++++ +R+++
Sbjct: 5 EPKLDQD-GKMINPHNPDFITKVPWYLGNSGPTLKHHAVQKADHFLSLTESDALIEQKLAARKASVQAAPKTSYRKGACKNCGAMSHNEKDCVERPRSTKKSAWKSGLDIAADEVTMKLEDHGKVSYDAKRDQWKGYDPVEYQTIIDKHERLEE 157
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: A0A484DY55_BRELC (Pre-mRNA-splicing factor SLU7 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY55_BRELC) HSP 1 Score: 175 bits (443), Expect = 5.270e-47 Identity = 92/176 (52.27%), Postives = 122/176 (69.32%), Query Frame = 1
Query: 10 DFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADALLQSKWEEARRAKQTATG------FRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVEL--EQYGNVKFDAKRDRWQGYHPDQHKEVVERFQRID 513
DFK++++I E R+ G + PEQD G +INPHNPEFI+KRPWYLGDSGPSL H + Q A LS+ +AD L + + R+A+ TG +RKGAC NCGAM HKT ECVERPR K AWKT +D+ D++ V++ E++G + FDAKRD+W GY P H + VER+++ID
Sbjct: 13 DFKKKREIEEARKNGILPPEQDAE-GNLINPHNPEFISKRPWYLGDSGPSLNHQTLQHQARLLSINEADEL----YIKGRKAQSLITGIARKRKWRKGACKNCGAMSHKTNECVERPR--KIGAWKTNMDLKKDEVVVDVRSEKFGKLTFDAKRDQWLGYDPKDHLKTVERYEKID 181
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: W2PIB2_PHYPN (Pre-mRNA-splicing factor SLU7 n=12 Tax=Phytophthora TaxID=4783 RepID=W2PIB2_PHYPN) HSP 1 Score: 174 bits (441), Expect = 1.030e-46 Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 1
Query: 7 ADFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADALLQS--KWEEARRAKQTATGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVEL--EQYGNVKFDAKRDRWQGYHPDQHKEVVERFQRID 513
+DFK++++I E R+ G + PEQD G +INPHNPE+I+KRPWYLGDSGPSL H + Q A+ LS+ +AD L K + A + +RKGAC NCGAM HKT ECVERPR K AWKT D+ DDM V++ E++G + FDAKRD+W GY P H + VER++++D
Sbjct: 12 SDFKKKREIEEARKNGTLPPEQDAD-GNLINPHNPEYISKRPWYLGDSGPSLKHQTLQHQAHLLSIHEADELYLKGRKQQAAASSAGRQRKWRKGACKNCGAMSHKTNECVERPR--KVGAWKTNKDLKSDDMVVDVRSEKFGKLAFDAKRDQWLGYDPKDHSKTVERYEKVD 181
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: K3X5L6_GLOUD (Pre-mRNA-splicing factor SLU7 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5L6_GLOUD) HSP 1 Score: 174 bits (441), Expect = 1.120e-46 Identity = 91/175 (52.00%), Postives = 125/175 (71.43%), Query Frame = 1
Query: 7 ADFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADAL-LQSKWEEARR--AKQTATGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVEL--EQYGNVKFDAKRDRWQGYHPDQHKEVVERFQRIDD 516
+DFK+++++ E R+ G + PEQD G +INPHNPEFITKRPWYLGDSGPSL H S Q ++ LS+ +AD L L+ K +A+ A++ T +RKGAC NCGAM HKT ECVERPR K AWK+ DI D++ V++ +Q+G + FDAKRD+W GY P +H + + R+ +ID+
Sbjct: 12 SDFKKKRELEEARKNGTLPPEQDAE-GNLINPHNPEFITKRPWYLGDSGPSLKHQSVQNQSHLLSIHEADELYLRGKKVKAQSSAAERKPTKWRKGACKNCGAMSHKTHECVERPR--KVGAWKSNKDIKGDEVLVDVRSQQFGKLAFDAKRDQWLGYDPKEHTKTIARYDKIDE 183
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Match: H3G9I3_PHYRM (Pre-mRNA-splicing factor SLU7 n=6 Tax=Phytophthora TaxID=4783 RepID=H3G9I3_PHYRM) HSP 1 Score: 173 bits (439), Expect = 1.870e-46 Identity = 88/173 (50.87%), Postives = 125/173 (72.25%), Query Frame = 1
Query: 7 ADFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGPSLTHHSKQQAANELSMKDADAL-LQSKWEEARRAKQTATGFRKGACANCGAMGHKTAECVERPRSNKKAAWKTGLDIAPDDMRVEL--EQYGNVKFDAKRDRWQGYHPDQHKEVVERFQRIDD 516
+DFK++++I E R+ G + PEQD G +INPHNPEFI+KRPWYLGDSGPSL H + Q A+ LS+++AD L ++ + + A+Q +RKGAC NCGAM HKT ECVERPR K AWKT D+ D++ V++ E++G + FDAKRD+W GY P +H + +ER++++D+
Sbjct: 12 SDFKKKQEIEEARKNGTLPPEQDAD-GNLINPHNPEFISKRPWYLGDSGPSLKHQTLQHQAHLLSIQEADELYIKGRKQLTTTARQRK--WRKGACKNCGAMSHKTNECVERPR--KVGAWKTNKDLQSDEVVVDVRSEKFGKLAFDAKRDQWLGYDPKEHAKTIERYEKVDE 179 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5975.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5975.3.1 >prot_P-wetherbeei_contig5975.3.1 ID=prot_P-wetherbeei_contig5975.3.1|Name=mRNA_P-wetherbeei_contig5975.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp MADFKQRKQIAEKRQAGQIEPEQDVSTGQMINPHNPEFITKRPWYLGDSGback to top mRNA from alignment at P-wetherbeei_contig5975:2753..3598+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5975.3.1 ID=mRNA_P-wetherbeei_contig5975.3.1|Name=mRNA_P-wetherbeei_contig5975.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig5975:2753..3598+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5975:2753..3598+ >mRNA_P-wetherbeei_contig5975.3.1 ID=mRNA_P-wetherbeei_contig5975.3.1|Name=mRNA_P-wetherbeei_contig5975.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig5975:2753..3598+ (Phaeothamnion wetherbeei SAG_119_79)back to top |