mRNA_P-wetherbeei_contig5954.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5954.2.1
Unique NamemRNA_P-wetherbeei_contig5954.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5954.2.1 vs. uniprot
Match: A0A6H5L1V5_9PHAE (BTP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.350e-16
Identity = 80/255 (31.37%), Postives = 111/255 (43.53%), Query Frame = 1 
Query:  268 DGESDG--FARRITAQAVARACLALDIIEAPPLAIAAVTDATASFIDRVGAFAKAAAEAGGRVEPNLTDFLAAFQMLSPPIRWQDIRYFA---------------EGDEATHP---------------------WQQPFHHAVPNFPVRKRRRVEEARAVSGLGAPSSPGPGSTTPGSDDACELPRPPHVPAFMPPLPPLQTFRSTPVPSLGPPPSHQLMRQERIKRSAQAKEALQRILVGNEAQGSSAGRSSLG 918
            +GE D   FAR +T QAVA  C+A+        A+  +TD    +++ +           GR EPN+ D L  FQ +  P+ W ++R FA                G  +  P                     W QPFHHAVP FP+ ++R         G  A ++ GP S            RPPH+PAFMPPLPP  T R     S G   S   +R ER+KR  Q + AL+ +     A G++AG ++ G
Sbjct:   24 EGEVDSAQFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDFAFSEDGYSNRYDNAASSGSGSAAPAANXXXXXRAAGGGRQELPKRWDQPFHHAVPPFPMPRKRAAPWDHGEEGEEA-ATEGPRS------------RPPHIPAFMPPLPP-STKRGA---SAGSDRSLAEIRLERLKRQRQGETALRSL----GAPGAAAGATAAG 257
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5954.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1V5_9PHAE4.350e-1631.37BTP domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5954contigP-wetherbeei_contig5954:622..1716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4787.PITG_18355T0
PFAMsBromo_TP,TAF8_C
Model size1095
Max annot lvl4776|Peronosporales
KEGG koko:K14649
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-10
EggNOG OGsKOG2389@1|root,KOG2389@2759|Eukaryota,3Q9KP@4776|Peronosporales
Ec32 ortholog descriptionBromodomain transcription factor
Ec32 orthologEc-12_008490.1
DescriptionBromodomain transcription factors and PHD domain containing proteins
Cds size693
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.9700863-UTR-P-wetherbeei_contig5954:621..7891683186877.9700863-UTR-P-wetherbeei_contig5954:621..789Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5954 622..789 -
1683186877.9929922-UTR-P-wetherbeei_contig5954:1482..17161683186877.9929922-UTR-P-wetherbeei_contig5954:1482..1716Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5954 1483..1716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.9826312-CDS-P-wetherbeei_contig5954:789..14821683186877.9826312-CDS-P-wetherbeei_contig5954:789..1482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5954 790..1482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5954.2.1prot_P-wetherbeei_contig5954.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5954 790..1482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5954.2.1

>prot_P-wetherbeei_contig5954.2.1 ID=prot_P-wetherbeei_contig5954.2.1|Name=mRNA_P-wetherbeei_contig5954.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=231bp
MEGGSSSARLSDGESDGFARRITAQAVARACLALDIIEAPPLAIAAVTDA
TASFIDRVGAFAKAAAEAGGRVEPNLTDFLAAFQMLSPPIRWQDIRYFAE
GDEATHPWQQPFHHAVPNFPVRKRRRVEEARAVSGLGAPSSPGPGSTTPG
SDDACELPRPPHVPAFMPPLPPLQTFRSTPVPSLGPPPSHQLMRQERIKR
SAQAKEALQRILVGNEAQGSSAGRSSLGEI*
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mRNA from alignment at P-wetherbeei_contig5954:622..1716-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5954.2.1 ID=mRNA_P-wetherbeei_contig5954.2.1|Name=mRNA_P-wetherbeei_contig5954.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1095bp|location=Sequence derived from alignment at P-wetherbeei_contig5954:622..1716- (Phaeothamnion wetherbeei SAG_119_79)
GCATCTCGCCAACGCTATGCCGCCGTTCGCTCTGGCGGCTGCAGCACGGA
GCGTGTGCATCTCTAAGAGTAGAGGGAAGGTAGGGGAAAGTAGACCGCCG
CGCTAAAAAATGAAGTGATTGCACTGAAGCACGAACAAGGGTTTACCCGC
CCTTGCGGTCAGCAGCCACGCAGCAGGTAGCCGTCGTCTCTTCCACGCGT
CACAAAGGAAAACAGAGAGGAAAAGCAAGAAAAGATGGAGGGCGGCTCGA
GCTCTGCCAGGCTGAGCGACGGCGAGAGCGACGGCTTCGCTCGCAGGATC
ACGGCGCAGGCGGTGGCCCGGGCGTGCCTGGCCTTGGACATCATCGAAGC
ACCCCCTTTGGCCATCGCCGCCGTGACCGACGCGACGGCGAGCTTCATCG
ACAGGGTAGGGGCGTTTGCCAAGGCTGCTGCTGAAGCAGGAGGTCGCGTA
GAGCCGAACCTGACCGACTTTTTGGCAGCGTTTCAGATGCTGTCTCCGCC
AATACGCTGGCAAGACATCCGATACTTCGCGGAAGGCGACGAGGCGACGC
ACCCGTGGCAGCAGCCTTTCCACCACGCGGTGCCGAACTTTCCGGTGCGG
AAGCGGCGGCGCGTGGAGGAGGCACGGGCCGTCAGCGGCCTCGGAGCCCC
GTCCTCGCCCGGCCCTGGATCAACAACACCTGGATCGGACGACGCCTGTG
AGCTGCCGCGGCCGCCACACGTTCCCGCGTTCATGCCGCCGCTGCCGCCT
CTGCAAACGTTCCGGAGCACGCCGGTGCCGTCGTTGGGGCCGCCGCCCAG
CCACCAGTTGATGCGGCAAGAGCGCATCAAGCGCTCGGCGCAGGCGAAGG
AGGCTCTCCAGCGCATTTTGGTCGGCAATGAGGCGCAGGGCAGCTCTGCC
GGAAGGTCCAGTTTAGGTGAGATATAGTGCTTCTTTTTCATGAAGTAAAT
GCTGGAGATGGTTAGTGTATCTGTGTACACTAAAGAAGGGCTGAATTGCG
GCACGATAACCCATGCATCTTCCCCCCCGGATGCCGGCTGAGACCAAACG
CGGTCACCTGCACCGGAAGCAGACTAGCCCGAGAGTATCCACGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5954:622..1716-

>mRNA_P-wetherbeei_contig5954.2.1 ID=mRNA_P-wetherbeei_contig5954.2.1|Name=mRNA_P-wetherbeei_contig5954.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=693bp|location=Sequence derived from alignment at P-wetherbeei_contig5954:622..1716- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGGCGGCTCGAGCTCTGCCAGGCTGAGCGACGGCGAGAGCGACGG
CTTCGCTCGCAGGATCACGGCGCAGGCGGTGGCCCGGGCGTGCCTGGCCT
TGGACATCATCGAAGCACCCCCTTTGGCCATCGCCGCCGTGACCGACGCG
ACGGCGAGCTTCATCGACAGGGTAGGGGCGTTTGCCAAGGCTGCTGCTGA
AGCAGGAGGTCGCGTAGAGCCGAACCTGACCGACTTTTTGGCAGCGTTTC
AGATGCTGTCTCCGCCAATACGCTGGCAAGACATCCGATACTTCGCGGAA
GGCGACGAGGCGACGCACCCGTGGCAGCAGCCTTTCCACCACGCGGTGCC
GAACTTTCCGGTGCGGAAGCGGCGGCGCGTGGAGGAGGCACGGGCCGTCA
GCGGCCTCGGAGCCCCGTCCTCGCCCGGCCCTGGATCAACAACACCTGGA
TCGGACGACGCCTGTGAGCTGCCGCGGCCGCCACACGTTCCCGCGTTCAT
GCCGCCGCTGCCGCCTCTGCAAACGTTCCGGAGCACGCCGGTGCCGTCGT
TGGGGCCGCCGCCCAGCCACCAGTTGATGCGGCAAGAGCGCATCAAGCGC
TCGGCGCAGGCGAAGGAGGCTCTCCAGCGCATTTTGGTCGGCAATGAGGC
GCAGGGCAGCTCTGCCGGAAGGTCCAGTTTAGGTGAGATATAG
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