mRNA_P-wetherbeei_contig5951.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5951.1.1
Unique NamemRNA_P-wetherbeei_contig5951.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5951.1.1 vs. uniprot
Match: A0A835YZQ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZQ0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.290e-13
Identity = 65/203 (32.02%), Postives = 100/203 (49.26%), Query Frame = 3 
Query:   57 LLHNPWISDQLRSILREEQGADGTP-------LVSSPKIVQCIAADDSLSLVVITDTQISIPGILTPAARTEFARRYRGRSFANLAGATLKLESWHFSTVALCA--CNPEPAKG---LRGPLCLQVGGVEVVGPQNASTRGNPVDVNNWPPVRDALQPA-----------RR-----QHLLAILARRQGMQALPDAEGVPSRA 581
            +L  PW+ + L  +L++    + T        + +  +++QC+       L+ ++D+Q ++   LTPAA  + A  +   S + LA + ++LE WH+STVA C    +  PA+    L  PLCL VG V  +G +  ST G+P D+N    V  AL              RR     + L+A L R Q M+ L DA GVP RA
Sbjct:    1 MLGRPWLRNHLLQVLQDGDAGNSTSAPKRTRGVTNGRRMMQCVWVKQEPRLLYLSDSQHAVAAKLTPAAVRKLAAAHN-TSLSALAHSIVRLERWHWSTVAACGEPLSDRPARAGYALTLPLCLHVGDVTPIGARGTSTSGDPRDINTDERVTAALARVGAGXXXXXXXXRRGGESHRALVAQLERAQAMECLLDAAGVPCRA 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5951.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YZQ0_9STRA6.290e-1332.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5951contigP-wetherbeei_contig5951:832..3405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2343
Hectar predicted targeting categoryother localisation
Exons3
Cds size2298
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.8819911-UTR-P-wetherbeei_contig5951:831..8441683186877.8819911-UTR-P-wetherbeei_contig5951:831..844Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5951 832..844 -
1683186877.9212296-UTR-P-wetherbeei_contig5951:3373..34051683186877.9212296-UTR-P-wetherbeei_contig5951:3373..3405Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5951 3374..3405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.8923755-CDS-P-wetherbeei_contig5951:844..29231683186877.8923755-CDS-P-wetherbeei_contig5951:844..2923Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5951 845..2923 -
1683186877.902194-CDS-P-wetherbeei_contig5951:3032..32481683186877.902194-CDS-P-wetherbeei_contig5951:3032..3248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5951 3033..3248 -
1683186877.9134557-CDS-P-wetherbeei_contig5951:3370..33731683186877.9134557-CDS-P-wetherbeei_contig5951:3370..3373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5951 3371..3373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5951.1.1prot_P-wetherbeei_contig5951.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5951 845..3373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5951.1.1

>prot_P-wetherbeei_contig5951.1.1 ID=prot_P-wetherbeei_contig5951.1.1|Name=mRNA_P-wetherbeei_contig5951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=766bp
MPNDGMSGLLHNPWISDQLRSILREEQGADGTPLVSSPKIVQCIAADDSL
SLVVITDTQISIPGILTPAARTEFARRYRGRSFANLAGATLKLESWHFST
VALCACNPEPAKGLRGPLCLQVGGVEVVGPQNASTRGNPVDVNNWPPVRD
ALQPARRQHLLAILARRQGMQALPDAEGVPSRAEPWTDGRNPMVPEPDEA
DGGNGGTPRGGARATNSPKSGSGSRVAAAATAVAAAFGGVLRGAVGIGRW
AVTPHNDDDDDNADDDDEDGEFETQEPTQNMFASQLAYELTDLPTQDEGG
GAENGGGGCGGDGGSSSSGGGGGNASSSAEGHAGSAHEGVEGEGDGNGGG
FDRRAVARWHGGGGAVAAGAEEDEKEVENERNESSRWLTQQWQADGDSAP
QSAPELEPLGSDEEGRGDDDDQETLPEYMPEPAEAAGDAAAESRGMGAGM
DPAAAASGGCGGGGCAASGFCAAGEAAADGGNGGGESPSQRLGSLDWQEN
RQPGATGYLGAASQHGAGGVAAAHEAAAGPGVAAAAASPAAAVAAAGAPA
ATPAAAFFRLSQHPTPPLQLQLSATQQPRLRAVAAGRLAPQPLSSRLTNV
DPRFTTGYFAEWLDNDPYAERTRQIVANGRHGSLREFFAGTPAPPPGSGC
RMPAWLVGPPQPPAGSAPRAAAVAAAGTGGPLQSPVFENWLNAASQPQND
PPPAAAAGWAATPGSANCERVGKRSAPVGSPDGSFQGSAKRPDISEDSGN
AEEGHPPAAPQSGVV*
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mRNA from alignment at P-wetherbeei_contig5951:832..3405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5951.1.1 ID=mRNA_P-wetherbeei_contig5951.1.1|Name=mRNA_P-wetherbeei_contig5951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2574bp|location=Sequence derived from alignment at P-wetherbeei_contig5951:832..3405- (Phaeothamnion wetherbeei SAG_119_79)
TGGCAAAAGAGTGGAGAAACGTCTAATCCATCATGGTAGGCTATGTTTCG
CTTGATGGATGGCGCCGAGGGTCGTGCCGTCACGAAAGGAACTTGCCCCC
TGCTTCCTTCCCTAACGGCGTGAATCTTTTTCTTGTTCTGGTCTCGAAAA
CCTGCAGCCAAATGACGGCATGAGTGGCCTCCTGCATAATCCGTGGATCT
CCGACCAACTGCGTTCGATCTTGAGGGAAGAGCAAGGCGCAGACGGTACG
CCTTTGGTTTCTTCTCCCAAAATCGTGCAGTGCATCGCTGCCGACGACAG
CCTTTCACTTGTGGTAATCACAGACACTCAGATCAGCATTCCTGGGATCC
TGACACCAGCTGCGCGCACAGAGGTAAGTTTGTGTTGAAAGTGGACACAT
GTGGAAGGGTTCCCAAGTTTGGCATTGCTGTTTTCTGCTGACGCCGATCT
CATGAAATTCCTTTCATACTCTCATGTCGCAGTTTGCTCGGCGTTATCGC
GGAAGGTCATTCGCCAACCTCGCCGGCGCAACCCTCAAGCTCGAATCTTG
GCATTTCTCAACGGTGGCCCTCTGCGCGTGCAACCCGGAGCCGGCAAAGG
GCCTGCGCGGGCCACTGTGCCTGCAGGTGGGCGGCGTGGAGGTGGTGGGG
CCACAGAACGCCAGCACTCGCGGGAACCCCGTCGACGTCAACAACTGGCC
GCCGGTCCGGGACGCGCTGCAGCCGGCGAGGCGGCAGCACCTGCTGGCGA
TACTGGCGCGGCGGCAGGGCATGCAGGCGCTGCCCGACGCCGAGGGCGTC
CCGTCCCGAGCGGAGCCGTGGACGGATGGCCGGAATCCGATGGTTCCCGA
GCCTGACGAGGCAGACGGCGGCAATGGCGGGACGCCCCGCGGCGGCGCCC
GTGCCACCAACTCGCCGAAGTCCGGCTCCGGCTCCCGGGTGGCGGCTGCG
GCCACTGCCGTCGCCGCCGCCTTCGGCGGCGTGCTGCGCGGGGCCGTGGG
GATTGGAAGGTGGGCCGTGACGCCCCACAACGACGATGACGATGACAACG
CCGACGATGATGACGAAGACGGCGAGTTTGAGACGCAGGAGCCGACGCAG
AACATGTTTGCTAGCCAGCTTGCCTACGAGCTGACTGACCTTCCTACGCA
AGACGAGGGCGGCGGAGCCGAAAACGGCGGCGGCGGCTGCGGTGGCGACG
GCGGCAGCAGCAGCAGTGGTGGAGGTGGTGGCAACGCTAGCAGTTCCGCC
GAGGGCCACGCCGGTAGCGCCCATGAGGGCGTCGAAGGCGAAGGTGATGG
CAACGGCGGCGGCTTTGATCGAAGAGCTGTGGCAAGATGGCACGGCGGGG
GCGGGGCTGTTGCTGCAGGGGCCGAAGAAGACGAGAAGGAGGTGGAGAAC
GAGAGGAACGAATCGTCCCGCTGGCTCACGCAGCAGTGGCAGGCGGATGG
GGACTCCGCGCCGCAGTCGGCGCCCGAGCTCGAGCCGCTGGGATCCGATG
AAGAGGGAAGGGGCGACGACGACGACCAGGAGACCTTGCCAGAGTACATG
CCCGAGCCTGCTGAGGCCGCCGGAGACGCCGCCGCAGAATCGCGTGGCAT
GGGTGCCGGCATGGATCCTGCGGCGGCGGCTTCGGGCGGCTGCGGCGGCG
GCGGCTGCGCAGCATCTGGATTTTGTGCGGCCGGGGAGGCAGCGGCTGAT
GGTGGCAATGGCGGCGGCGAGAGCCCATCTCAGCGGCTGGGATCTTTGGA
CTGGCAGGAGAACAGACAGCCGGGAGCGACCGGCTATTTGGGAGCTGCTT
CACAACACGGGGCAGGCGGCGTGGCAGCGGCACACGAGGCGGCGGCAGGT
CCTGGTGTTGCTGCTGCTGCTGCTAGCCCCGCCGCCGCCGTCGCCGCCGC
TGGTGCTCCTGCCGCCACCCCAGCCGCTGCGTTCTTCCGTTTGTCGCAGC
ACCCGACACCTCCGCTGCAGCTGCAGCTCTCCGCGACGCAGCAGCCGAGG
CTTCGCGCGGTAGCGGCCGGTCGCCTGGCGCCGCAGCCGCTCTCGTCACG
GCTCACGAACGTCGACCCGCGCTTCACGACGGGGTATTTCGCGGAATGGC
TCGACAACGACCCTTACGCGGAGAGAACCCGGCAAATCGTGGCAAACGGG
CGCCATGGCTCGCTGCGGGAGTTTTTCGCAGGGACGCCGGCGCCGCCGCC
GGGCAGCGGCTGCCGGATGCCGGCGTGGTTAGTGGGGCCGCCGCAGCCTC
CGGCGGGTAGCGCGCCGCGGGCTGCAGCTGTGGCAGCAGCGGGGACGGGA
GGCCCGCTGCAGTCTCCGGTGTTTGAAAACTGGCTGAACGCGGCATCACA
GCCCCAGAACGACCCGCCGCCCGCGGCGGCTGCTGGCTGGGCGGCCACAC
CGGGTAGCGCCAATTGTGAGCGGGTCGGAAAGCGCTCGGCTCCGGTCGGT
TCGCCGGACGGCTCCTTTCAGGGCTCGGCGAAACGACCGGACATTTCGGA
AGATTCAGGGAACGCGGAAGAAGGACACCCGCCGGCTGCTCCTCAGAGCG
GGGTCGTATGAATACGAAGGAAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5951:832..3405-

>mRNA_P-wetherbeei_contig5951.1.1 ID=mRNA_P-wetherbeei_contig5951.1.1|Name=mRNA_P-wetherbeei_contig5951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2298bp|location=Sequence derived from alignment at P-wetherbeei_contig5951:832..3405- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAAATGACGGCATGAGTGGCCTCCTGCATAATCCGTGGATCTCCGA
CCAACTGCGTTCGATCTTGAGGGAAGAGCAAGGCGCAGACGGTACGCCTT
TGGTTTCTTCTCCCAAAATCGTGCAGTGCATCGCTGCCGACGACAGCCTT
TCACTTGTGGTAATCACAGACACTCAGATCAGCATTCCTGGGATCCTGAC
ACCAGCTGCGCGCACAGAGTTTGCTCGGCGTTATCGCGGAAGGTCATTCG
CCAACCTCGCCGGCGCAACCCTCAAGCTCGAATCTTGGCATTTCTCAACG
GTGGCCCTCTGCGCGTGCAACCCGGAGCCGGCAAAGGGCCTGCGCGGGCC
ACTGTGCCTGCAGGTGGGCGGCGTGGAGGTGGTGGGGCCACAGAACGCCA
GCACTCGCGGGAACCCCGTCGACGTCAACAACTGGCCGCCGGTCCGGGAC
GCGCTGCAGCCGGCGAGGCGGCAGCACCTGCTGGCGATACTGGCGCGGCG
GCAGGGCATGCAGGCGCTGCCCGACGCCGAGGGCGTCCCGTCCCGAGCGG
AGCCGTGGACGGATGGCCGGAATCCGATGGTTCCCGAGCCTGACGAGGCA
GACGGCGGCAATGGCGGGACGCCCCGCGGCGGCGCCCGTGCCACCAACTC
GCCGAAGTCCGGCTCCGGCTCCCGGGTGGCGGCTGCGGCCACTGCCGTCG
CCGCCGCCTTCGGCGGCGTGCTGCGCGGGGCCGTGGGGATTGGAAGGTGG
GCCGTGACGCCCCACAACGACGATGACGATGACAACGCCGACGATGATGA
CGAAGACGGCGAGTTTGAGACGCAGGAGCCGACGCAGAACATGTTTGCTA
GCCAGCTTGCCTACGAGCTGACTGACCTTCCTACGCAAGACGAGGGCGGC
GGAGCCGAAAACGGCGGCGGCGGCTGCGGTGGCGACGGCGGCAGCAGCAG
CAGTGGTGGAGGTGGTGGCAACGCTAGCAGTTCCGCCGAGGGCCACGCCG
GTAGCGCCCATGAGGGCGTCGAAGGCGAAGGTGATGGCAACGGCGGCGGC
TTTGATCGAAGAGCTGTGGCAAGATGGCACGGCGGGGGCGGGGCTGTTGC
TGCAGGGGCCGAAGAAGACGAGAAGGAGGTGGAGAACGAGAGGAACGAAT
CGTCCCGCTGGCTCACGCAGCAGTGGCAGGCGGATGGGGACTCCGCGCCG
CAGTCGGCGCCCGAGCTCGAGCCGCTGGGATCCGATGAAGAGGGAAGGGG
CGACGACGACGACCAGGAGACCTTGCCAGAGTACATGCCCGAGCCTGCTG
AGGCCGCCGGAGACGCCGCCGCAGAATCGCGTGGCATGGGTGCCGGCATG
GATCCTGCGGCGGCGGCTTCGGGCGGCTGCGGCGGCGGCGGCTGCGCAGC
ATCTGGATTTTGTGCGGCCGGGGAGGCAGCGGCTGATGGTGGCAATGGCG
GCGGCGAGAGCCCATCTCAGCGGCTGGGATCTTTGGACTGGCAGGAGAAC
AGACAGCCGGGAGCGACCGGCTATTTGGGAGCTGCTTCACAACACGGGGC
AGGCGGCGTGGCAGCGGCACACGAGGCGGCGGCAGGTCCTGGTGTTGCTG
CTGCTGCTGCTAGCCCCGCCGCCGCCGTCGCCGCCGCTGGTGCTCCTGCC
GCCACCCCAGCCGCTGCGTTCTTCCGTTTGTCGCAGCACCCGACACCTCC
GCTGCAGCTGCAGCTCTCCGCGACGCAGCAGCCGAGGCTTCGCGCGGTAG
CGGCCGGTCGCCTGGCGCCGCAGCCGCTCTCGTCACGGCTCACGAACGTC
GACCCGCGCTTCACGACGGGGTATTTCGCGGAATGGCTCGACAACGACCC
TTACGCGGAGAGAACCCGGCAAATCGTGGCAAACGGGCGCCATGGCTCGC
TGCGGGAGTTTTTCGCAGGGACGCCGGCGCCGCCGCCGGGCAGCGGCTGC
CGGATGCCGGCGTGGTTAGTGGGGCCGCCGCAGCCTCCGGCGGGTAGCGC
GCCGCGGGCTGCAGCTGTGGCAGCAGCGGGGACGGGAGGCCCGCTGCAGT
CTCCGGTGTTTGAAAACTGGCTGAACGCGGCATCACAGCCCCAGAACGAC
CCGCCGCCCGCGGCGGCTGCTGGCTGGGCGGCCACACCGGGTAGCGCCAA
TTGTGAGCGGGTCGGAAAGCGCTCGGCTCCGGTCGGTTCGCCGGACGGCT
CCTTTCAGGGCTCGGCGAAACGACCGGACATTTCGGAAGATTCAGGGAAC
GCGGAAGAAGGACACCCGCCGGCTGCTCCTCAGAGCGGGGTCGTATGA
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