mRNA_P-wetherbeei_contig5942.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5942.2.1
Unique NamemRNA_P-wetherbeei_contig5942.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: A0A835ZF18_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF18_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.520e-66
Identity = 107/200 (53.50%), Postives = 137/200 (68.50%), Query Frame = 2
Query:  218 KAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVLSREDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTPTRTF 817
            KA LR  +KT L  LE   IA +S +I   L  +P  + +  VS YL+M +EAQT  I+  LF  GK+VY+P+++GPDP+DMRM+ + S+ +IESFP TKW IPEPS E VL+ EDG   GDID+V+ PGCAFDA CNRLGHGKGYYD FL+R     +  G P    VGI L+EQ++ +VP + HDV LD VVTP + F
Sbjct:   14 KAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVF 213          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: D7FQL2_ECTSI (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQL2_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.110e-64
Identity = 108/212 (50.94%), Postives = 139/212 (65.57%), Query Frame = 2
Query:  206 VRATKAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAE------AVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVLSREDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTPTRTFWR 823
            VR  K  LRK +K+ LK +  + +  ASA++A+RL   P +   E      AVSVYL+M KE  T+ I++ LF RGKKVYIP+++G   ADMRMFP+ S  E+ SFP TKW I EPS ELV SREDGV  GDI V++ P  A D  CNRLGHG+G+YDCF  R  +     GRP    +G+  DEQ+++ +PT + DV LD V+TPTRTF R
Sbjct:   32 VREQKKALRKRIKSELKQMSDEAVGVASAAVAERLLSFPQLQQQEGGDGGGAVSVYLSMPKELGTSAIVSGLFKRGKKVYIPKVLGAASADMRMFPVRSEEEVASFPLTKWKISEPSEELVFSREDGVTEGDISVIIVPAVALDPTCNRLGHGRGHYDCFFERVNKASMDKGRPPPVTIGVCFDEQVVDCIPTESTDVRLDFVLTPTRTFRR 243          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: A0A7S3LPS7_9STRA (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LPS7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.740e-52
Identity = 94/205 (45.85%), Postives = 130/205 (63.41%), Query Frame = 2
Query:  209 RATKAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVLSREDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTPTRTFWR 823
            +A K  +RK     +  L A+ IA  S  +AQ  S +  +  ++ VS+YL+M KE QT+ +L  LF   K+V+IP++ G    DM M  L SL EI+    TKWGIPE +   + +R DG+  G+ID V+APG  F+  C RLGHG GYYDCFL R +E R+ LG P A V+GI L+EQ+L+ +P S +DV+LD V+TPT+ F R
Sbjct:    9 KAMKKAVRKSTSKIVSALSAEAIAEQSTRLAQHASGLKVLQASKNVSLYLSMKKELQTDSLLKWLFDNNKRVFIPKVTGKASQDMIMPELRSLEEIKLMKETKWGIPEFTESQLENRSDGIETGEIDFVLAPGVGFNHQCLRLGHGGGYYDCFLTRLQEKRKTLGLPPAFVLGIALEEQILDHIPVSEYDVTLDGVLTPTKLFLR 213          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: W4FG50_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FG50_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.400e-50
Identity = 92/209 (44.02%), Postives = 130/209 (62.20%), Query Frame = 2
Query:  206 VRATKAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELV--LSREDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRR-AEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTPTRTFWR 823
            V+A K  +RK++  +L+   AD++A ASA +   L   P    A++V  YL M  EA T  I+ ++FA+GKK+Y+P++ GP   DM M  + S  +I++FP +KW IPEP  +    L RE+ +   D+D+++ PG AFDA CNRLGHGKGYYDCF  R A + R  L       +GI L EQ+++ VPTSAHD +LD +VTP     R
Sbjct:   14 VKALKQVIRKDIDLKLRQYSADEVASASAQLTSHLVQHPAFVQAKSVCAYLPMPNEASTAAIIHEIFAQGKKLYVPKVTGPRSEDMVMLHVTSQRDIDTFPKSKWNIPEPLLDHPNGLPRENALDVTDLDLILVPGVAFDAHCNRLGHGKGYYDCFFERYASKCRGAL----PPTLGIALPEQVIDQVPTSAHDKALDGLVTPRGVLSR 218          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: A0A2R5GGK1_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGK1_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.600e-50
Identity = 96/207 (46.38%), Postives = 126/207 (60.87%), Query Frame = 2
Query:  218 KAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVLSREDGV---VAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTPTRTFWRGG 829
            K  LR+E+ T LK +  D +  AS  +A+ + ++P    AE VS+YLAM  EAQT   L  LF   K+V++P+I+G    DMRM  LASL E+      KWGIPE + E +  R DGV   V   +DVV  PG AF     RLGHGKGYYD FL++ +  R+  G P A  VG+ LDEQ+L+AVP   HDV+LDAV TP+  ++  G
Sbjct:    3 KKTLRREIATVLKNMGEDKMHAASKQLAEHIKEIPRAQTAERVSIYLAMKNEAQTQTALEWLFDAKKRVFVPKIIGAGSEDMRMPELASLEELAGLDKFKWGIPEFTLEQLEERADGVDSSVEDLVDVVFTPGVAFTTDGFRLGHGKGYYDAFLKKLQRARKAAGLPPAYTVGLSLDEQILDAVPVEDHDVALDAVATPSAVYYCAG 209          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: A0A0G4F0S7_VITBC (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F0S7_VITBC)

HSP 1 Score: 176 bits (447), Expect = 2.350e-50
Identity = 97/224 (43.30%), Postives = 137/224 (61.16%), Query Frame = 2
Query:  155 SSNSNSGVLMASDPDALVRATKAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAK-EAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVLSREDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLGRPRAAVVGIGLDEQLLE--AVPTSAHDVSLDAVVTPTRTF 817
            +S S S V   +   + +   K  LR++V+ +LK L  + I   SA++  +LS  P    ++ V VYL+M   E  T+ ++ + F +GK+V++PR++G +P DMRM  ++S+ EI SFP + WGIPE S +  L REDG   GDID+V+ PG AFD +  RLGHGKGYYDCFL R     +  GRPR   +GIGL EQLL    +P  + D+ LD VVTP   +
Sbjct:   12 ASVSTSDVQPGATSVSAISEQKKALRRQVRGQLKSLSHESIEPQSAAVFAQLSQHPTFVRSQCVCVYLSMPSGEIDTHTLVREAFRQGKRVFVPRVVGKNPPDMRMVEVSSVDEISSFPMSPWGIPELSLDETLRREDGTYCGDIDLVICPGVAFDQSGRRLGHGKGYYDCFLARLFASLKDRGRPRTTTIGIGLREQLLPLATIPMDSLDMFLDWVVTPDGVY 235          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: A0A8K1CD56_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD56_PYTOL)

HSP 1 Score: 173 bits (439), Expect = 1.430e-49
Identity = 94/204 (46.08%), Postives = 122/204 (59.80%), Query Frame = 2
Query:  212 ATKAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVLS--REDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTPTRTF 817
            A K  LRK +   L+ +E  +I R S +IAQR++ +P    A A+SVYL M KEA T  IL   FA  KKVY+P+I+G    D++M   +SL +I++FP  KW IP+P  E      R D + + D+D+V+ PG AFD +  RLGHGKGYYD FLRR  E      RP    VGI L  QL++AVP S HD  LD +VTP    
Sbjct:    9 AIKKALRKSIAASLRAIEDQEITRQSDAIAQRIAALPEFQQAMALSVYLHMPKEAATRNILTHSFAEKKKVYVPKIVGKGAEDLKMVHASSLEDIDAFPKDKWQIPDPPLENSAGEPRNDAITSRDLDLVLLPGVAFDRSGGRLGHGKGYYDSFLRRLTEAYDEHNRPLPVTVGICLSSQLVDAVPLSPHDRMLDVIVTPEEVI 212          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: A0A067D9P6_SAPPC (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9P6_SAPPC)

HSP 1 Score: 172 bits (437), Expect = 2.450e-49
Identity = 92/202 (45.54%), Postives = 125/202 (61.88%), Query Frame = 2
Query:  206 VRATKAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVLSRE--DGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTP 805
            VR+ KA LRK +   L+ L  D++   S ++AQ +  +     A +VSVYLAM  EA+T+ ++  LFA GK+VY+P+++G    DM M  + S  E+ +FP +KWGIPEP + L   R   D + A D+D+V+ PG AFD  CNRLGHGKGYYDCFL R        G      +GI L+ Q+++AVPTS HD  LD V TP
Sbjct:    5 VRSQKAVLRKHIAGLLRALSRDEVVAQSEALAQHVVALDVFRHARSVSVYLAMEAEAKTSTLVDALFAAGKRVYVPKVIGAKSEDMVMLRVDSATEMATFPKSKWGIPEPPSSLPSGRPRIDALDALDVDIVLVPGVAFDPRCNRLGHGKGYYDCFLERYASRN---GGKLPVTIGIALEAQIVDAVPTSGHDKMLDMVATP 203          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: A0A024UKC7_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKC7_9STRA)

HSP 1 Score: 172 bits (435), Expect = 4.880e-49
Identity = 92/202 (45.54%), Postives = 125/202 (61.88%), Query Frame = 2
Query:  206 VRATKAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVLS--REDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTP 805
            VRA K  LRK++  +L+ L AD+IA ASA +   L   P    A+ V  YL M  EA T+ I+ ++FA+GKK+Y+P++ GP   DM M  +AS  +I++FP +KW IPEP  E      R+  +   D+D+++ PG AFD  CNRLGHGKGYYDCF  R       L  P   ++G+ L EQ++  VPT  HD +LDAVVTP
Sbjct:    4 VRALKKALRKDIDQKLRQLTADEIAEASAQLTAHLIQHPAFVMAKTVCAYLPMPNEASTSGIIDEIFAQGKKLYVPKVTGPRSEDMVMLHVASQRDIDAFPKSKWNIPEPWFEHPHGGLRDSALDEVDLDLILVPGVAFDGQCNRLGHGKGYYDCFFDRYASKTNGLLPP---MLGVALAEQIVSRVPTCEHDKALDAVVTP 202          
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Match: A0A485KPN3_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPN3_9STRA)

HSP 1 Score: 172 bits (435), Expect = 7.210e-49
Identity = 96/203 (47.29%), Postives = 134/203 (66.01%), Query Frame = 2
Query:  206 VRATKAGLRKEVKTRLKVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADLFARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELV--LSREDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRR-AEEVRRVLGRPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTP 805
            V+  K  LRK++  +LK +  +DIA ASA++ + L  +P    A++V  YLAM  EA T+ IL ++FA+GK++Y+P++ G +  DM M  + S A+IESFP +KW IPEP+  L   L+R + +   D+D+++ PG AFDA+CNRLGHGKGYYD F  R A +    L     A VGI L  QL+++VPTSAHD  LD VVTP
Sbjct:   18 VKTLKKTLRKDIDHQLKHMAREDIAAASANLQRHLVTLPEFIRAKSVCAYLAMPNEASTDTILREIFAQGKQLYVPKVTGGNSEDMLMLRVESEADIESFPKSKWNIPEPALLLPSGLARLNALDTLDVDLIIVPGVAFDASCNRLGHGKGYYDSFFERYAAKADGHL----PATVGIALALQLVDSVPTSAHDRVLDMVVTP 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5942.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF18_9STRA1.520e-6653.505-formyltetrahydrofolate cyclo-ligase n=1 Tax=Trib... [more]
D7FQL2_ECTSI1.110e-6450.945-formyltetrahydrofolate cyclo-ligase n=2 Tax=Ecto... [more]
A0A7S3LPS7_9STRA5.740e-5245.855-formyltetrahydrofolate cyclo-ligase n=2 Tax=Apla... [more]
W4FG50_9STRA1.400e-5044.025-formyltetrahydrofolate cyclo-ligase n=1 Tax=Apha... [more]
A0A2R5GGK1_9STRA1.600e-5046.385-formyltetrahydrofolate cyclo-ligase n=1 Tax=Hond... [more]
A0A0G4F0S7_VITBC2.350e-5043.305-formyltetrahydrofolate cyclo-ligase n=1 Tax=Vitr... [more]
A0A8K1CD56_PYTOL1.430e-4946.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067D9P6_SAPPC2.450e-4945.545-formyltetrahydrofolate cyclo-ligase n=2 Tax=Sapr... [more]
A0A024UKC7_9STRA4.880e-4945.545-formyltetrahydrofolate cyclo-ligase n=1 Tax=Apha... [more]
A0A485KPN3_9STRA7.210e-4947.295-formyltetrahydrofolate cyclo-ligase n=1 Tax=Apha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5942contigP-wetherbeei_contig5942:471..1637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQL2
Preferred nameMTHFS
PFAMs5-FTHF_cyc-lig,IATP
Model size960
Max annot lvl2759|Eukaryota
KEGG rclassRC00183
KEGG koko:K01934,ko:K02731,ko:K22255
KEGG ReactionR02301
KEGG Pathwayko00670,ko01100,ko03050,map00670,map01100,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0005524,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009064,GO:0009108,GO:0009109,GO:0009111,GO:0009396,GO:0009397,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015942,GO:0016053,GO:0016054,GO:0016874,GO:0016879,GO:0016882,GO:0016999,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019752,GO:0019842,GO:0019899,GO:0030234,GO:0030272,GO:0030554,GO:0031406,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032780,GO:0032787,GO:0033013,GO:0033014,GO:0033218,GO:0034641,GO:0035639,GO:0035999,GO:0036094,GO:0042030,GO:0042168,GO:0042219,GO:0042365,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0042560,GO:0042737,GO:0042742,GO:0043086,GO:0043167,GO:0043168,GO:0043177,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043462,GO:0043603,GO:0043604,GO:0043648,GO:0043649,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046394,GO:0046395,GO:0046483,GO:0046653,GO:0046655,GO:0046657,GO:0046700,GO:0050790,GO:0050830,GO:0050896,GO:0051117,GO:0051186,GO:0051187,GO:0051188,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0072341,GO:0097159,GO:0097367,GO:0098542,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605
Exons2
Evalue4.71e-66
EggNOG OGsCOG0212@1|root,KOG3093@2759|Eukaryota
Ec32 ortholog description5-formyltetrahydrofolate cyclo-ligase
Ec32 orthologEc-01_009140.1
EC3.4.25.1,6.3.3.2
Description5-formyltetrahydrofolate cyclo-ligase activity
Cds size744
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.15912-UTR-P-wetherbeei_contig5942:470..5831683186877.15912-UTR-P-wetherbeei_contig5942:470..583Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5942 471..583 -
1683186877.1979783-UTR-P-wetherbeei_contig5942:1534..16371683186877.1979783-UTR-P-wetherbeei_contig5942:1534..1637Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5942 1535..1637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.177405-CDS-P-wetherbeei_contig5942:583..9941683186877.177405-CDS-P-wetherbeei_contig5942:583..994Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5942 584..994 -
1683186877.1889856-CDS-P-wetherbeei_contig5942:1201..15341683186877.1889856-CDS-P-wetherbeei_contig5942:1201..1534Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5942 1202..1534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5942.2.1prot_P-wetherbeei_contig5942.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5942 584..1534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5942.2.1

>prot_P-wetherbeei_contig5942.2.1 ID=prot_P-wetherbeei_contig5942.2.1|Name=mRNA_P-wetherbeei_contig5942.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
MPFRPFLISQLIAVRSASSNSNSGVLMASDPDALVRATKAGLRKEVKTRL
KVLEADDIARASASIAQRLSDVPGIADAEAVSVYLAMAKEAQTNLILADL
FARGKKVYIPRIMGPDPADMRMFPLASLAEIESFPSTKWGIPEPSAELVL
SREDGVVAGDIDVVVAPGCAFDAACNRLGHGKGYYDCFLRRAEEVRRVLG
RPRAAVVGIGLDEQLLEAVPTSAHDVSLDAVVTPTRTFWRGGGTAVA*
back to top

mRNA from alignment at P-wetherbeei_contig5942:471..1637-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5942.2.1 ID=mRNA_P-wetherbeei_contig5942.2.1|Name=mRNA_P-wetherbeei_contig5942.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig5942:471..1637- (Phaeothamnion wetherbeei SAG_119_79)
TTTTCTCTATCCTGTGCCAGCGCCGTCTTGTCACCCTTGGCAGAAGTCGC TTCCCGCTATCTGGAAGCAAGCTCTTCGTCAGACCAAATTTTCACGACTC TTGATGCCTTTTAGGCCCTTCCTCATTTCACAGCTCATAGCAGTGCGCAG CGCAAGCTCTAACAGCAACAGCGGCGTCCTGATGGCCTCCGACCCGGACG CACTCGTTCGCGCCACAAAGGCAGGCCTTCGAAAGGAGGTGAAAACAAGG CTTAAGGTGCTCGAGGCAGACGACATTGCGCGTGCCTCTGCAAGTATCGC GCAGCGGCTTTCCGATGTGCCCGGGATAGCCGACGCCGAGGCCGTCAGCG TCTATTTGGCAATGGCGAAAGAGGCGCAAACGAACCTCATCCTTGCGGAC CTTTTCGCCCGCGGCAAGAAGGTTTACATCCCCAGGGTGCGTTTTCCACG TCCTTTCTCAGACGAAGCGGAGTACATTTTATGCGCTCATTCGCGTCGCG GGGTATGTTACATTCTCTCATTCGCATCGCTTTTGGCGGAACAGCTCTTT TCCGTATCTTGCTTTGGACACGCACAACCGTCGTTTTCTTTCTACCATTC GACATTTCCCTTCGCTCTTCCCGCACTCTCTTCACACGGCCAGATAATGG GCCCCGACCCGGCGGACATGCGCATGTTCCCTCTGGCGTCGCTGGCCGAG ATTGAGTCGTTCCCGTCTACCAAATGGGGCATCCCTGAGCCCTCGGCCGA ACTCGTCCTCTCCCGCGAAGACGGCGTCGTCGCCGGAGACATCGACGTTG TCGTCGCCCCCGGCTGCGCCTTTGACGCCGCCTGCAACCGCCTCGGCCAC GGAAAGGGATACTACGACTGTTTTCTGCGGCGGGCGGAGGAGGTGCGGCG GGTGCTGGGGAGGCCGCGGGCGGCGGTGGTGGGCATCGGACTGGACGAGC AGCTGCTGGAGGCAGTGCCGACGTCGGCGCACGACGTGTCGCTAGACGCC GTCGTCACGCCCACACGCACCTTTTGGAGGGGCGGCGGGACGGCAGTGGC ATAGAAAACATGTGGGGAAGTCTAGTAGTGACAGCTTTTAGCAATCTGTG CAGAACTAGAATCCAACACTGGCAACAAGTGCCGCCTTAGAGAACAATAA AGCAAAAGAATGGAGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5942:471..1637-

>mRNA_P-wetherbeei_contig5942.2.1 ID=mRNA_P-wetherbeei_contig5942.2.1|Name=mRNA_P-wetherbeei_contig5942.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig5942:471..1637- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTTTTAGGCCCTTCCTCATTTCACAGCTCATAGCAGTGCGCAGCGC
AAGCTCTAACAGCAACAGCGGCGTCCTGATGGCCTCCGACCCGGACGCAC
TCGTTCGCGCCACAAAGGCAGGCCTTCGAAAGGAGGTGAAAACAAGGCTT
AAGGTGCTCGAGGCAGACGACATTGCGCGTGCCTCTGCAAGTATCGCGCA
GCGGCTTTCCGATGTGCCCGGGATAGCCGACGCCGAGGCCGTCAGCGTCT
ATTTGGCAATGGCGAAAGAGGCGCAAACGAACCTCATCCTTGCGGACCTT
TTCGCCCGCGGCAAGAAGGTTTACATCCCCAGGATAATGGGCCCCGACCC
GGCGGACATGCGCATGTTCCCTCTGGCGTCGCTGGCCGAGATTGAGTCGT
TCCCGTCTACCAAATGGGGCATCCCTGAGCCCTCGGCCGAACTCGTCCTC
TCCCGCGAAGACGGCGTCGTCGCCGGAGACATCGACGTTGTCGTCGCCCC
CGGCTGCGCCTTTGACGCCGCCTGCAACCGCCTCGGCCACGGAAAGGGAT
ACTACGACTGTTTTCTGCGGCGGGCGGAGGAGGTGCGGCGGGTGCTGGGG
AGGCCGCGGGCGGCGGTGGTGGGCATCGGACTGGACGAGCAGCTGCTGGA
GGCAGTGCCGACGTCGGCGCACGACGTGTCGCTAGACGCCGTCGTCACGC
CCACACGCACCTTTTGGAGGGGCGGCGGGACGGCAGTGGCATAG
back to top