mRNA_P-wetherbeei_contig59124.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: UPI001CFB8F05 (PilW family protein n=1 Tax=Ferribacterium limneticum TaxID=76259 RepID=UPI001CFB8F05) HSP 1 Score: 70.9 bits (172), Expect = 1.040e-12 Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 1
Query: 19 RGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNA--GLNPNDIFPKASAPAITG 270
+GF++VE MVA+ IGLIV LVVG +F+ SRQ++ +Q+ ++R+QEN R A+ L R IR AGY + + L+ D+F K + +G
Sbjct: 18 QGFSLVELMVALVIGLIVLLVVGTLFMNSRQTYLAQDANSRLQENARYATELFGRQIRSAGYTATSFSPLSATDLFAKPPSTKFSG 103
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A2N2S1P0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-4 TaxID=2013716 RepID=A0A2N2S1P0_9PROT) HSP 1 Score: 69.7 bits (169), Expect = 2.690e-12 Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 1 GMTAAARGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGY 204
G+ ++ RGF++VE MVA+ IGLIV LVVG +F+ SRQ++ +Q+ ++R+QEN R A+ L R +R AGY
Sbjct: 12 GIVSSERGFSLVELMVAMVIGLIVVLVVGTLFMNSRQTYMAQDANSRLQENARYATELFGRQVRTAGY 79
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A3E1DDM4_9PROT (Type IV pilus assembly protein PilW n=1 Tax=Candidatus Nitrotoga sp. SPKER TaxID=2184312 RepID=A0A3E1DDM4_9PROT) HSP 1 Score: 69.7 bits (169), Expect = 4.200e-12 Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 22 GFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGLNPNDIFPKASAP----AITGVDNLT 285
GF++VE M+AI +GLIV L VG I++GSRQ++ QED+AR+QE R A +L R+IR AG + N + + P AI+GV+ +T
Sbjct: 25 GFSLVELMIAITLGLIVLLAVGSIYIGSRQTYRVQEDNARLQEAGRYALEVLGRSIRQAGANAEMNFNKTATALQCNVPGICDAISGVNGVT 116
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A4R7PC47_9GAMM (Type IV pilus assembly protein PilW n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4R7PC47_9GAMM) HSP 1 Score: 69.3 bits (168), Expect = 5.300e-12 Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 19 RGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAG 219
+GFT++E M+A+ +GL+V LVVGQI+V RQS+ +Q MQEN R A L R IR+AG+P G
Sbjct: 13 KGFTLIELMIALVLGLVVVLVVGQIYVSGRQSYRTQTGFGGMQENGRFALFFLQRDIRMAGFPREQG 79
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A352KL21_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A352KL21_9GAMM) HSP 1 Score: 67.0 bits (162), Expect = 8.100e-12 Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 22 GFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGL--------NPNDIFPKASAPAITGVDNLT 285
GFT+VE ++A+ +GL+++ G + + ++QSF + + ++R+QE R A LLTR +R AGY AGL NP +F + P + G D+ T
Sbjct: 25 GFTLVELLIALTLGLLLTASFGSVLISNKQSFRAMDATSRVQETGRYAMHLLTRDLRSAGYQGCAGLSANITNTLNPGPLFTSLNGPPLQGYDHKT 120
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: UPI001EFAAC2A (PilW family protein n=1 Tax=Candidatus Nitrotoga arctica TaxID=453162 RepID=UPI001EFAAC2A) HSP 1 Score: 68.6 bits (166), Expect = 9.040e-12 Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 19 RGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGLNPNDIFPKASAP----AITGVDNLT 285
GF++VE M+AI +GLIV L VG IF+GSRQ++ QED+AR+QE R A ++ R+IR AG + N + + P AI GV+ T
Sbjct: 6 EGFSLVELMIAITLGLIVLLAVGSIFIGSRQTYRVQEDNARLQEAGRYALEVIGRSIRQAGANAEMNFNKTATALQCNVPGVCDAIGGVNGAT 98
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: UPI001EF460FC (PilW family protein n=1 Tax=Candidatus Nitrotoga sp. 1052 TaxID=2886964 RepID=UPI001EF460FC) HSP 1 Score: 67.4 bits (163), Expect = 2.950e-11 Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 1 GMTAAARGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGLNPN 231
GM GF++VE M+AI +GLIV L VG I++GSRQ++ QED+AR+QE R A +L R+IR AG +NA +N N
Sbjct: 14 GMPRHQAGFSLVELMIAITLGLIVLLAVGSIYIGSRQTYRVQEDNARIQEAGRYALEVLGRSIRQAG--ANAEMNFN 88
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A658BSY5_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A658BSY5_9PROT) HSP 1 Score: 66.2 bits (160), Expect = 5.860e-11 Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 22 GFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGLNPNDIFPKASAP-----AITGVD 276
G T+VE MVA+AIGL + V+ +FVG++Q++ SQ++ +R+QEN R A LL R IR AGY + + P ++ SA AITG D
Sbjct: 34 GLTMVELMVAMAIGLFLVAVIATLFVGAKQTYRSQDNLSRLQENGRFAMELLGRNIRDAGYTNISFAPPASLYAPPSATSFSGTAITGTD 123
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A7S6S909_9GAMM (PilW family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7S6S909_9GAMM) HSP 1 Score: 66.2 bits (160), Expect = 6.450e-11 Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1 GMTAAARGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGY 204
G+ RGFT+VE MV + IGL++ LV+G +FV SRQ F QED+AR+QE R A ++ R+I+ AG+
Sbjct: 18 GVPGIQRGFTLVELMVGMTIGLVLLLVIGSVFVSSRQVFREQEDNARVQEGGRFALEIIGRSIKQAGH 85
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A1H8JHA7_9PROT (Type IV pilus assembly protein PilW n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A1H8JHA7_9PROT) HSP 1 Score: 65.9 bits (159), Expect = 9.030e-11 Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 19 RGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGY 204
RGFT+VE M+ + IGL++ LV+G +FV SRQ F QED+AR+QE+ R A ++ R+I+ AG+
Sbjct: 25 RGFTLVELMIGMTIGLVLLLVIGSVFVSSRQVFREQEDNARVQESGRFALEIIGRSIKQAGH 86 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig59124.1.1 >prot_P-wetherbeei_contig59124.1.1 ID=prot_P-wetherbeei_contig59124.1.1|Name=mRNA_P-wetherbeei_contig59124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp MTAAARGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENback to top mRNA from alignment at P-wetherbeei_contig59124:214..498+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig59124.1.1 ID=mRNA_P-wetherbeei_contig59124.1.1|Name=mRNA_P-wetherbeei_contig59124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig59124:214..498+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig59124:214..498+ >mRNA_P-wetherbeei_contig59124.1.1 ID=mRNA_P-wetherbeei_contig59124.1.1|Name=mRNA_P-wetherbeei_contig59124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig59124:214..498+ (Phaeothamnion wetherbeei SAG_119_79)back to top |