mRNA_P-wetherbeei_contig59124.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59124.1.1
Unique NamemRNA_P-wetherbeei_contig59124.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: UPI001CFB8F05 (PilW family protein n=1 Tax=Ferribacterium limneticum TaxID=76259 RepID=UPI001CFB8F05)

HSP 1 Score: 70.9 bits (172), Expect = 1.040e-12
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   19 RGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNA--GLNPNDIFPKASAPAITG 270
            +GF++VE MVA+ IGLIV LVVG +F+ SRQ++ +Q+ ++R+QEN R A+ L  R IR AGY + +   L+  D+F K  +   +G
Sbjct:   18 QGFSLVELMVALVIGLIVLLVVGTLFMNSRQTYLAQDANSRLQENARYATELFGRQIRSAGYTATSFSPLSATDLFAKPPSTKFSG 103          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A2N2S1P0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-4 TaxID=2013716 RepID=A0A2N2S1P0_9PROT)

HSP 1 Score: 69.7 bits (169), Expect = 2.690e-12
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 GMTAAARGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGY 204
            G+ ++ RGF++VE MVA+ IGLIV LVVG +F+ SRQ++ +Q+ ++R+QEN R A+ L  R +R AGY
Sbjct:   12 GIVSSERGFSLVELMVAMVIGLIVVLVVGTLFMNSRQTYMAQDANSRLQENARYATELFGRQVRTAGY 79          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A3E1DDM4_9PROT (Type IV pilus assembly protein PilW n=1 Tax=Candidatus Nitrotoga sp. SPKER TaxID=2184312 RepID=A0A3E1DDM4_9PROT)

HSP 1 Score: 69.7 bits (169), Expect = 4.200e-12
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   22 GFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGLNPNDIFPKASAP----AITGVDNLT 285
            GF++VE M+AI +GLIV L VG I++GSRQ++  QED+AR+QE  R A  +L R+IR AG  +    N      + + P    AI+GV+ +T
Sbjct:   25 GFSLVELMIAITLGLIVLLAVGSIYIGSRQTYRVQEDNARLQEAGRYALEVLGRSIRQAGANAEMNFNKTATALQCNVPGICDAISGVNGVT 116          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A4R7PC47_9GAMM (Type IV pilus assembly protein PilW n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4R7PC47_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 5.300e-12
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   19 RGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAG 219
            +GFT++E M+A+ +GL+V LVVGQI+V  RQS+ +Q     MQEN R A   L R IR+AG+P   G
Sbjct:   13 KGFTLIELMIALVLGLVVVLVVGQIYVSGRQSYRTQTGFGGMQENGRFALFFLQRDIRMAGFPREQG 79          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A352KL21_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A352KL21_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 8.100e-12
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   22 GFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGL--------NPNDIFPKASAPAITGVDNLT 285
            GFT+VE ++A+ +GL+++   G + + ++QSF + + ++R+QE  R A  LLTR +R AGY   AGL        NP  +F   + P + G D+ T
Sbjct:   25 GFTLVELLIALTLGLLLTASFGSVLISNKQSFRAMDATSRVQETGRYAMHLLTRDLRSAGYQGCAGLSANITNTLNPGPLFTSLNGPPLQGYDHKT 120          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: UPI001EFAAC2A (PilW family protein n=1 Tax=Candidatus Nitrotoga arctica TaxID=453162 RepID=UPI001EFAAC2A)

HSP 1 Score: 68.6 bits (166), Expect = 9.040e-12
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   19 RGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGLNPNDIFPKASAP----AITGVDNLT 285
             GF++VE M+AI +GLIV L VG IF+GSRQ++  QED+AR+QE  R A  ++ R+IR AG  +    N      + + P    AI GV+  T
Sbjct:    6 EGFSLVELMIAITLGLIVLLAVGSIFIGSRQTYRVQEDNARLQEAGRYALEVIGRSIRQAGANAEMNFNKTATALQCNVPGVCDAIGGVNGAT 98          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: UPI001EF460FC (PilW family protein n=1 Tax=Candidatus Nitrotoga sp. 1052 TaxID=2886964 RepID=UPI001EF460FC)

HSP 1 Score: 67.4 bits (163), Expect = 2.950e-11
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 GMTAAARGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGLNPN 231
            GM     GF++VE M+AI +GLIV L VG I++GSRQ++  QED+AR+QE  R A  +L R+IR AG  +NA +N N
Sbjct:   14 GMPRHQAGFSLVELMIAITLGLIVLLAVGSIYIGSRQTYRVQEDNARIQEAGRYALEVLGRSIRQAG--ANAEMNFN 88          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A658BSY5_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A658BSY5_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 5.860e-11
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   22 GFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGYPSNAGLNPNDIFPKASAP-----AITGVD 276
            G T+VE MVA+AIGL +  V+  +FVG++Q++ SQ++ +R+QEN R A  LL R IR AGY + +   P  ++   SA      AITG D
Sbjct:   34 GLTMVELMVAMAIGLFLVAVIATLFVGAKQTYRSQDNLSRLQENGRFAMELLGRNIRDAGYTNISFAPPASLYAPPSATSFSGTAITGTD 123          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A7S6S909_9GAMM (PilW family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7S6S909_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 6.450e-11
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 GMTAAARGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGY 204
            G+    RGFT+VE MV + IGL++ LV+G +FV SRQ F  QED+AR+QE  R A  ++ R+I+ AG+
Sbjct:   18 GVPGIQRGFTLVELMVGMTIGLVLLLVIGSVFVSSRQVFREQEDNARVQEGGRFALEIIGRSIKQAGH 85          
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Match: A0A1H8JHA7_9PROT (Type IV pilus assembly protein PilW n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A1H8JHA7_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 9.030e-11
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   19 RGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQENMRSASILLTRTIRLAGY 204
            RGFT+VE M+ + IGL++ LV+G +FV SRQ F  QED+AR+QE+ R A  ++ R+I+ AG+
Sbjct:   25 RGFTLVELMIGMTIGLVLLLVIGSVFVSSRQVFREQEDNARVQESGRFALEIIGRSIKQAGH 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CFB8F051.040e-1245.35PilW family protein n=1 Tax=Ferribacterium limneti... [more]
A0A2N2S1P0_9PROT2.690e-1251.47Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3E1DDM4_9PROT4.200e-1244.57Type IV pilus assembly protein PilW n=1 Tax=Candid... [more]
A0A4R7PC47_9GAMM5.300e-1250.75Type IV pilus assembly protein PilW n=1 Tax=Panaca... [more]
A0A352KL21_9GAMM8.100e-1236.46Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]
UPI001EFAAC2A9.040e-1244.09PilW family protein n=1 Tax=Candidatus Nitrotoga a... [more]
UPI001EF460FC2.950e-1151.95PilW family protein n=1 Tax=Candidatus Nitrotoga s... [more]
A0A658BSY5_9PROT5.860e-1144.44Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
A0A7S6S909_9GAMM6.450e-1150.00PilW family protein n=1 Tax=Gammaproteobacteria ba... [more]
A0A1H8JHA7_9PROT9.030e-1151.61Type IV pilus assembly protein PilW n=6 Tax=Proteo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59124contigP-wetherbeei_contig59124:214..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123279.ATUS01000002_gene114
Preferred namepilW
PFAMsN_methyl,PilW
Model size285
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02672
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.18e-11
EggNOG OGsCOG4966@1|root,COG4966@2|Bacteria,1R5YK@1224|Proteobacteria,1RZIZ@1236|Gammaproteobacteria,1J6X1@118884|unclassified Gammaproteobacteria
DescriptionCOG4966 Tfp pilus assembly protein PilW
Cds size282
COG categoryNU
BRITEko00000,ko02035,ko02044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.2035806-UTR-P-wetherbeei_contig59124:213..2161683186874.2035806-UTR-P-wetherbeei_contig59124:213..216Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59124 214..216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.2172818-CDS-P-wetherbeei_contig59124:216..4981683186874.2172818-CDS-P-wetherbeei_contig59124:216..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59124 217..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59124.1.1prot_P-wetherbeei_contig59124.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59124 217..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59124.1.1

>prot_P-wetherbeei_contig59124.1.1 ID=prot_P-wetherbeei_contig59124.1.1|Name=mRNA_P-wetherbeei_contig59124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MTAAARGFTIVEFMVAIAIGLIVSLVVGQIFVGSRQSFSSQEDSARMQEN
MRSASILLTRTIRLAGYPSNAGLNPNDIFPKASAPAITGVDNLT
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mRNA from alignment at P-wetherbeei_contig59124:214..498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59124.1.1 ID=mRNA_P-wetherbeei_contig59124.1.1|Name=mRNA_P-wetherbeei_contig59124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig59124:214..498+ (Phaeothamnion wetherbeei SAG_119_79)
GGCATGACCGCTGCTGCCCGCGGGTTCACGATCGTTGAATTCATGGTCGC GATTGCGATCGGGCTGATCGTTTCGCTGGTGGTGGGCCAGATTTTTGTCG GCTCACGCCAAAGCTTTTCCAGCCAGGAGGACTCCGCGCGCATGCAGGAG AACATGCGCTCCGCATCCATCCTGCTTACCCGAACGATCCGACTGGCGGG CTACCCTAGCAACGCAGGCCTGAATCCAAACGATATTTTTCCAAAGGCAT CGGCACCTGCCATCACCGGTGTGGACAATCTCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59124:214..498+

>mRNA_P-wetherbeei_contig59124.1.1 ID=mRNA_P-wetherbeei_contig59124.1.1|Name=mRNA_P-wetherbeei_contig59124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig59124:214..498+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGCTGCTGCCCGCGGGTTCACGATCGTTGAATTCATGGTCGCGAT
TGCGATCGGGCTGATCGTTTCGCTGGTGGTGGGCCAGATTTTTGTCGGCT
CACGCCAAAGCTTTTCCAGCCAGGAGGACTCCGCGCGCATGCAGGAGAAC
ATGCGCTCCGCATCCATCCTGCTTACCCGAACGATCCGACTGGCGGGCTA
CCCTAGCAACGCAGGCCTGAATCCAAACGATATTTTTCCAAAGGCATCGG
CACCTGCCATCACCGGTGTGGACAATCTCACC
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