mRNA_P-wetherbeei_contig58921.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58921.1.1
Unique NamemRNA_P-wetherbeei_contig58921.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: A0A261GJJ3_9GAMM (Carbon monoxide dehydrogenase maturation protein n=2 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GJJ3_9GAMM)

HSP 1 Score: 146 bits (368), Expect = 6.070e-40
Identity = 80/181 (44.20%), Postives = 103/181 (56.91%), Query Frame = 1
Query:    1 WRRDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTT--------------HVEADIRTIDTAAQWARVCEPSVRIWAVGKGPLVPLIAQLGSAAEF 501
            W  +G+R AL TLV +DGS+PRP GSQMA+REDG  VG ++GGC EAA++ E    L+ G NR +RYGKDSPY DIRLPCGSGIDV  D+ +S   L  VL     R P  L  D+E  T+              H + D+ T  +     RV  P+ R+ A G+G +   +  L  A  F
Sbjct:   11 WSAEGYRVALVTLVGIDGSSPRPLGSQMAVREDGRYVGLISGGCVEAALVHETLAALSDGRNRKLRYGKDSPYFDIRLPCGSGIDVLIDVGISSAILKAVLQYQQRREPVMLCVDVEAATSVQANPEQYLQLEPCHDQPDVATHISRDTLNRVYRPTTRVLAFGRGEIFRQLVNLAPAVGF 191          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: Q2SLM6_HAHCH (CO dehydrogenase maturation factor n=4 Tax=Hahella TaxID=158481 RepID=Q2SLM6_HAHCH)

HSP 1 Score: 144 bits (363), Expect = 3.300e-39
Identity = 81/178 (45.51%), Postives = 105/178 (58.99%), Query Frame = 1
Query:    1 WRRDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLE--------HLTTHVEADIRTIDTAA---QWARVCEPSVRIWAVGKGPLVPLIAQLGSAAEF 501
            W   G R AL TLV VDGS+PRP GSQMA+REDG+A+G ++GGC EAA+  EA   L  G NR++RYGKDSP+ DIRLPCGSGIDV  D+ +  D L  V +    R P  L  DLE        HL     + ++  D+ A   ++ RV  P+ R+ A G+G +   +  L  A  F
Sbjct:   17 WLAQGARVALITLVGVDGSSPRPLGSQMAVREDGVAIGLISGGCVEAALTHEAAAALADGRNRMLRYGKDSPFFDIRLPCGSGIDVLIDVNVGADLLFAVRDRQLQRQPTLLCMDLERAASGDGVHLQLEACSGMQASDSYANGDRFVRVYNPTTRLLAFGRGEIFRQLLMLTPAMGF 194          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: A0A0F5LWE2_9HYPH (Uncharacterized protein n=2 Tax=Devosia limi DSM 17137 TaxID=1121477 RepID=A0A0F5LWE2_9HYPH)

HSP 1 Score: 144 bits (362), Expect = 5.220e-39
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 1
Query:   13 GHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTTHVEAD-IRTIDTAAQWARVCEPSVRIWAVGKGPLVPLIAQLGSAAEF 501
            G R AL TLV VDGS+PRP GSQMA+ EDG A+GN+TGGCAEAAI+ EA   + + +NR +RYGK SPY DIRLPCGSGI+++ +  +  + +        AR P +LV D     + +E   + + +  A++ +  EP+ RI A+GKG ++  + QLG+ A F
Sbjct:   23 GMRVALVTLVEVDGSSPRPLGSQMAVAEDGSAIGNITGGCAEAAIVTEALVAIEAQSNRRIRYGKGSPYFDIRLPCGSGIEIYINARIDPELIMAAAERLQARQPVTLVQDTRAHRSWLETGPVVSPEAKAEYRKHYEPARRIVAIGKGAILGSLCQLGAMAGF 186          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: E8RTU7_ASTEC (Uncharacterized protein n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / KCTC 12464 / NCIMB 9791 / VKM B-1370 / CB 48) TaxID=573065 RepID=E8RTU7_ASTEC)

HSP 1 Score: 142 bits (357), Expect = 1.650e-38
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 1
Query:    1 WRRDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTTHVEADIRTIDTAAQWARVCEPSVRIWAVGKGPLVPLIAQLGSAAEF 501
            WRR+G +TAL TLV +DGS+PRP GSQ+A+ EDG AVG +TGGCAE A++ +A   +  G N + RYG+ S + DI LPCGSGI V FD+TLSD+ +A +  A   R  A  V+D                    + R+  P  R+  +G+GP+VP +AQ+   +EF
Sbjct:   23 WRREGLKTALLTLVAIDGSSPRPVGSQIAVAEDGRAVGAITGGCAEQALVRDALSAIARGCNHVERYGEGSRFRDIVLPCGSGISVAFDVTLSDEAVAGLRTARQQRREAVYVWD------------------GGFERLYRPQPRVLVMGQGPIVPFLAQMACLSEF 171          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: UPI0019D2E499 (XdhC family protein n=1 Tax=Pelagibacterium montanilacus TaxID=2185280 RepID=UPI0019D2E499)

HSP 1 Score: 141 bits (355), Expect = 4.360e-38
Identity = 75/168 (44.64%), Postives = 108/168 (64.29%), Query Frame = 1
Query:    7 RDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTTHVE---ADIRTIDTAAQWARVCEPSVRIWAVGKGPLVPLIAQLGSAAEF 501
            R G  TAL TLV +DGS+PRP GSQMA+ EDG AVGN+TGGCAEAAI+AEA   +  G +R VRYG+ SPY D+RLPCGSGI+++ ++++S   +  +  A   RAP +L+ ++    T ++   AD       + +AR   P  R+  +G+GP+V  +  L S  ++
Sbjct:    9 RAGKSTALVTLVAIDGSSPRPLGSQMAVCEDGTAVGNITGGCAEAAIVAEAVQAMDEGRDRRVRYGEGSPYFDVRLPCGSGIEIYINVSVSRATIEALDTAVVQRAPTTLIQNVSTGETELKPGSADCGFDPEGSLFARPFLPVPRLVVIGRGPVVTSLVHLASGLDW 176          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: A0A3S0RX55_HYPSQ (XdhC family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A3S0RX55_HYPSQ)

HSP 1 Score: 140 bits (353), Expect = 1.420e-37
Identity = 76/165 (46.06%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 WRRDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTTHVEADI------RTIDTAAQWARVCEPSVRIWAVGKGPLVPLIA 477
            W+ +G RTAL TLV VDG APR  G+QMA+ EDG  VG L+GGC EAA++ EAQ  + +G NR+VRYGK SPY D++LPCGSG+D++FD  L    + Q+L+  AAR   SL   L   T+ V + +      R+      + R   P +R+  +G GPL+  IA
Sbjct:   27 WQNEGLRTALVTLVGVDGGAPRQPGAQMAVAEDGSFVGYLSGGCLEAAVVLEAQAAIRAGENRLVRYGKGSPYFDVKLPCGSGLDLYFDQGLGAGQVRQLLSLRAARQACSLRTSLVDGTSIVASAVSQGPLPRSARDKEHFDRYYSPPLRLLLLGSGPLLNAIA 191          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: A0A218PNM8_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. GJ21 TaxID=113574 RepID=A0A218PNM8_9HYPH)

HSP 1 Score: 137 bits (344), Expect = 3.010e-36
Identity = 73/170 (42.94%), Postives = 104/170 (61.18%), Query Frame = 1
Query:    1 WRRDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTTHVEADI-----RTIDTAAQWARVCEPSVRIWAVGKGPLVPLIAQLGSAA 495
            W+ +G RTAL TLV V+G APR  G+QMA+ EDG   G L+GGC EAA++ EAQ  + +G NR++RYGK SPY D+RL CGSG+D++FD  L    + ++L+  A R  +SL   L   T+ V +       +++     + R   PSVR+  +G GPLV  IA +   +
Sbjct:   27 WQSEGQRTALVTLVGVEGGAPREPGAQMAVAEDGRFAGYLSGGCLEAAVVLEAQAVIRAGENRLIRYGKGSPYFDVRLSCGSGLDLYFDQGLGAAQVRELLHCRATRRASSLRTSLVDGTSIVTSGSSGTLPKSVRQGQYFTRHYPPSVRLLLLGSGPLVNAIAAMAKVS 196          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: A0A520XN83_9ACTN (XdhC family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XN83_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 2.710e-35
Identity = 76/165 (46.06%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    7 RDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTTHVEA-DIRTIDTAAQ-WARVCEPSVRIWAVGKGPLVPLIAQLGSAA 495
            R G +  LATLV +DGSAPRP GSQ+A+ +DG A G +TGGCAEA+I+AEA   +  G NR+VRYG+ SPY DI LPCGSGIDV+FD  +    +A +L     R P +L  ++ + T+     + R     AQ + R   P  +++  GKGP+VP +A L   A
Sbjct:   18 RSGCKMCLATLVGIDGSAPRPLGSQIAVADDGDAQGYITGGCAEASIVAEALRLIELGENRLVRYGEGSPYKDIALPCGSGIDVYFDTKIEPGLVAGILENLETRQPVALASNIANGTSQAAPYESRLPVLIAQIFTRPYVPHFQLFIAGKGPVVPALANLAHHA 182          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: A0A351CYZ9_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A351CYZ9_9GAMM)

HSP 1 Score: 132 bits (331), Expect = 1.580e-34
Identity = 70/167 (41.92%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    1 WRRDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTTHVEADIRTIDTAAQWARVCEPSVRIWAVGKGPLVPLIAQLGSAAEF 501
            W       AL TLV   GS+PR  GSQ+A+   G +VG+++GGCAE+AI+  A   +    N ++R+G+DSPY+DIRLPCGS IDVFF++ L  DD  Q+L+  A R+PA + F+L+  T+ +   I  +D  A +     P+ +I   G GP+VP +  L    EF
Sbjct:   15 WLSQEEDVALVTLVATLGSSPRRVGSQIAVSGAGDSVGSISGGCAESAIVELALEAIGKQENNLIRFGEDSPYLDIRLPCGSSIDVFFEVGLGHDDFTQILDKMAIRSPAYMAFNLQDRTSQLVEQI--VD--ADYLHTYHPTTQIVVAGNGPIVPALVGLCDLLEF 177          
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Match: F8J6M7_HYPSM (Uncharacterized protein n=2 Tax=Hyphomicrobium TaxID=81 RepID=F8J6M7_HYPSM)

HSP 1 Score: 131 bits (330), Expect = 4.120e-34
Identity = 72/172 (41.86%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 WRRDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAIIAEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQVLNANAARAPASLVFDLEHLTTHVEADIRTIDTAAQ-----WARVCEPSVRIWAVGKGPLVPLIAQLGSAAEF 501
            WRR G + AL TLV ++G +PR  GS MA+  +G  VG L+GGC E+A+  EAQ C+  G N++VRYG+ SPY D++LPCGSGIDVF D    D  + +++ AN  R   S V +LE   + V+     ++ A+Q     + R   P+V++  +G GP +  IA L S+  F
Sbjct:   34 WRRMGLKCALVTLVNIEGGSPRALGSMMAVSSEGHYVGYLSGGCLESAVAMEAQLCIRDGQNKLVRYGRGSPYFDVQLPCGSGIDVFIDQAPDDRIIERLMEANRNREFVSHVTNLETGESQVDRLPGALEIASQRDGPFFRRTVIPTVKVHLIGAGPSMAAIAHLLSSIGF 205          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58921.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A261GJJ3_9GAMM6.070e-4044.20Carbon monoxide dehydrogenase maturation protein n... [more]
Q2SLM6_HAHCH3.300e-3945.51CO dehydrogenase maturation factor n=4 Tax=Hahella... [more]
A0A0F5LWE2_9HYPH5.220e-3946.34Uncharacterized protein n=2 Tax=Devosia limi DSM 1... [more]
E8RTU7_ASTEC1.650e-3844.31Uncharacterized protein n=1 Tax=Asticcacaulis exce... [more]
UPI0019D2E4994.360e-3844.64XdhC family protein n=1 Tax=Pelagibacterium montan... [more]
A0A3S0RX55_HYPSQ1.420e-3746.06XdhC family protein n=1 Tax=Hyphomicrobium sp. Tax... [more]
A0A218PNM8_9HYPH3.010e-3642.94Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A520XN83_9ACTN2.710e-3546.06XdhC family protein n=2 Tax=Bacteria TaxID=2 RepID... [more]
A0A351CYZ9_9GAMM1.580e-3441.92Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
F8J6M7_HYPSM4.120e-3441.86Uncharacterized protein n=2 Tax=Hyphomicrobium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58921contigP-wetherbeei_contig58921:1..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog349521.HCH_01591
PFAMsXdhC_C,XdhC_CoxI
Model size501
Max annot lvl135619|Oceanospirillales
KEGG koko:K07402
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.41e-40
EggNOG OGsCOG1975@1|root,COG1975@2|Bacteria,1MXKU@1224|Proteobacteria,1RQRT@1236|Gammaproteobacteria,1XPQ5@135619|Oceanospirillales
DescriptionXdhC and CoxI family
Cds size501
COG categoryO
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.4722116-CDS-P-wetherbeei_contig58921:0..5011683186871.4722116-CDS-P-wetherbeei_contig58921:0..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58921 1..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58921.1.1prot_P-wetherbeei_contig58921.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58921 1..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58921.1.1

>prot_P-wetherbeei_contig58921.1.1 ID=prot_P-wetherbeei_contig58921.1.1|Name=mRNA_P-wetherbeei_contig58921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
WRRDGHRTALATLVFVDGSAPRPRGSQMAIREDGMAVGNLTGGCAEAAII
AEAQHCLTSGANRIVRYGKDSPYIDIRLPCGSGIDVFFDITLSDDDLAQV
LNANAARAPASLVFDLEHLTTHVEADIRTIDTAAQWARVCEPSVRIWAVG
KGPLVPLIAQLGSAAEF
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mRNA from alignment at P-wetherbeei_contig58921:1..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58921.1.1 ID=mRNA_P-wetherbeei_contig58921.1.1|Name=mRNA_P-wetherbeei_contig58921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58921:1..501+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCGTCGGGATGGACATCGTACCGCGCTCGCGACCCTGGTCTTCGTCGA TGGCTCGGCGCCGCGACCGCGCGGCAGCCAGATGGCGATACGGGAAGACG GCATGGCGGTCGGCAATCTCACCGGCGGCTGTGCGGAAGCAGCCATCATC GCTGAAGCCCAACACTGCCTCACGAGTGGCGCCAATCGAATCGTGCGTTA CGGCAAGGACTCGCCCTATATCGATATTCGCCTGCCCTGCGGCTCGGGCA TCGATGTATTCTTCGACATCACCCTCAGTGACGACGATCTTGCGCAGGTC TTGAATGCCAATGCGGCACGCGCACCGGCCTCGCTGGTGTTTGATCTCGA ACACCTTACTACGCACGTTGAAGCCGACATACGCACTATTGATACGGCCG CACAGTGGGCGCGCGTCTGCGAACCGAGTGTGCGGATCTGGGCGGTAGGC AAAGGTCCGCTGGTACCACTGATCGCACAGCTCGGCAGCGCTGCGGAATT T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58921:1..501+

>mRNA_P-wetherbeei_contig58921.1.1 ID=mRNA_P-wetherbeei_contig58921.1.1|Name=mRNA_P-wetherbeei_contig58921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58921:1..501+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCGTCGGGATGGACATCGTACCGCGCTCGCGACCCTGGTCTTCGTCGA
TGGCTCGGCGCCGCGACCGCGCGGCAGCCAGATGGCGATACGGGAAGACG
GCATGGCGGTCGGCAATCTCACCGGCGGCTGTGCGGAAGCAGCCATCATC
GCTGAAGCCCAACACTGCCTCACGAGTGGCGCCAATCGAATCGTGCGTTA
CGGCAAGGACTCGCCCTATATCGATATTCGCCTGCCCTGCGGCTCGGGCA
TCGATGTATTCTTCGACATCACCCTCAGTGACGACGATCTTGCGCAGGTC
TTGAATGCCAATGCGGCACGCGCACCGGCCTCGCTGGTGTTTGATCTCGA
ACACCTTACTACGCACGTTGAAGCCGACATACGCACTATTGATACGGCCG
CACAGTGGGCGCGCGTCTGCGAACCGAGTGTGCGGATCTGGGCGGTAGGC
AAAGGTCCGCTGGTACCACTGATCGCACAGCTCGGCAGCGCTGCGGAATT
T
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