mRNA_P-wetherbeei_contig58870.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58870.1.1
Unique NamemRNA_P-wetherbeei_contig58870.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A6I1J9B0_9HYPH (Uncharacterized protein n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A6I1J9B0_9HYPH)

HSP 1 Score: 57.0 bits (136), Expect = 6.060e-9
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    7 TLSIFNSIWWSQTGSNRRPHACKARALPAELWP 105
            T+ +  S+WWSQ GSNRRP AC A ALPAELWP
Sbjct:   36 TIRLGASVWWSQAGSNRRPLACHASALPAELWP 68          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A8J4VFY4_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VFY4_9ROSI)

HSP 1 Score: 55.5 bits (132), Expect = 4.780e-8
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 1
Query:   31 WWSQTGSNRRPHACKARALPAELWP 105
            WW QTGSNRRPHACKARALPAEL P
Sbjct:  197 WWRQTGSNRRPHACKARALPAELCP 221          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A218PLN4_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. GJ21 TaxID=113574 RepID=A0A218PLN4_9HYPH)

HSP 1 Score: 52.0 bits (123), Expect = 7.460e-8
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2
Query:   32 GGARRDRTDDLMLAKHALSQLSYG 103
            GGARRDRTDDLMLAKHALSQLSYG
Sbjct:   17 GGARRDRTDDLMLAKHALSQLSYG 40          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A7U6Y4X3_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium LM-1 TaxID=2682548 RepID=A0A7U6Y4X3_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 9.870e-8
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = -3
Query:   32 AIAQLGERVLCKHEVVGSIPSGST 103
            A+AQLGERVLCKHEVVGSIPSGST
Sbjct:   10 AVAQLGERVLCKHEVVGSIPSGST 33          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A183CP88_GLOPA (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A183CP88_GLOPA)

HSP 1 Score: 53.1 bits (126), Expect = 2.760e-7
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 2
Query:   14 RSSIPSGGARRDRTDDLMLAKHALSQLSYG 103
            R    +GGARRDRTDDLMLAKHALSQLSYG
Sbjct:   72 RQPAKAGGARRDRTDDLMLAKHALSQLSYG 101          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A653Y6M5_9BURK (Uncharacterized protein n=1 Tax=Massilia sp. 9I TaxID=2653152 RepID=A0A653Y6M5_9BURK)

HSP 1 Score: 49.7 bits (117), Expect = 5.950e-7
Identity = 22/28 (78.57%), Postives = 22/28 (78.57%), Query Frame = 1
Query:   22 NSIWWSQTGSNRRPHACKARALPAELWP 105
            NS WW  TGSNRRP ACKA ALPAEL P
Sbjct:   45 NSNWWRMTGSNRRPPACKAGALPAELIP 72          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A8J4V8U4_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V8U4_9ROSI)

HSP 1 Score: 52.4 bits (124), Expect = 6.480e-7
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 2
Query:   29 SGGARRDRTDDLMLAKHALSQLSYG 103
            +GGARRDRTDDLMLAKHALSQLSYG
Sbjct:  175 NGGARRDRTDDLMLAKHALSQLSYG 199          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A1Q9C0X1_SYMMI (Uncharacterized protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C0X1_SYMMI)

HSP 1 Score: 52.4 bits (124), Expect = 7.080e-7
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 2
Query:   29 SGGARRDRTDDLMLAKHALSQLSYG 103
            +GGARRDRTDDLMLAKHALSQLSYG
Sbjct:  204 TGGARRDRTDDLMLAKHALSQLSYG 228          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: B1N6K1_9PROT (Uncharacterized protein n=1 Tax=uncultured beta proteobacterium CBNPD1 BAC clone 578 TaxID=417305 RepID=B1N6K1_9PROT)

HSP 1 Score: 48.1 bits (113), Expect = 5.190e-6
Identity = 21/31 (67.74%), Postives = 22/31 (70.97%), Query Frame = 1
Query:   13 SIFNSIWWSQTGSNRRPHACKARALPAELWP 105
            S+    WW  TGSNRRP ACKA ALPAEL P
Sbjct:   26 SVVTLRWWRMTGSNRRPPACKAGALPAELIP 56          
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Match: A0A2N9AVJ8_METEX (Uncharacterized protein n=1 Tax=Methylorubrum extorquens TaxID=408 RepID=A0A2N9AVJ8_METEX)

HSP 1 Score: 47.8 bits (112), Expect = 5.310e-6
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:   31 WWSQTGSNRRPHACKARALPAELWP 105
            WW +TGSNRRP ACKA ALPAEL P
Sbjct:   39 WWRRTGSNRRPDACKATALPAELRP 63          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58870.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I1J9B0_9HYPH6.060e-969.70Uncharacterized protein n=1 Tax=Xanthobacteraceae ... [more]
A0A8J4VFY4_9ROSI4.780e-892.00Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
A0A218PLN4_9HYPH7.460e-8100.00Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A7U6Y4X3_9PROT9.870e-895.83Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A183CP88_GLOPA2.760e-783.33Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A653Y6M5_9BURK5.950e-778.57Uncharacterized protein n=1 Tax=Massilia sp. 9I Ta... [more]
A0A8J4V8U4_9ROSI6.480e-796.00Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
A0A1Q9C0X1_SYMMI7.080e-796.00Uncharacterized protein (Fragment) n=1 Tax=Symbiod... [more]
B1N6K1_9PROT5.190e-667.74Uncharacterized protein n=1 Tax=uncultured beta pr... [more]
A0A2N9AVJ8_METEX5.310e-680.00Uncharacterized protein n=1 Tax=Methylorubrum exto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58870contigP-wetherbeei_contig58870:135..239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog981223.AIED01000149_gene464
Model size105
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.21e-05
EggNOG OGs2EJ6D@1|root,33CXK@2|Bacteria,1NHGW@1224|Proteobacteria,1SGZR@1236|Gammaproteobacteria,3NQBV@468|Moraxellaceae
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.6099145-CDS-P-wetherbeei_contig58870:134..2391683186870.6099145-CDS-P-wetherbeei_contig58870:134..239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58870 135..239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58870.1.1prot_P-wetherbeei_contig58870.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58870 135..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58870.1.1

>prot_P-wetherbeei_contig58870.1.1 ID=prot_P-wetherbeei_contig58870.1.1|Name=mRNA_P-wetherbeei_contig58870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=35bp
QGTLSIFNSIWWSQTGSNRRPHACKARALPAELWP
back to top

mRNA from alignment at P-wetherbeei_contig58870:135..239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58870.1.1 ID=mRNA_P-wetherbeei_contig58870.1.1|Name=mRNA_P-wetherbeei_contig58870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=105bp|location=Sequence derived from alignment at P-wetherbeei_contig58870:135..239- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCACTTTGTCGATCTTCAATTCCATCTGGTGGAGCCAGACGGGATC GAACCGACGACCTCATGCTTGCAAAGCACGCGCTCTCCCAGCTGAGCTAT GGCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58870:135..239-

>mRNA_P-wetherbeei_contig58870.1.1 ID=mRNA_P-wetherbeei_contig58870.1.1|Name=mRNA_P-wetherbeei_contig58870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=105bp|location=Sequence derived from alignment at P-wetherbeei_contig58870:135..239- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCACTTTGTCGATCTTCAATTCCATCTGGTGGAGCCAGACGGGATC
GAACCGACGACCTCATGCTTGCAAAGCACGCGCTCTCCCAGCTGAGCTAT
GGCCC
back to top