mRNA_P-wetherbeei_contig5853.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5853.1.1
Unique NamemRNA_P-wetherbeei_contig5853.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A836CIM9_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIM9_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.190e-55
Identity = 87/135 (64.44%), Postives = 107/135 (79.26%), Query Frame = 1
Query:   13 GKIIDLIRADQ---KPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLV 408
             KI DLI A Q   KPF SLE+FPPR+ +GV NLR+R+ R+    P F+DFTWGAGG+TA+LTL L LE K   GL  NMH+TCTNMP+ KID+ALQACR++G+ NIVALRGDPPAG+++W+A+EGG  CALDLV
Sbjct:   14 SKISDLIAAAQELRKPFVSLEFFPPRTVAGVVNLRERIQRLKRVAPFFIDFTWGAGGNTADLTLDLVLEAKLEHGLEPNMHLTCTNMPVLKIDNALQACREHGVRNIVALRGDPPAGENQWLASEGGFKCALDLV 148          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A6H5JB66_9PHAE (Methylenetetrahydrofolate reductase (NAD(P)H) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB66_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 8.540e-55
Identity = 90/144 (62.50%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    4 EHDGKIIDLIRADQKP--------FSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLVK 411
            E D KII LI+A  K         F SLE+FPPR+++GV+NL +RL RM  T PLFVDFTWGAGGSTAELTL LT   K+  GL  NMH+TCTNMP++KID AL  C+++GI NIVALRGDPP G   W A EGG +CALDLVK
Sbjct:    4 EPDTKIIKLIQASAKEALTEGGAGFQSLEFFPPRTDTGVKNLMERLGRMKATKPLFVDFTWGAGGSTAELTLDLTTRTKKEHGLVPNMHLTCTNMPVDKIDHALAQCKEHGIRNIVALRGDPPTGSDTWEATEGGFSCALDLVK 147          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A7S1C6C6_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6C6_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.620e-54
Identity = 88/146 (60.27%), Postives = 106/146 (72.60%), Query Frame = 1
Query:   16 KIIDLIRADQ--------------KPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLVK 411
            K+I+ IRA Q              KPF + EY+PPR++ GV NL  RL RMA  +PL+VDFTWGAGGSTA+LTL LT+E K+R GL  NMH+TCTNMP+EKI  AL+  +  GITNIVALRGDPPAG+++W A EGG  CALDLVK
Sbjct:    3 KLIEKIRAHQAAAGEETKDGEPTGKPFIAFEYYPPRTDDGVANLYKRLGRMAQQEPLYVDFTWGAGGSTADLTLELTVESKKRFGLEPNMHLTCTNMPVEKITTALEGAKAAGITNIVALRGDPPAGEAKWEAVEGGFACALDLVK 148          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A836C869_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C869_9STRA)

HSP 1 Score: 180 bits (456), Expect = 6.700e-53
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 1
Query:   10 DGKIIDLIRADQ-----------KPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLV 408
            D K++D+I A             KP   LE+FPPR+  GV NLR+RL R+    P+F DFTWGAGGSTA+LTL LTLE K   GLR NMH+TCTNMP+E+I+ AL+ CR+ G+TNIVALRGDPPAG   W  +EGGL CALDLV
Sbjct:    8 DEKVVDVIAAASEGAFNDAGECVKPLVGLEFFPPRTTQGVDNLRERLQRLKKVGPVFADFTWGAGGSTADLTLDLTLEAKHAHGLRPNMHLTCTNMPLERIESALRRCREEGVTNIVALRGDPPAGADHWERSEGGLGCALDLV 151          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A7S3RLW6_9SPIT (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RLW6_9SPIT)

HSP 1 Score: 168 bits (426), Expect = 3.710e-51
Identity = 78/134 (58.21%), Postives = 93/134 (69.40%), Query Frame = 1
Query:   10 DGKIIDLIRADQKPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLVK 411
            D KI DLI   +  + S EYFPPR++ GV+NLR R+ RM   +P+F DFTWGAGGST+ELTL LT   K   G  ANMH+TCTN   E + DAL  C++ G+ NIVALRGDPP G  +W A EGG  CALDLVK
Sbjct:    6 DKKISDLIATTKPGWFSFEYFPPRTDEGVENLRKRIVRMKNLNPMFTDFTWGAGGSTSELTLTLTSAAKNEYGCVANMHLTCTNQKAEMVGDALTKCKELGVRNIVALRGDPPRGSEKWEATEGGFNCALDLVK 139          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: W7TUD6_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUD6_9STRA)

HSP 1 Score: 175 bits (443), Expect = 7.780e-51
Identity = 83/138 (60.14%), Postives = 104/138 (75.36%), Query Frame = 1
Query:    1 MEHD--GKIIDLIRADQKPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLV 408
            ME D  G++++  +    P+ S E+FPP++  GV+ L +RLA MA  +PLFVDFTWGAGGSTAELTL LT+E +RR GL ANMH+TCTNMP EK+ DAL++ +D GITNI+ALRGDPP GQ  W   EGG + ALDLV
Sbjct:   13 MEDDRIGELLEQRKGHPTPWFSFEFFPPKTPEGVEKLYERLAEMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLIANMHLTCTNMPTEKVVDALKSAKDAGITNILALRGDPPVGQERWEPIEGGFSSALDLV 150          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A6V1V0A8_HETAK (Methylenetetrahydrofolate reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V0A8_HETAK)

HSP 1 Score: 176 bits (446), Expect = 3.720e-49
Identity = 81/138 (58.70%), Postives = 104/138 (75.36%), Query Frame = 1
Query:   10 DGKIIDLIRADQ----KPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLVK 411
            +GK I L+  ++    KPF SLE+FPP++  GV+NL +R+ RM   DPLFVDFTWGAGGST+ELTL L+L+ ++ +G++ANMH+TCTNM   K+D AL+ C+  GI NI+ALRGDPP GQ  W A EGG  CALDLVK
Sbjct:    3 EGKKISLMAEERAREGKPFVSLEFFPPKTAKGVENLVERIQRMKSIDPLFVDFTWGAGGSTSELTLDLSLKAQQEIGVQANMHLTCTNMEAAKVDAALEGCKRGGIRNILALRGDPPEGQEAWEATEGGFACALDLVK 140          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A7R9WQJ7_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQJ7_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.240e-49
Identity = 87/143 (60.84%), Postives = 103/143 (72.03%), Query Frame = 1
Query:   10 DGKIIDLIRADQ---KPFSSLEYFPPRSESGVQNLRDRLARMA-LTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNM-----PIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLVK 411
            D KIIDL++ ++   KP  S+E+FPPR+E GV+NL  R+ RM    DPLF D TWGAGGSTAELTL L+    R+ G  +NMH+TCTNM     P + + DALQ  +DNGI NIVALRGDPPAGQ EW AAEGG  CALDLVK
Sbjct:    8 DTKIIDLLKQNKDESKPKISIEFFPPRTEVGVKNLHARMDRMKNAIDPLFTDMTWGAGGSTAELTLDLSAH-SRKAGHVSNMHLTCTNMEKDGDPKKAVHDALQTAQDNGIRNIVALRGDPPAGQDEWKAAEGGFACALDLVK 149          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A7S1ALW9_NOCSC (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ALW9_NOCSC)

HSP 1 Score: 164 bits (415), Expect = 1.390e-48
Identity = 76/134 (56.72%), Postives = 96/134 (71.64%), Query Frame = 1
Query:   10 DGKIIDLIRADQKPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLVK 411
            D  + +L+ A +  + S EYFPPR+E GV+NL  R+ RM   DPLF+DFTWGAGGST++LT+ L  + K   G  ANMH+TCTNM  +K+D AL  C+  GI N+VALRGDPP G+ +W A EGG TCALDLVK
Sbjct:    9 DSMLNELMSARKDTWYSFEYFPPRTEEGVKNLYKRILRMKTLDPLFLDFTWGAGGSTSDLTMQLCDKVKNEFGAVANMHLTCTNMEKDKVDVALADCKKFGICNLVALRGDPPRGEDKWEATEGGFTCALDLVK 142          
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Match: A0A7S0A5S6_9DINO (Methylenetetrahydrofolate reductase (Fragment) n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A5S6_9DINO)

HSP 1 Score: 168 bits (426), Expect = 6.790e-48
Identity = 79/134 (58.96%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   10 DGKIIDLIRADQKPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFVDFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQACRDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLVK 411
            D KI DL+      + S EYFPP++E GVQ LR+R+ RM    PLF DFTWGAGGST+ELTL LT   K   G  ANMH+TCTN   E   +AL AC+  G+ NIVALRGDPP G  +W A EGG TCALDLVK
Sbjct:    8 DAKIADLVAKASPGWFSFEYFPPKTEEGVQKLRNRIVRMKALKPLFTDFTWGAGGSTSELTLQLTSAAKNEFGCVANMHLTCTNQKSEMCGEALDACKAVGVRNIVALRGDPPRGHEKWTAIEGGFTCALDLVK 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIM9_9STRA1.190e-5564.44Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A6H5JB66_9PHAE8.540e-5562.50Methylenetetrahydrofolate reductase (NAD(P)H) n=2 ... [more]
A0A7S1C6C6_9STRA2.620e-5460.27Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A836C869_9STRA6.700e-5359.03Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S3RLW6_9SPIT3.710e-5158.21Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
W7TUD6_9STRA7.780e-5160.14Methylenetetrahydrofolate reductase (NAD(P)H) n=2 ... [more]
A0A6V1V0A8_HETAK3.720e-4958.70Methylenetetrahydrofolate reductase n=1 Tax=Hetero... [more]
A0A7R9WQJ7_9STRA4.240e-4960.84Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A7S1ALW9_NOCSC1.390e-4856.72Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A7S0A5S6_9DINO6.790e-4858.96Methylenetetrahydrofolate reductase (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5853contigP-wetherbeei_contig5853:212..1203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCN9
PFAMsMTHFR
Model size414
Max annot lvl2759|Eukaryota
KEGG rclassRC00081
KEGG koko:K00297
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523
KEGG ModuleM00377
Hectar predicted targeting categoryother localisation
Exons3
Evalue8e-58
EggNOG OGsCOG0685@1|root,KOG0564@2759|Eukaryota
EC1.5.1.20
Descriptionmethylenetetrahydrofolate reductase (NAD(P)H) activity
Cds size414
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.5597808-CDS-P-wetherbeei_contig5853:211..3081683186866.5597808-CDS-P-wetherbeei_contig5853:211..308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5853 212..308 -
1683186866.569293-CDS-P-wetherbeei_contig5853:558..7851683186866.569293-CDS-P-wetherbeei_contig5853:558..785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5853 559..785 -
1683186866.5773292-CDS-P-wetherbeei_contig5853:1113..12031683186866.5773292-CDS-P-wetherbeei_contig5853:1113..1203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5853 1114..1203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5853.1.1prot_P-wetherbeei_contig5853.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5853 212..1203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5853.1.1

>prot_P-wetherbeei_contig5853.1.1 ID=prot_P-wetherbeei_contig5853.1.1|Name=mRNA_P-wetherbeei_contig5853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MEHDGKIIDLIRADQKPFSSLEYFPPRSESGVQNLRDRLARMALTDPLFV
DFTWGAGGSTAELTLGLTLECKRRLGLRANMHVTCTNMPIEKIDDALQAC
RDNGITNIVALRGDPPAGQSEWVAAEGGLTCALDLVK*
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mRNA from alignment at P-wetherbeei_contig5853:212..1203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5853.1.1 ID=mRNA_P-wetherbeei_contig5853.1.1|Name=mRNA_P-wetherbeei_contig5853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=992bp|location=Sequence derived from alignment at P-wetherbeei_contig5853:212..1203- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCATGACGGGAAGATCATCGATCTGATCCGGGCAGACCAGAAGCC CTTCTCTTCTTTGGAATATTTTCCACCAAGGTCCGAATCGGTGAGTGCGA ATCCAGCCCAGGAGCGCTTTCGTGCGAATCCTTTTTGTGGTCTCAATTGA AACTGCGAATTGTGCTGTTTGGGGCGCGTTATTCCAACAATGGTCAACAT TGGAAGGACTCATGTTGCTCATTGGTGCACCTGGAAGGGATGCTGACGCG AGATGTTGCCAAAAGCAAAAAGAGGATCTTTAATGTGGCCAACAGTCATT TGAGACTTGCCCTGGCCTTCTTACTCGTCGCCCCACTGGAAACGGGCGTT CATTCTTCCGTTCGTCCTACCTCATTCCCACCCTCCGTCGATTCTTTCAT TCCAAACGAACGAGACAGGGCGTCCAAAACCTACGGGACCGTCTGGCCCG CATGGCCCTCACGGACCCACTCTTCGTCGACTTCACATGGGGCGCCGGCG GCAGCACGGCGGAGCTGACGCTGGGCCTCACGCTCGAGTGCAAGCGGCGG CTCGGGCTGCGGGCGAACATGCACGTGACGTGCACCAACATGCCCATCGA AAAGATTGACGACGCATTGCAGGCCTGCCGCGACAATGGCATCACGTGAG TTATTCGGTTTGGGTTTGATTAGAGTTACCTCTCCAAGATTTGTCGCACT GGCAATTTTCTTGCTTGAGATCCAAAAAACTGAAGTTAAATCGGGTTTGT CAAACTTCTGCTGAGCTTTCTGAAGAATCTTTTGGTGTTTTCGTTCCACG TTCCTTTTGTCGGCTGTTTGGTTCAGGGCTGCCCTTTTATTAATGGGTTA TTATCTGCTGCAGCAATCTCGTTGCCGCTGGTTGCATCTCTGCAGGAACA TTGTGGCGCTGCGGGGGGACCCGCCGGCGGGTCAATCGGAGTGGGTGGCG GCCGAAGGCGGCCTCACCTGCGCCCTCGATCTCGTCAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5853:212..1203-

>mRNA_P-wetherbeei_contig5853.1.1 ID=mRNA_P-wetherbeei_contig5853.1.1|Name=mRNA_P-wetherbeei_contig5853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig5853:212..1203- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCATGACGGGAAGATCATCGATCTGATCCGGGCAGACCAGAAGCC
CTTCTCTTCTTTGGAATATTTTCCACCAAGGTCCGAATCGGGCGTCCAAA
ACCTACGGGACCGTCTGGCCCGCATGGCCCTCACGGACCCACTCTTCGTC
GACTTCACATGGGGCGCCGGCGGCAGCACGGCGGAGCTGACGCTGGGCCT
CACGCTCGAGTGCAAGCGGCGGCTCGGGCTGCGGGCGAACATGCACGTGA
CGTGCACCAACATGCCCATCGAAAAGATTGACGACGCATTGCAGGCCTGC
CGCGACAATGGCATCACGAACATTGTGGCGCTGCGGGGGGACCCGCCGGC
GGGTCAATCGGAGTGGGTGGCGGCCGAAGGCGGCCTCACCTGCGCCCTCG
ATCTCGTCAAGTGA
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