mRNA_P-wetherbeei_contig585.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE) HSP 1 Score: 107 bits (267), Expect = 6.410e-23 Identity = 81/232 (34.91%), Postives = 111/232 (47.84%), Query Frame = 2
Query: 158 TEENAVVSTMPHPPDYFKLFWSTKRKGAVPAAELAAEDGVGTDAKCAT---SXXXXXXXXXXXXXXXXXXXXGDGETYTVFGTTYTNEFRIEDLLPKEKLLFLHGDAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEERRMVARLESEMERAIAAIETA 844
TEE VV +P PP Y+KLF P A L +D VG A A S G GETY +FG Y++E ++LLP EK++ P SG +++R ++ LL SIMANY Q +++LV P +K+ D+E LFVNFHSLLNRYR HQAR + R+R Q E +++ LE+ M + +A E+A
Sbjct: 3 TEEAKVVDAVPPPPAYYKLF--------SPGASLTGQD-VGASAAIAAPGDSAGGAGGTAPNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVV--------------PASG----------------QAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESA 195
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.310e-22 Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 2
Query: 377 TYTVFGTTYTNEFRIEDLLPKEKLLFLHGDAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEERRMVARLESEMERAIAAIE 838
+Y FG Y+ E I L+P EK L D D +R EMQ+LL SIMANY QLLD+L+ CP+ Q +KV++LE LFVNFHS+LN++R HQARE + R+++Q +E++ +A LES+ME +E
Sbjct: 37 SYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRN-----------------------------FRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQMEAVRQVVE 161
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 9.670e-17 Identity = 73/246 (29.67%), Postives = 112/246 (45.53%), Query Frame = 2
Query: 161 EENA----VVSTMPHPPDYFKLFWSTKRKGAVPAAELAAEDGVGTDAKCATSXXXXXXXXXXXXXXXXXXXXGDGETYTVFGTTYTNEFRIEDLLPKE-KLLFLHGDAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEE-------RRMVARLESEMERAIAAIETAGRDLLL 862
EENA +VS P PP +F L+ P A +A Y +FGT Y+ + + DLLP + K L+L S T A A ++Y+ ++++L S++AN QLLDVL+R P + +KVDDLELLFVN H+L+N++R HQARE + +R Q+ E+ RR++ ++ERA +A++ + L+
Sbjct: 4 EENASGPEIVSEFPPPPAFFSLYQIDDVNAPAPPAPMAPN-------------------------------------YHMFGTPYSTKDVVPDLLPDDSKKLYL-----------------------SDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIESREQVERAHSALDVDNQPALM 189
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 3.030e-15 Identity = 56/153 (36.60%), Postives = 82/153 (53.59%), Query Frame = 2
Query: 386 VFGTTYTNEFRIEDLLPKEKLLFLHGDAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEERRMVARLESEMERAIAAIETA 844
+FG Y++E ++LLP EK++ P SG +++R E++ LL SIMANY Q +++LV P +K+ D+E LFVNFHSLLNRYR HQAR + R+R Q E +++ LE+ M + +A E A
Sbjct: 1 MFGMPYSSEPVEQELLPPEKIVV--------------PASG----------------QAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGA 123
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: H3GJZ4_PHYRM (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJZ4_PHYRM) HSP 1 Score: 84.0 bits (206), Expect = 3.650e-14 Identity = 53/182 (29.12%), Postives = 93/182 (51.10%), Query Frame = 2
Query: 377 TYTVFGTTYTNEFRIEDLLPKEKLLFLHGDAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEERRMVARLESEMERAIAAIETAGRDLLLGCPAGGDDSGVRPAAAGADV 922
TY +FG+ Y+ + + DLLP +KL G+ D ++ ++Y+ EM+++ S++AN+ +L+DVL++ P + +K+DD+ELLF+N H+L+N +R HQARE + ++ QV E R + ++ + A+E +L G PA + DV
Sbjct: 183 TYHMFGSPYSTQDVVPDLLPGKKLYAPAGEEGDEDAP-------------------------VDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINSFRPHQARETVIQMLKTQVQERRDAARDIRRTIDESRQAVERVHGELHESTDDAAAADGAAPAGSDEDV 339
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: A0A024GGG9_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGG9_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.700e-14 Identity = 74/261 (28.35%), Postives = 115/261 (44.06%), Query Frame = 2
Query: 113 LHFQTRHLFAEKAK-----MTEENA-----VVSTMPHPPDYFKLFWSTKRKGAVPAAELAAEDGVGTDAKCATSXXXXXXXXXXXXXXXXXXXXGDGETYTVFGTTYTNEFRIEDLLPKE-KLLFLHG-DAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEE-------RRMVARLESEMERAIAAIE 838
LH +F K K MT+E +VS P PP +F L+ +P A +A Y +FGT Y+ + + DLLP + K L+L D + S ++Y+ ++++L S++AN QLLDVL+R P L +KVDDLELLFVN H+L+N++R HQARE + ++ Q+ E+ RR++ ++ERA +A++
Sbjct: 5 LHIIINVIFTLKYKPLLIAMTDEETSAGPEIVSEFPPPPAFFSLYQVNNADAPLPPAPMAPN-------------------------------------YHMFGTPYSTKDIVPDLLPDDSKKLYLPTLSTQDPKEQS------------------------IDYKAQLKKLNRSLLANCIQLLDVLIRNPKLFNEKVDDLELLFVNMHNLINKFRPHQAREHIILMLQSQIEEKQAAISDFRRVLEESREQVERAHSALD 204
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: A0A6G0XE19_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE19_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 3.780e-14 Identity = 65/239 (27.20%), Postives = 99/239 (41.42%), Query Frame = 2
Query: 155 MTEENAVVSTMPHPPDYFKLFWSTKRKGAVPAAELAAEDGVGTDAKCATSXXXXXXXXXXXXXXXXXXXXGDGETYTVFGTTYTNEFRIEDLLPKEKLLFLHGDAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEERRMVARLESEMERAIAAIETAGRDLLLGCP 871
M++E +VS P PP +F L+ G P A L TY FGT Y+ E + DLLP +K L+ + + EM+++ S+M ++ +L+DVLV PT K+DD+ELLF+N H+L+N YR HQARE L ++QQ+ + + A + +E + AA+ A L + P
Sbjct: 1 MSDEPELVSAFPAPPAFFNLYADGVDAGPAPPAPLKP-------------------------------------TYHSFGTPYSTEDTVPDLLPDDKKLYEPTH---------------------------------DVKEEMKKVNRSLMFSFLELIDVLVMNPTKFNAKLDDIELLFLNMHNLINAYRPHQARETLIELLKQQIQDRKDAAAEIRRTIEESKAAVLAAHSALDVETP 169
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: G4ZE03_PHYSP (Mediator of RNA polymerase II transcription subunit 7 (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZE03_PHYSP) HSP 1 Score: 82.0 bits (201), Expect = 6.570e-14 Identity = 56/184 (30.43%), Postives = 94/184 (51.09%), Query Frame = 2
Query: 377 TYTVFGTTYTNEFRIEDLLPK--EKLLFLHGDAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEERRMVARLESEMERAIAAIETAGRDLLLGCPAGGDDSGVRPAAAGADV 922
TY +FG+ Y+ + + DLLP+ +KL GD D AV ++Y+ +M+++ S++AN+ +L+DVL++ PT+ +K+DD+ELLF+N H+L+N +R HQARE + ++ QV E R + ++ + A+E +L G PA DV
Sbjct: 96 TYHMFGSPYSTQDVVPDLLPQPGKKLYAPEGDEGDA----------------------AV----VDYKAQMKKINRSLLANFVELVDVLIKKPTMFNEKLDDIELLFLNMHNLINAFRPHQARETVIQMLKTQVQERRDAARDIRRTIDESRLAVERVHGELHESTDDAAAADGASPAGTDEDV 253
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: A0A6A3XWY7_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XWY7_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.000e-13 Identity = 56/184 (30.43%), Postives = 94/184 (51.09%), Query Frame = 2
Query: 377 TYTVFGTTYTNEFRIEDLLPK--EKLLFLHGDAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEERRMVARLESEMERAIAAIETAGRDLLLGCPAGGDDSGVRPAAAGADV 922
TY +FG+ Y+ + + DLLP+ +K+ GD D A+AV +Y+ +M+++ S++AN+ +L+DVL++ P + +K+DD+ELLF+N H+L+N +R HQARE + ++ QV E R + ++ + A+E DL G PA DV
Sbjct: 41 TYHMFGSPYSTQDVVPDLLPQPGKKVYAPEGDEGD---------------------AAAV-----DYKAQMKKINRSLLANFVELVDVLIKKPAMFNEKLDDIELLFLNMHNLINGFRPHQARETVIQMLKTQVQERRDAARDIRRTIDESRLAVERVHGDLHESTDDAAAADGASPAGTDEDV 198
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Match: A0A8K1CA38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA38_PYTOL) HSP 1 Score: 80.9 bits (198), Expect = 1.000e-13 Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 2
Query: 377 TYTVFGTTYTNEFRIEDLLPKE-KLLFLHG-DAADTESASGRPGSGASCSRSSGTGASAVASDGMEYRREMQRLLGSIMANYRQLLDVLVRCPTLQGKKVDDLELLFVNFHSLLNRYRVHQAREQLAGRMRQQVAEER 784
TY +FGT Y+ + + DLLP+ K L+L G D+ ES S+ ++Y+ +M+++ S++AN+ +L+DVL++ P+L +K+ DLELLF+N H+L+N +R HQARE + ++ Q+ E R
Sbjct: 52 TYHMFGTPYSTKDVVPDLLPQPGKKLYLDGKDSVPGES-----------------------SEVIDYKAQMKKINHSLLANFTELVDVLIKKPSLFNEKLADLELLFLNMHNLINAFRPHQARETIIHMLKTQINERR 166 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig585.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig585.3.1 >prot_P-wetherbeei_contig585.3.1 ID=prot_P-wetherbeei_contig585.3.1|Name=mRNA_P-wetherbeei_contig585.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp MTEENAVVSTMPHPPDYFKLFWSTKRKGAVPAAELAAEDGVGTDAKCATSback to top mRNA from alignment at P-wetherbeei_contig585:4920..7666- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig585.3.1 ID=mRNA_P-wetherbeei_contig585.3.1|Name=mRNA_P-wetherbeei_contig585.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2747bp|location=Sequence derived from alignment at P-wetherbeei_contig585:4920..7666- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig585:4920..7666- >mRNA_P-wetherbeei_contig585.3.1 ID=mRNA_P-wetherbeei_contig585.3.1|Name=mRNA_P-wetherbeei_contig585.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig585:4920..7666- (Phaeothamnion wetherbeei SAG_119_79)back to top |