mRNA_P-wetherbeei_contig585.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig585.2.1
Unique NamemRNA_P-wetherbeei_contig585.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Match: A0A835YQW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.160e-18
Identity = 60/140 (42.86%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  202 DFTHYRPIEREAAPDLRVARLHLSARKAIKRGRPVWARSFYELVMYHWNERPCDCALAQSYLLLGLLEQKEKRPHNARAAFREGCARCPRCARLYQAWALFESKQGNLRRARQLIERAVRLDASLKDVLRWRIFAAASDA 621
            + T   P E+     LRV RLHLSARKAIK     WA   Y  V+  W         A++YLL+ L EQ+  +   AR  F  G A C    +L  +WALFESK G +  A  L + +V LD SL  VLRW++FA AS A
Sbjct:   67 ETTRGPPSEQLGGYQLRVERLHLSARKAIKHKHADWASRMYTYVLTAWTSELDSQDTARTYLLMALNEQRLGQYDAARLVFMRGVAHC-HSPKLLLSWALFESKHGRMDAALALAQHSVELDRSLAPVLRWKMFADASAA 205          
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Match: K8YSD5_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSD5_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 1.010e-13
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  211 HYRPIE-REAAP-DLRVARLHLSARKAIKRGRPVWARSFYELVMYHWNERPCDCALAQSYLLLGLLEQKEKRPHNARAAFREGCARCPRCARLYQAWALFESKQGNLRRARQLIERAVRLDASLKDVLRWRIFAAASDAAXXXXXXXXGTTGRPLA 672
            +YRP+   +  P D+R A LH+SARKAIK G+   AR FYEL ++ W     + A+A +Y L  LLEQ+ +    AR  F+E  AR P  ARL+QA                 I  AV  D SL+ VL+W+++  +   A  XXXXXX   G P A
Sbjct:   78 NYRPLPPSDNDPLDVRCALLHISARKAIKSGKMEIARRFYELFLFKWKGYRTENAIAHTYFLWALLEQRAEDYSKARRLFQEATARYPTHARLFQAXXXXXXXXXXXXXXXXXIASAVEHDKSLEPVLKWKMWGLSPAEAAAXXXXXXAGGGAPRA 233          
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Match: A0A7S2IFI1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IFI1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.940e-6
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  265 HLSARKAIKRGR-----PVWARSFYELVMYHWNERPCDCA-LAQSYLLLGLLEQKEKRPHNARAAFRE---------GCARCPRCARLYQAWALFESKQGNLRRARQLIERAVRLDASLKDVLRWRIF 603
            H  A + IKRG       ++ R+  E++     +  CD A LA S LLL LL Q+ +     R+ F           G   C   A++ QA+ALFE KQG+  ++ +L+ RAV++D  LK VL W+ F
Sbjct:  197 HYFALRKIKRGELRHAESIYRRTIQEIMDEDSEDGGCDHARLAVSTLLLALLMQRMRDVKGTRSVFNNFFRVAVIENGEKDCACSAKVLQAYALFEMKQGHSIKSLELVTRAVQMDERLKPVLEWKQF 324          
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Match: A0A7S1BZX4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZX4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.550e-5
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  358 CD-CALAQSYLLLGLLEQKEKRPHNARAAFREGCAR--------CPRCARLYQAWALFESKQGNLRRARQLIERAVRLDASLKDVLRWRIFA 606
            CD  ALA S LLL LL+Q+      AR+ F +            C   A++ QA+ALFE KQG   ++ +LIERAV LD +L +VLRW+ F+
Sbjct:  218 CDHSALASSTLLLALLKQRMGDIKGARSVFLKFFRHISETEVDSCSCSAKVLQAYALFEMKQGFSLKSLKLIERAVSLDGNLSNVLRWKQFS 309          
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Match: A0A7S2M7A3_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M7A3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.010e-5
Identity = 48/151 (31.79%), Postives = 72/151 (47.68%), Query Frame = 1
Query:  211 HYRPIEREAAPDLRVARLHLSARKAIKRGRPVWARSFYELVMYHW----NERPCDCA-LAQSYLLLGLLEQKEKRPHNARAAF-----------REGCARCPRCARLYQAWALFESKQGNLRRARQLIERAVRLDASLKDVLRWRIFAAAS 615
            HY P+  +   +L  A  H  AR  IK G+   A   Y  ++       +E  CD A LA S LLL L  Q+       RA F            +   +C   A++ QA+ALFE K G   ++ ++I++AV++D  L+ VL W+ F  A+
Sbjct:   88 HYDPLNDKNFVEL--ATKHYYARFLIKNGKLTLAEKIYRRIINELEAEDSEEDCDHAKLAVSTLLLALHMQRYDDIKATRAVFVNFFRRVALTEEDEEVKCSCSAKVLQAYALFEMKNGYSAKSLEIIQKAVKMDEELRPVLEWKQFRDAA 236          
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Match: B7FP56_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP56_PHATC)

HSP 1 Score: 55.1 bits (131), Expect = 6.710e-5
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  253 VARLHLSARKAIKRGRPVWARSFYELVMYHWN--ERPCDCA-LAQSYLLLGLLEQKEKRPHNARAAFR-------------EGCARCPRCARLYQAWALFESKQGNLRRARQLIERAVRLDASLKDVLRWRIFAAA 612
            +A+ H  A + IK G+P  A + Y  V+   +  +  CD A LA + LLL LL Q+       R+ F              E CA C   A++ QA+ALFE KQG+  ++  ++ +AV+LD SL  VLRW+ F  A
Sbjct:  106 LAKKHYFALRKIKDGKPGHAETIYRRVIDELSADDEHCDHAKLAVTTLLLALLLQRLGDIKQTRSVFLNFFRIAVLESAKDEECA-CS--AKVLQAYALFEMKQGHSLKSLDIVCKAVKLDPSLAPVLRWKQFRDA 238          
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Match: A0A7S4DX25_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DX25_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 7.560e-5
Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  262 LHLSARKAIKRGRPVWARSFYELVMYHWNER---PCDCALAQSYLLLGLLEQKEKRPHNARAAFREGCARCPRCARLYQAWALFESKQ-GNLRRARQLIERAVRLDASLK-DVLRWRIFA 606
            LH  AR AI++     A   Y+ ++Y + E    P    L  +YLL+ L  Q+EKR  +AR  F+EG  R    ++L  A AL ESKQ G +  AR +++   + D      + +W+IF+
Sbjct:   39 LHARARTAIRQKNYNVASEIYKSILYRFPEHVEVPRKM-LEDTYLLMALQHQREKRIEDARITFKEGLKRTSLSSKLLTALALMESKQEGRIYCARSIVKGVKKCDPERGVPLFKWKIFS 157          
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Match: A0A7S4RHI8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RHI8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 9.720e-5
Identity = 48/134 (35.82%), Postives = 66/134 (49.25%), Query Frame = 1
Query:  253 VARLHLSARKAIKRGRPVWARSFYELVMYH-WNERP-CDCA-LAQSYLLLGLLEQKEKRPHNARAAF---------REGCARCPRCARLYQAWALFESKQGNLRRARQLIERAVRLDASLKDVLRWRIFAAASD 618
            +A  H  A + IK G    A   Y   +    NE   CD A LA S LLL LL Q+ +     R+ F           G   C   A++ QA+ALFE KQG+  ++ +L+ RAV++D  LK VL W+ F  A +
Sbjct:  158 MATRHYFALRKIKNGELKHAEKIYRKTIDDILNEDDGCDHARLAVSTLLLALLMQRMQDVKGTRSVFLNFFRVAVIENGERDCACSAKVLQAYALFEMKQGHSIKSLELVRRAVQMDEKLKPVLEWKQFRDAKN 291          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig585.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YQW7_9STRA2.160e-1842.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YSD5_NANGC1.010e-1340.38Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2IFI1_9STRA8.940e-635.16Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1BZX4_9STRA3.550e-543.48Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2M7A3_9STRA4.010e-531.79Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
B7FP56_PHATC6.710e-536.03Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4DX25_9EUKA7.560e-534.17Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S4RHI8_9STRA9.720e-535.82Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig585contigP-wetherbeei_contig585:3217..4950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0QZ85
Model size1331
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons3
Evalue6.73e-08
EggNOG OGs2EIJ4@1|root,2SNYG@2759|Eukaryota,2XCSM@2836|Bacillariophyta
Cds size654
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.0206573-UTR-P-wetherbeei_contig585:3216..32611683186866.0206573-UTR-P-wetherbeei_contig585:3216..3261Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig585 3217..3261 +
1683186866.0618422-UTR-P-wetherbeei_contig585:4318..49501683186866.0618422-UTR-P-wetherbeei_contig585:4318..4950Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig585 4319..4950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.0313506-CDS-P-wetherbeei_contig585:3261..34881683186866.0313506-CDS-P-wetherbeei_contig585:3261..3488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig585 3262..3488 +
1683186866.0408692-CDS-P-wetherbeei_contig585:3698..39151683186866.0408692-CDS-P-wetherbeei_contig585:3698..3915Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig585 3699..3915 +
1683186866.050512-CDS-P-wetherbeei_contig585:4108..43181683186866.050512-CDS-P-wetherbeei_contig585:4108..4318Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig585 4109..4318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig585.2.1prot_P-wetherbeei_contig585.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig585 3262..4318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig585.2.1

>prot_P-wetherbeei_contig585.2.1 ID=prot_P-wetherbeei_contig585.2.1|Name=mRNA_P-wetherbeei_contig585.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
MKPSVCSVVLSMLPIAAALLPVSFPGVHLLVAASGATSAPKRKHGLACCI
GDDFTHYRPIEREAAPDLRVARLHLSARKAIKRGRPVWARSFYELVMYHW
NERPCDCALAQSYLLLGLLEQKEKRPHNARAAFREGCARCPRCARLYQAW
ALFESKQGNLRRARQLIERAVRLDASLKDVLRWRIFAAASDAADAAEAAA
AGTTGRPLARERPQPAT*
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mRNA from alignment at P-wetherbeei_contig585:3217..4950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig585.2.1 ID=mRNA_P-wetherbeei_contig585.2.1|Name=mRNA_P-wetherbeei_contig585.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1734bp|location=Sequence derived from alignment at P-wetherbeei_contig585:3217..4950+ (Phaeothamnion wetherbeei SAG_119_79)
AAGATACTGTTTCTCGATAAACAGACAGTCTCCTACTTAGCAACCATGAA GCCCTCCGTCTGTTCCGTCGTGCTTTCTATGCTTCCCATCGCCGCCGCGC TCCTGCCCGTCTCGTTTCCCGGCGTCCATCTTCTCGTTGCTGCTTCTGGC GCTACCTCTGCTCCTAAGAGGAAGCACGGCTTGGCGTGCTGCATCGGCGA CGACTTTACGCATTATCGGCCGATCGAGCGGGAGGCCGCGCCGGACCTCC GGGTCGCCCGGCTGCACCTCAGGTGAGACAGTGTGTTGGTTCTACACTAC CAAACTTCTTGTGCGAGCTGTTCTCATGGCATTCCATCACAACAACAGCA ATTACCGCGTGCCGGTCTTGTCTCTTTTATCTGCCTCGTCAATCCTGTGC ATGCGACGGACATTTTCCCCTCGTGCTGCTACCGTAATTTTTTTTCTTTT TCTGCCCTCTGCAACACGTGCCGACCCCTCAGCGCCCGAAAGGCAATCAA GCGAGGCCGTCCAGTCTGGGCGCGTTCCTTCTACGAGCTCGTCATGTACC ACTGGAACGAGCGGCCCTGCGACTGCGCTCTCGCCCAGTCGTACCTGCTG CTGGGCCTACTCGAGCAAAAGGAGAAGCGGCCACACAACGCGCGGGCGGC CTTCCGTGAGGGTTGCGCCCGCTGCCCCCGTTGTGCCCGTCTCTATCAGG TATAGAAACGTGGAAGTTTCTTTCCTGTCTCCTCTTTCCTTACCAGTTGC TCAACTATGTCTCAAAACCTGATGACCCATCGGTACAGTTCATTTCATGG CTCGGCCCCGAAACGGAGGGATTACTGGTTGAAGTCTTTTCCTTGCTCTG AACGCTGCCGTGCGTCGTGATATTCTGCTCGTTCCGCGGCAGGCCTGGGC GCTCTTCGAAAGCAAGCAGGGCAACCTTCGGCGGGCGCGGCAGCTGATCG AGCGGGCGGTGCGGCTGGACGCCTCCCTCAAAGACGTTCTCCGCTGGCGT ATCTTCGCCGCTGCTTCCGACGCCGCTGACGCCGCCGAAGCTGCTGCCGC TGGTACCACTGGTCGGCCCTTGGCGCGGGAGAGACCGCAGCCTGCAACAT AGCCGCATGTGTTTGTTTTACGTTTACGGTAGCGGCGGCGGTCACCTGCC GTTAACCGGCAACAGCTTGCCGTCGCTTGCTGACGGCGCCGGCCTGCCGT CAGGTTTGCGGCGATGATCTGCGACCAGAAGCTGGCGGCAGCAGCGACGG CGAGTCTGGTCTCTGGGGGTAGACGGGTCTAAAAACCAACAGCATGTATT CAGCAGGAGAATGTAGGTATAATGGGGGGAGCGGCGGCGGCAAACAGCGG TGGTTTTTGGACGGTTGGACAGCTGGGGGGCGGTGCACAAAACAGCGGCG ATTCTGAAGCAACGTCGGCGGCGGCGCTGCGGCGGCTGAGAATATCCCAG TTGCATTAGCGGCGACCACAGGGGTGGCGACGGCGGCAGCGGGAACAGCT AGTGGTAATGGGACACCGGCGTTACGTGGCATGGGTGGAGGACTGCATGG TGGCATCAGCCTCGTGTGCCACTGCCCGACCTCGCTGGCAAATTGCGCAC ATTGGAGGCTCGGGAGGCGGGCGAGAAGGGAGCAAGAACAGGGATCGCGC GAGAATAGGGGATTGTGCCCAGATGACAGGAGCCAAAACAGACATACCGC AGGTGCAATGGACGGAACACATATTTTCTTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig585:3217..4950+

>mRNA_P-wetherbeei_contig585.2.1 ID=mRNA_P-wetherbeei_contig585.2.1|Name=mRNA_P-wetherbeei_contig585.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig585:3217..4950+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCCCTCCGTCTGTTCCGTCGTGCTTTCTATGCTTCCCATCGCCGC
CGCGCTCCTGCCCGTCTCGTTTCCCGGCGTCCATCTTCTCGTTGCTGCTT
CTGGCGCTACCTCTGCTCCTAAGAGGAAGCACGGCTTGGCGTGCTGCATC
GGCGACGACTTTACGCATTATCGGCCGATCGAGCGGGAGGCCGCGCCGGA
CCTCCGGGTCGCCCGGCTGCACCTCAGCGCCCGAAAGGCAATCAAGCGAG
GCCGTCCAGTCTGGGCGCGTTCCTTCTACGAGCTCGTCATGTACCACTGG
AACGAGCGGCCCTGCGACTGCGCTCTCGCCCAGTCGTACCTGCTGCTGGG
CCTACTCGAGCAAAAGGAGAAGCGGCCACACAACGCGCGGGCGGCCTTCC
GTGAGGGTTGCGCCCGCTGCCCCCGTTGTGCCCGTCTCTATCAGGCCTGG
GCGCTCTTCGAAAGCAAGCAGGGCAACCTTCGGCGGGCGCGGCAGCTGAT
CGAGCGGGCGGTGCGGCTGGACGCCTCCCTCAAAGACGTTCTCCGCTGGC
GTATCTTCGCCGCTGCTTCCGACGCCGCTGACGCCGCCGAAGCTGCTGCC
GCTGGTACCACTGGTCGGCCCTTGGCGCGGGAGAGACCGCAGCCTGCAAC
ATAG
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