mRNA_P-wetherbeei_contig58254.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A521XA70_9PROT (Protein-export membrane protein SecF n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521XA70_9PROT) HSP 1 Score: 241 bits (615), Expect = 3.410e-77 Identity = 121/168 (72.02%), Postives = 151/168 (89.88%), Query Frame = 1
Query: 1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
L+F +ISLVTF+LAV FLATKGLH+S+EFTGGTV+E++Y A++ ++R AL++AG+ DTSVQNFGSSRDV+IRMPL QGQSSA+LS+KV DTL A++K +LRRVEFVGPQVG+ELAENGALAL++V +GI+ YLALRFEW+F ++AIIANLHDV+IILG FALFQW
Sbjct: 17 LVFNLISLVTFLLAVFFLATKGLHYSIEFTGGTVIEIAYDHPAEIQKVRSALEQAGYADTSVQNFGSSRDVLIRMPLKQGQSSAELSKKVMDTLSAEDKSVQLRRVEFVGPQVGRELAENGALALVIVCLGIMAYLALRFEWRFAVAAIIANLHDVIIILGCFALFQW 184
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A536Y3B3_9PROT (Protein-export membrane protein SecF n=10 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y3B3_9PROT) HSP 1 Score: 237 bits (604), Expect = 1.580e-75 Identity = 123/166 (74.10%), Postives = 146/166 (87.95%), Query Frame = 1
Query: 7 FYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
F ++SL+TF+LAV FLATKGL+FS+EFTGGTVMEVSY+ A+V++IR ALD G+ D SVQNFGSSRDV+IRMPL GQ+SADLS+ V + L D++ A LRRVEFVGPQVG+ELAENGALALL+ S+GIV YLA+RFEWKFG++AIIANLHDVVIILGFFALFQW
Sbjct: 19 FNVVSLLTFLLAVFFLATKGLNFSIEFTGGTVMEVSYEHAAEVEKIRKALDARGYHDYSVQNFGSSRDVLIRMPLKPGQNSADLSKAVMEGLTTDDRTATLRRVEFVGPQVGRELAENGALALLITSLGIVGYLAMRFEWKFGVAAIIANLHDVVIILGFFALFQW 184
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A1F4FA81_9PROT (Protein-export membrane protein SecF n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FA81_9PROT) HSP 1 Score: 229 bits (585), Expect = 1.260e-72 Identity = 123/168 (73.21%), Postives = 147/168 (87.50%), Query Frame = 1
Query: 1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
L+F +ISLVTF+ AV FLAT+GL+FS+EFTGGT++EV Y+ A+VDRIR +LDKAG+K + VQNFGSSR+V+IRM L +GQSSADLSQKV L+A + AELRRVEFVGPQVG+ELAE GALALLV ++GIVLYL LRFEW+FGLSAI+ANLHDVVIILGFF+ FQW
Sbjct: 17 LVFNVISLVTFLAAVFFLATRGLNFSIEFTGGTLIEVGYQQAAEVDRIRDSLDKAGYK-SEVQNFGSSREVLIRMHLEKGQSSADLSQKVMALLKAGDASAELRRVEFVGPQVGRELAEYGALALLVTAVGIVLYLWLRFEWRFGLSAIVANLHDVVIILGFFSFFQW 183
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A521YHD8_9PROT (Protein-export membrane protein SecF n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YHD8_9PROT) HSP 1 Score: 229 bits (585), Expect = 1.300e-72 Identity = 122/168 (72.62%), Postives = 147/168 (87.50%), Query Frame = 1
Query: 1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
L+F +ISL+TFI AV FLATKGL+FS+EFTGGT+MEV+YK A+V +IR AL++AGFK VQNFGSSRDV+IRMP+ + QS++ LSQKV++ L+A N DA++RRVEFVGPQVG ELA+ GALALLV +IGIV+YLALRFEWKFGL+ IIANLHDVVIILGFFA FQW
Sbjct: 17 LVFNVISLLTFIAAVFFLATKGLNFSIEFTGGTLMEVAYKQPAEVQKIREALERAGFK-AEVQNFGSSRDVLIRMPVEKNQSTSALSQKVQEVLRAGNPDADVRRVEFVGPQVGAELAQYGALALLVTAIGIVIYLALRFEWKFGLAGIIANLHDVVIILGFFAFFQW 183
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: G8QJX7_AZOOP (Protein-export membrane protein SecF n=5 Tax=Betaproteobacteria TaxID=28216 RepID=G8QJX7_AZOOP) HSP 1 Score: 228 bits (582), Expect = 3.930e-72 Identity = 119/168 (70.83%), Postives = 142/168 (84.52%), Query Frame = 1
Query: 1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
L+F +ISLVTF+LAV FLAT+GLH SVEFTGGT++EVSY AD+++IRGAL K+GF D SVQNFGSS+DV+IR+PL Q++A L + V L A++ A LRRVEFVGPQVGKELAENGA+ALLVV IGIV+YLA RFEW+F +SAIIANLHDV+IILGFFA FQW
Sbjct: 17 LVFNVISLVTFLLAVFFLATRGLHLSVEFTGGTLIEVSYSQAADLEKIRGALGKSGFSDYSVQNFGSSQDVLIRLPLKSEQNTAKLGESVMAALSAEDASASLRRVEFVGPQVGKELAENGAMALLVVIIGIVIYLAFRFEWRFSVSAIIANLHDVIIILGFFAFFQW 184
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A1F4EM41_9PROT (Protein-export membrane protein SecF n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EM41_9PROT) HSP 1 Score: 228 bits (581), Expect = 5.240e-72 Identity = 122/168 (72.62%), Postives = 146/168 (86.90%), Query Frame = 1
Query: 1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
L+F +ISL+TFILAV FLATKGL+FS+EFTGGT+MEV+Y+D+A+ +IR L+KAG K VQNFGSSRDV+IRMP+ +GQSS+DLSQKV L+ + AE+RRVEFVGPQVG+ELAE GALALLV ++GIVLYL +RFEW+FGLSAIIANLHDVVIILG FALFQW
Sbjct: 17 LVFNVISLITFILAVGFLATKGLNFSIEFTGGTLMEVNYRDSAEPQKIRETLEKAGLK-AEVQNFGSSRDVLIRMPIAKGQSSSDLSQKVLGLLKGQDATAEMRRVEFVGPQVGEELAEYGALALLVTAVGIVLYLWMRFEWRFGLSAIIANLHDVVIILGCFALFQW 183
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A1F4FGR7_9PROT (Protein-export membrane protein SecF n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FGR7_9PROT) HSP 1 Score: 228 bits (581), Expect = 5.240e-72 Identity = 120/168 (71.43%), Postives = 145/168 (86.31%), Query Frame = 1
Query: 1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
L+F IISL TF+ AV FLAT GL+FS+EFTGGT+MEV Y+ ADV +IR L+ AGFK VQNFGSSRDV+IRMP+ + QS+A LSQKV++ L+AD+K A++RRVEFVGPQVG+ELAE GALALLV ++GIV+YLALRFEWKFGL+AI+ANLHDV+IILGFFA FQW
Sbjct: 17 LVFNIISLATFLAAVFFLATSGLNFSIEFTGGTLMEVGYQQAADVQKIREKLEGAGFK-AEVQNFGSSRDVLIRMPIEKAQSTAALSQKVQELLRADDKSADVRRVEFVGPQVGRELAEYGALALLVTAVGIVIYLALRFEWKFGLAAIVANLHDVIIILGFFAFFQW 183
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A2N2RTH9_9PROT (Protein-export membrane protein SecF n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2N2RTH9_9PROT) HSP 1 Score: 228 bits (580), Expect = 7.650e-72 Identity = 120/166 (72.29%), Postives = 140/166 (84.34%), Query Frame = 1
Query: 7 FYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
F IISLVTFILAVVFL TKGLH SVEFTGGT++E Y+ AD+++IRGAL KAGF D +VQNFGSS+DV+IR+PL Q+S + Q V +L+A+ AELRRVEFVGPQVG+ELAENGALALLVV IGIV+YLA RFEW+F +SAIIANLHDV+IILGFFA FQW
Sbjct: 19 FNIISLVTFILAVVFLFTKGLHLSVEFTGGTLIETHYQQAADLEKIRGALGKAGFTDYAVQNFGSSQDVLIRLPLKSEQNSNQIGQSVMKSLEAEAPGAELRRVEFVGPQVGRELAENGALALLVVIIGIVIYLAFRFEWRFSVSAIIANLHDVIIILGFFAFFQW 184
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A1F3XAW2_9PROT (Protein-export membrane protein SecF (Fragment) n=1 Tax=Betaproteobacteria bacterium RBG_16_64_9 TaxID=1797478 RepID=A0A1F3XAW2_9PROT) HSP 1 Score: 225 bits (573), Expect = 7.780e-72 Identity = 119/168 (70.83%), Postives = 140/168 (83.33%), Query Frame = 1
Query: 1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
L+F IISL+TF+LAVVFLA KGLHFS+EFTGGTVMEVSY AD + IR L+ G D SVQNFG+SRDV+IR+PL Q+S +LS+ V + L A + A+L+RVEFVGPQVG+ELAENGALALLV ++GIV+YLA RFEWKFG+SAIIANLHDVVIILGFFA FQW
Sbjct: 17 LVFNIISLITFLLAVVFLAVKGLHFSIEFTGGTVMEVSYDRAADAEGIRKVLEAKGHSDFSVQNFGTSRDVLIRLPLRPNQNSGELSKSVMEALSAADPGAKLQRVEFVGPQVGRELAENGALALLVTALGIVIYLAFRFEWKFGVSAIIANLHDVVIILGFFAFFQW 184
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A3N5N8R1_9PROT (Protein-export membrane protein SecF n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5N8R1_9PROT) HSP 1 Score: 226 bits (577), Expect = 1.930e-71 Identity = 119/168 (70.83%), Postives = 142/168 (84.52%), Query Frame = 1
Query: 1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
L+F +ISLVTF+ AVV LATKGLHF V+FTGGTVMEVSY+ ADV R+R A+ K GF D +VQNFGS+R+V+IR+P+ +G SSA LS+ V + L+ + + ELRRVEFVGPQVG+EL ENGALALL VSIGIVLYL +RFEWKFGL+AIIANLHDVVIILGFF+ FQW
Sbjct: 17 LVFNVISLVTFLAAVVSLATKGLHFGVDFTGGTVMEVSYQQPADVGRVRDAIAKLGFTDVAVQNFGSAREVLIRLPIREGLSSAKLSETVMEELRKQDSNVELRRVEFVGPQVGRELVENGALALLFVSIGIVLYLWMRFEWKFGLAAIIANLHDVVIILGFFSFFQW 184 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig58254.1.1 >prot_P-wetherbeei_contig58254.1.1 ID=prot_P-wetherbeei_contig58254.1.1|Name=mRNA_P-wetherbeei_contig58254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGback to top mRNA from alignment at P-wetherbeei_contig58254:1..504+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig58254.1.1 ID=mRNA_P-wetherbeei_contig58254.1.1|Name=mRNA_P-wetherbeei_contig58254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58254:1..504+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig58254:1..504+ >mRNA_P-wetherbeei_contig58254.1.1 ID=mRNA_P-wetherbeei_contig58254.1.1|Name=mRNA_P-wetherbeei_contig58254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58254:1..504+ (Phaeothamnion wetherbeei SAG_119_79)back to top |