mRNA_P-wetherbeei_contig58254.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58254.1.1
Unique NamemRNA_P-wetherbeei_contig58254.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A521XA70_9PROT (Protein-export membrane protein SecF n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521XA70_9PROT)

HSP 1 Score: 241 bits (615), Expect = 3.410e-77
Identity = 121/168 (72.02%), Postives = 151/168 (89.88%), Query Frame = 1
Query:    1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            L+F +ISLVTF+LAV FLATKGLH+S+EFTGGTV+E++Y   A++ ++R AL++AG+ DTSVQNFGSSRDV+IRMPL QGQSSA+LS+KV DTL A++K  +LRRVEFVGPQVG+ELAENGALAL++V +GI+ YLALRFEW+F ++AIIANLHDV+IILG FALFQW
Sbjct:   17 LVFNLISLVTFLLAVFFLATKGLHYSIEFTGGTVIEIAYDHPAEIQKVRSALEQAGYADTSVQNFGSSRDVLIRMPLKQGQSSAELSKKVMDTLSAEDKSVQLRRVEFVGPQVGRELAENGALALVIVCLGIMAYLALRFEWRFAVAAIIANLHDVIIILGCFALFQW 184          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A536Y3B3_9PROT (Protein-export membrane protein SecF n=10 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y3B3_9PROT)

HSP 1 Score: 237 bits (604), Expect = 1.580e-75
Identity = 123/166 (74.10%), Postives = 146/166 (87.95%), Query Frame = 1
Query:    7 FYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            F ++SL+TF+LAV FLATKGL+FS+EFTGGTVMEVSY+  A+V++IR ALD  G+ D SVQNFGSSRDV+IRMPL  GQ+SADLS+ V + L  D++ A LRRVEFVGPQVG+ELAENGALALL+ S+GIV YLA+RFEWKFG++AIIANLHDVVIILGFFALFQW
Sbjct:   19 FNVVSLLTFLLAVFFLATKGLNFSIEFTGGTVMEVSYEHAAEVEKIRKALDARGYHDYSVQNFGSSRDVLIRMPLKPGQNSADLSKAVMEGLTTDDRTATLRRVEFVGPQVGRELAENGALALLITSLGIVGYLAMRFEWKFGVAAIIANLHDVVIILGFFALFQW 184          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A1F4FA81_9PROT (Protein-export membrane protein SecF n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FA81_9PROT)

HSP 1 Score: 229 bits (585), Expect = 1.260e-72
Identity = 123/168 (73.21%), Postives = 147/168 (87.50%), Query Frame = 1
Query:    1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            L+F +ISLVTF+ AV FLAT+GL+FS+EFTGGT++EV Y+  A+VDRIR +LDKAG+K + VQNFGSSR+V+IRM L +GQSSADLSQKV   L+A +  AELRRVEFVGPQVG+ELAE GALALLV ++GIVLYL LRFEW+FGLSAI+ANLHDVVIILGFF+ FQW
Sbjct:   17 LVFNVISLVTFLAAVFFLATRGLNFSIEFTGGTLIEVGYQQAAEVDRIRDSLDKAGYK-SEVQNFGSSREVLIRMHLEKGQSSADLSQKVMALLKAGDASAELRRVEFVGPQVGRELAEYGALALLVTAVGIVLYLWLRFEWRFGLSAIVANLHDVVIILGFFSFFQW 183          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A521YHD8_9PROT (Protein-export membrane protein SecF n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YHD8_9PROT)

HSP 1 Score: 229 bits (585), Expect = 1.300e-72
Identity = 122/168 (72.62%), Postives = 147/168 (87.50%), Query Frame = 1
Query:    1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            L+F +ISL+TFI AV FLATKGL+FS+EFTGGT+MEV+YK  A+V +IR AL++AGFK   VQNFGSSRDV+IRMP+ + QS++ LSQKV++ L+A N DA++RRVEFVGPQVG ELA+ GALALLV +IGIV+YLALRFEWKFGL+ IIANLHDVVIILGFFA FQW
Sbjct:   17 LVFNVISLLTFIAAVFFLATKGLNFSIEFTGGTLMEVAYKQPAEVQKIREALERAGFK-AEVQNFGSSRDVLIRMPVEKNQSTSALSQKVQEVLRAGNPDADVRRVEFVGPQVGAELAQYGALALLVTAIGIVIYLALRFEWKFGLAGIIANLHDVVIILGFFAFFQW 183          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: G8QJX7_AZOOP (Protein-export membrane protein SecF n=5 Tax=Betaproteobacteria TaxID=28216 RepID=G8QJX7_AZOOP)

HSP 1 Score: 228 bits (582), Expect = 3.930e-72
Identity = 119/168 (70.83%), Postives = 142/168 (84.52%), Query Frame = 1
Query:    1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            L+F +ISLVTF+LAV FLAT+GLH SVEFTGGT++EVSY   AD+++IRGAL K+GF D SVQNFGSS+DV+IR+PL   Q++A L + V   L A++  A LRRVEFVGPQVGKELAENGA+ALLVV IGIV+YLA RFEW+F +SAIIANLHDV+IILGFFA FQW
Sbjct:   17 LVFNVISLVTFLLAVFFLATRGLHLSVEFTGGTLIEVSYSQAADLEKIRGALGKSGFSDYSVQNFGSSQDVLIRLPLKSEQNTAKLGESVMAALSAEDASASLRRVEFVGPQVGKELAENGAMALLVVIIGIVIYLAFRFEWRFSVSAIIANLHDVIIILGFFAFFQW 184          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A1F4EM41_9PROT (Protein-export membrane protein SecF n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EM41_9PROT)

HSP 1 Score: 228 bits (581), Expect = 5.240e-72
Identity = 122/168 (72.62%), Postives = 146/168 (86.90%), Query Frame = 1
Query:    1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            L+F +ISL+TFILAV FLATKGL+FS+EFTGGT+MEV+Y+D+A+  +IR  L+KAG K   VQNFGSSRDV+IRMP+ +GQSS+DLSQKV   L+  +  AE+RRVEFVGPQVG+ELAE GALALLV ++GIVLYL +RFEW+FGLSAIIANLHDVVIILG FALFQW
Sbjct:   17 LVFNVISLITFILAVGFLATKGLNFSIEFTGGTLMEVNYRDSAEPQKIRETLEKAGLK-AEVQNFGSSRDVLIRMPIAKGQSSSDLSQKVLGLLKGQDATAEMRRVEFVGPQVGEELAEYGALALLVTAVGIVLYLWMRFEWRFGLSAIIANLHDVVIILGCFALFQW 183          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A1F4FGR7_9PROT (Protein-export membrane protein SecF n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FGR7_9PROT)

HSP 1 Score: 228 bits (581), Expect = 5.240e-72
Identity = 120/168 (71.43%), Postives = 145/168 (86.31%), Query Frame = 1
Query:    1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            L+F IISL TF+ AV FLAT GL+FS+EFTGGT+MEV Y+  ADV +IR  L+ AGFK   VQNFGSSRDV+IRMP+ + QS+A LSQKV++ L+AD+K A++RRVEFVGPQVG+ELAE GALALLV ++GIV+YLALRFEWKFGL+AI+ANLHDV+IILGFFA FQW
Sbjct:   17 LVFNIISLATFLAAVFFLATSGLNFSIEFTGGTLMEVGYQQAADVQKIREKLEGAGFK-AEVQNFGSSRDVLIRMPIEKAQSTAALSQKVQELLRADDKSADVRRVEFVGPQVGRELAEYGALALLVTAVGIVIYLALRFEWKFGLAAIVANLHDVIIILGFFAFFQW 183          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A2N2RTH9_9PROT (Protein-export membrane protein SecF n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2N2RTH9_9PROT)

HSP 1 Score: 228 bits (580), Expect = 7.650e-72
Identity = 120/166 (72.29%), Postives = 140/166 (84.34%), Query Frame = 1
Query:    7 FYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            F IISLVTFILAVVFL TKGLH SVEFTGGT++E  Y+  AD+++IRGAL KAGF D +VQNFGSS+DV+IR+PL   Q+S  + Q V  +L+A+   AELRRVEFVGPQVG+ELAENGALALLVV IGIV+YLA RFEW+F +SAIIANLHDV+IILGFFA FQW
Sbjct:   19 FNIISLVTFILAVVFLFTKGLHLSVEFTGGTLIETHYQQAADLEKIRGALGKAGFTDYAVQNFGSSQDVLIRLPLKSEQNSNQIGQSVMKSLEAEAPGAELRRVEFVGPQVGRELAENGALALLVVIIGIVIYLAFRFEWRFSVSAIIANLHDVIIILGFFAFFQW 184          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A1F3XAW2_9PROT (Protein-export membrane protein SecF (Fragment) n=1 Tax=Betaproteobacteria bacterium RBG_16_64_9 TaxID=1797478 RepID=A0A1F3XAW2_9PROT)

HSP 1 Score: 225 bits (573), Expect = 7.780e-72
Identity = 119/168 (70.83%), Postives = 140/168 (83.33%), Query Frame = 1
Query:    1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            L+F IISL+TF+LAVVFLA KGLHFS+EFTGGTVMEVSY   AD + IR  L+  G  D SVQNFG+SRDV+IR+PL   Q+S +LS+ V + L A +  A+L+RVEFVGPQVG+ELAENGALALLV ++GIV+YLA RFEWKFG+SAIIANLHDVVIILGFFA FQW
Sbjct:   17 LVFNIISLITFLLAVVFLAVKGLHFSIEFTGGTVMEVSYDRAADAEGIRKVLEAKGHSDFSVQNFGTSRDVLIRLPLRPNQNSGELSKSVMEALSAADPGAKLQRVEFVGPQVGRELAENGALALLVTALGIVIYLAFRFEWKFGVSAIIANLHDVVIILGFFAFFQW 184          
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Match: A0A3N5N8R1_9PROT (Protein-export membrane protein SecF n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5N8R1_9PROT)

HSP 1 Score: 226 bits (577), Expect = 1.930e-71
Identity = 119/168 (70.83%), Postives = 142/168 (84.52%), Query Frame = 1
Query:    1 LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRGALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKDAELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAIIANLHDVVIILGFFALFQW 504
            L+F +ISLVTF+ AVV LATKGLHF V+FTGGTVMEVSY+  ADV R+R A+ K GF D +VQNFGS+R+V+IR+P+ +G SSA LS+ V + L+  + + ELRRVEFVGPQVG+EL ENGALALL VSIGIVLYL +RFEWKFGL+AIIANLHDVVIILGFF+ FQW
Sbjct:   17 LVFNVISLVTFLAAVVSLATKGLHFGVDFTGGTVMEVSYQQPADVGRVRDAIAKLGFTDVAVQNFGSAREVLIRLPIREGLSSAKLSETVMEELRKQDSNVELRRVEFVGPQVGRELVENGALALLFVSIGIVLYLWMRFEWKFGLAAIIANLHDVVIILGFFSFFQW 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521XA70_9PROT3.410e-7772.02Protein-export membrane protein SecF n=3 Tax=uncla... [more]
A0A536Y3B3_9PROT1.580e-7574.10Protein-export membrane protein SecF n=10 Tax=Beta... [more]
A0A1F4FA81_9PROT1.260e-7273.21Protein-export membrane protein SecF n=1 Tax=Betap... [more]
A0A521YHD8_9PROT1.300e-7272.62Protein-export membrane protein SecF n=1 Tax=Betap... [more]
G8QJX7_AZOOP3.930e-7270.83Protein-export membrane protein SecF n=5 Tax=Betap... [more]
A0A1F4EM41_9PROT5.240e-7272.62Protein-export membrane protein SecF n=3 Tax=uncla... [more]
A0A1F4FGR7_9PROT5.240e-7271.43Protein-export membrane protein SecF n=1 Tax=Betap... [more]
A0A2N2RTH9_9PROT7.650e-7272.29Protein-export membrane protein SecF n=3 Tax=Betap... [more]
A0A1F3XAW2_9PROT7.780e-7270.83Protein-export membrane protein SecF (Fragment) n=... [more]
A0A3N5N8R1_9PROT1.930e-7170.83Protein-export membrane protein SecF n=1 Tax=Betap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58254contigP-wetherbeei_contig58254:1..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog640081.Dsui_3326
Preferred namesecF
PFAMsSecD_SecF,Sec_GG
Model size504
Max annot lvl206389|Rhodocyclales
KEGG koko:K03074
KEGG TC2.A.6.4,3.A.5.2,3.A.5.7
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.44e-73
EggNOG OGsCOG0341@1|root,COG0341@2|Bacteria,1MU74@1224|Proteobacteria,2VHZG@28216|Betaproteobacteria,2KVVV@206389|Rhodocyclales
DescriptionPart of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Cds size504
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.1367137-CDS-P-wetherbeei_contig58254:0..5041683186863.1367137-CDS-P-wetherbeei_contig58254:0..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58254 1..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58254.1.1prot_P-wetherbeei_contig58254.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58254 1..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58254.1.1

>prot_P-wetherbeei_contig58254.1.1 ID=prot_P-wetherbeei_contig58254.1.1|Name=mRNA_P-wetherbeei_contig58254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
LLFYIISLVTFILAVVFLATKGLHFSVEFTGGTVMEVSYKDTADVDRIRG
ALDKAGFKDTSVQNFGSSRDVMIRMPLVQGQSSADLSQKVKDTLQADNKD
AELRRVEFVGPQVGKELAENGALALLVVSIGIVLYLALRFEWKFGLSAII
ANLHDVVIILGFFALFQW
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mRNA from alignment at P-wetherbeei_contig58254:1..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58254.1.1 ID=mRNA_P-wetherbeei_contig58254.1.1|Name=mRNA_P-wetherbeei_contig58254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58254:1..504+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGTTCTACATCATCTCGCTGGTGACCTTCATCCTCGCCGTCGTGTT CCTCGCCACCAAGGGGCTGCACTTCTCTGTGGAATTCACCGGCGGCACGG TGATGGAGGTCAGCTACAAGGACACTGCGGACGTGGACCGCATCCGCGGG GCGTTGGACAAGGCGGGCTTCAAGGACACCTCCGTGCAGAACTTCGGCTC GTCGCGCGACGTGATGATCCGCATGCCGCTGGTGCAGGGCCAGTCCAGCG CCGACCTGTCGCAGAAGGTCAAGGACACGCTGCAGGCCGACAACAAGGAC GCCGAACTGCGGCGCGTCGAGTTCGTCGGCCCCCAGGTCGGCAAGGAGCT CGCCGAGAACGGGGCGCTGGCCCTGCTCGTCGTCTCGATCGGCATCGTGC TCTACCTCGCGCTGCGCTTCGAATGGAAGTTCGGGCTGTCGGCGATCATC GCCAACCTGCACGACGTGGTGATCATCCTGGGCTTCTTCGCGCTGTTCCA GTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58254:1..504+

>mRNA_P-wetherbeei_contig58254.1.1 ID=mRNA_P-wetherbeei_contig58254.1.1|Name=mRNA_P-wetherbeei_contig58254.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58254:1..504+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGTTCTACATCATCTCGCTGGTGACCTTCATCCTCGCCGTCGTGTT
CCTCGCCACCAAGGGGCTGCACTTCTCTGTGGAATTCACCGGCGGCACGG
TGATGGAGGTCAGCTACAAGGACACTGCGGACGTGGACCGCATCCGCGGG
GCGTTGGACAAGGCGGGCTTCAAGGACACCTCCGTGCAGAACTTCGGCTC
GTCGCGCGACGTGATGATCCGCATGCCGCTGGTGCAGGGCCAGTCCAGCG
CCGACCTGTCGCAGAAGGTCAAGGACACGCTGCAGGCCGACAACAAGGAC
GCCGAACTGCGGCGCGTCGAGTTCGTCGGCCCCCAGGTCGGCAAGGAGCT
CGCCGAGAACGGGGCGCTGGCCCTGCTCGTCGTCTCGATCGGCATCGTGC
TCTACCTCGCGCTGCGCTTCGAATGGAAGTTCGGGCTGTCGGCGATCATC
GCCAACCTGCACGACGTGGTGATCATCCTGGGCTTCTTCGCGCTGTTCCA
GTGG
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