mRNA_P-wetherbeei_contig5820.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5820.1.2
Unique NamemRNA_P-wetherbeei_contig5820.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5820.1.2 vs. uniprot
Match: UPI001F5DE0C5 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DE0C5)

HSP 1 Score: 68.9 bits (167), Expect = 3.450e-8
Identity = 68/276 (24.64%), Postives = 112/276 (40.58%), Query Frame = 2 
Query:  449 VTRMVSDIRQFFVNFKRLPCIRRILSPAAKTQATKSLLRDDANNIIQWLQQMG--DDGCRDARLLDDDGRLAAVLWSTKKQELA-KLYGQVVIPDKPFKTNRGKW-------------SVCQG--FLRKEDIAAFVWAFNNYLKWCCDGGWYPPDVILANGAKPATAAIKENMPSTKHFLYPWHLFKNLKEHTDKHLHGNQDLLRACRTTFRSA-ECAATSEEFEACWGKFTA-FHLPDGMKTYLSGLHERREM*ACYALSCVLTVEIIVTSRVES 1216
            +T+  S I  FF + + +P  +R L     +  ++    DD       + +M   D   RD+ L+DD+GR+ A++W+  K  +  + +G  +  D  ++TN+                S+  G   L  E++  F W F  ++      G  PP  IL +  +    AI   +P T H    WH+ +  KEH    L          R  F    E   T EEFE  W      + L D    +++ ++E RE  A    + +    +  T R ES
Sbjct:  123 LTKTFSVIGSFFGSMENIPFNKRSLRTLCAS-ISRDHSDDDMRKTYDVMSEMKMKDPNFRDSCLVDDEGRIRALMWTNGKSRMQYQQFGDAITFDTTYRTNQYDMPFGLFVGVNNHFQSILLGAVLLMNENMETFEWVFKEFVSLM---GGKPPVTILTDQCRAMEIAISAVLPDTTHRWCKWHVLRKAKEH----LGSFYSKAAGFRDEFHKILEYMVTVEEFEHAWSILVEKYGLED--HPFITQIYEVREKWAKPYFAGIFCARMTSTQRSES 388
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5820.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001F5DE0C53.450e-824.64protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Loliu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5820contigP-wetherbeei_contig5820:156..3686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog38727.Pavir.Ia01356.1.p
PFAMsFAR1,MULE,SWIM
Model size2736
Max annot lvl35493|Streptophyta
KEGG koko:K17604
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.37e-10
EggNOG OGs2A7Z7@1|root,2RYFA@2759|Eukaryota,37U9K@33090|Viridiplantae,3GI4V@35493|Streptophyta,3M2I4@4447|Liliopsida,3IM68@38820|Poales
DescriptionMULE transposase domain
Cds size696
COG categoryS
BRITEko00000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5820.1.2prot_P-wetherbeei_contig5820.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5820 1819..3229 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.3611126-UTR-P-wetherbeei_contig5820:155..8571683186862.3611126-UTR-P-wetherbeei_contig5820:155..857Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5820 156..857 -
1683186862.3738055-UTR-P-wetherbeei_contig5820:937..18181683186862.3738055-UTR-P-wetherbeei_contig5820:937..1818Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5820 938..1818 -
1683186862.4193645-UTR-P-wetherbeei_contig5820:3229..36861683186862.4193645-UTR-P-wetherbeei_contig5820:3229..3686Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5820 3230..3686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.382879-CDS-P-wetherbeei_contig5820:1818..18841683186862.382879-CDS-P-wetherbeei_contig5820:1818..1884Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5820 1819..1884 -
1683186862.3912623-CDS-P-wetherbeei_contig5820:2094..24371683186862.3912623-CDS-P-wetherbeei_contig5820:2094..2437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5820 2095..2437 -
1683186862.3998332-CDS-P-wetherbeei_contig5820:2734..29341683186862.3998332-CDS-P-wetherbeei_contig5820:2734..2934Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5820 2735..2934 -
1683186862.4095216-CDS-P-wetherbeei_contig5820:3142..32291683186862.4095216-CDS-P-wetherbeei_contig5820:3142..3229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5820 3143..3229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5820.1.2

>prot_P-wetherbeei_contig5820.1.2 ID=prot_P-wetherbeei_contig5820.1.2|Name=mRNA_P-wetherbeei_contig5820.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp
MVSDIRQFFVNFKRLPCIRRILSPAAKTQATKSLLRDDANNIIQWLQQMG
DDGCRDARLLDDDGRLAAVLWSTKKQELAKLYGQVVIPDKPFKTNRGKWS
VCQGFLRKEDIAAFVWAFNNYLKWCCDGGWYPPDVILANGAKPATAAIKE
NMPSTKHFLYPWHLFKNLKEHTDKHLHGNQDLLRACRTTFRSAECAATSE
EFEACWGKFTAFHLPDGMKTYLSGLHERREM*
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mRNA from alignment at P-wetherbeei_contig5820:156..3686-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5820.1.2 ID=mRNA_P-wetherbeei_contig5820.1.2|Name=mRNA_P-wetherbeei_contig5820.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3531bp|location=Sequence derived from alignment at P-wetherbeei_contig5820:156..3686- (Phaeothamnion wetherbeei SAG_119_79)
TACTGCTGGTTCCAGCTAACGGCTTGTCTATCTCATTGGTACCGCTTTCC
CAGCGGCCACCTGCCTTCCATCGGCGGGAGAAGCCTGTTATTACTAACAC
TCCCTTCACCAAGGGCGGGATGCCGGGTGTGTAAACCTCCCCAAAGAAAA
CGCGGCCTCGGTGCTCACCGAAGATTTTTCGCCGCTTTCGGCTCGCTGCG
CTTCCCACTGCGTTTCGTTGCCCGTTCGTCCGCGGGGACTGGAACCACGA
GGGTCACACTGGCTTCCTTGCATAATGACAAGTGCCGGCTTTTGAAGCAC
GTTGAAAGCAAGGCGGCTTCTGAGCGCCGCCGCGCCGTCGGTACTGGCGC
CGCCCGCGGTCCATTTGACGAGGCAATTGTGACAGGGTGACGGCCTCGAG
CCAAACTGCGTCGGGCCGGAGTTGATCGCGGAGATTGAGGGCTGGGCGGT
GACGCGCATGGTCAGCGATATTCGGCAGTTTTTCGTCAACTTCAAGCGGC
TTCCGTGTATCCGCCGCATCCTTTCACCCGCGGCAAAGACGCAGGTGGGT
ACGTCTAATGGTGAAAGGCCAAAAGTTCAAGAAAACGGAAAGAGGAGTCG
AAAAGGAGAAAGAACTCCTCGGAGTGGGTTTCCTAGCTGAGCCGCTTTTC
AAGTTATGTGCTGTCTCCAAGCTGCTCACTTATTCATCAATGATTGCCTC
TTTGCCAACCCCGGTGCCGTATTAAGGAAACAATATCGTGGCCGACGTCA
AGGCTACGAAGTCATTGCTCAGGGATGATGCCAACAACATCATTCAGTGG
CTGCAGCAGATGGGCGACGATGGCTGCAGAGATGCTCGCCTCCTTGATGA
TGACGGCCGTCTGGCGGCCGTCCTGTGGTCAACGAAGAAGCAAGAGCTTG
CCAAGCTGTACGGCCAAGTCGTCATCCCAGACAAACCCTTCAAGACCAAC
CGGTTCGGTCTTCCCTTCTTTGTTAATGTCTGCGTCCACGGCAACGACAA
TGTTCTCTCTTCATGCCGGCCAGTAGCCCAGGCAGCTGTTGCTGCCGTTA
ATGTCCGCCGCCGCCGCCGCCGCTGCCGTCGCCGCTGCCGCCGCCGCCGC
CACCGCCTCCGCTTTTTGCGACTGCGGCCGCCGCCGTCTTGCCTTCCAAA
TATCTGTTCGCATATATCTAAACCCGACATATGTTTCACCATTTTCTTTT
CTTTTGCCGTTTTGTGACCGTTCTGCAAACAACTTTTTTCTCCCTGAAGA
GGAAAATGGTCTGTCTGCCAAGGCTTTTTACGAAAGGAAGACATTGCTGC
TTTCGTATGGGCCTTCAACAACTACTTGAAATGGTGCTGCGACGGTGGAT
GGTATCCGCCAGATGTTATCCTCGCGAACGGTGCAAAGCCGGCCACGGCG
GCCATCAAGGAGAATATGCCGAGCACCAAGCACTTCCTCTACCCGTGGCA
TCTGTTCAAAAACTTGAAGGAACATACCGACAAGCACTTGCACGGCAACC
AGGATCTGCTTCGGGCTTGCCGCACCACCTTCCGCTCAGCAGAGTGCGCT
GCGACGTCGGAGGAGTTCGAGGCGTGTTGGGGCAAATTCACGGTGTGTAA
GAATTGCTGCTCACCGAGGGATCTTCTCGTTGTTCATTCCATATTTCTCG
TTTGTTCACGTTCGGACTGATTGGCTGACGGGGCCGGACTGGCCGACATG
CAGAGTAAGAAGCGCATGATTCTTGCTCCCCTGTCTCACTGTTTTACGCG
TGTGCGTCTGGCTTTTGCCGTTTCTTCCATGCCGAATTGCACTTCTTGTC
AGGCGTTCCACCTGCCCGACGGCATGAAGACATACCTCTCCGGGCTGCAC
GAGCGGAGAGAGATGTGAGCGTGTTACGCCCTCTCGTGTGTTCTGACCGT
GGAGATAATAGTGACGTCTCGCGTGGAGTCGTTTTTCGCGGTGTTCAAGG
CCATAGCCGAGAAGGTCTACCGCTCAGAGGCGTTGCGCCGCTCAAGTTCT
GACTGCGCTGAACCTCAGCTGGGATGTCCGGGCGGTGGGCGACGCCGAAA
GGCCCTTCAGGCGTCTTGTGCGCGCCTGGACGACCGTATCGCCAAGTTCG
TCCCAGACATGGTTTGGTGGACCGAGACTTACTTGACGACATCGTCCCAT
GGTAAGATGAAGCAGCAACTAAATGCTGTCTCCTACGACACTAAACTGGT
GCAATAGATTGGCAACGCTGCCGCTTAGGCCGTCGCGGCGATTTCCCGTG
TAGCAGCAGGAGCCGGCACGAGAGTGGCAACAGCTGGGGTGTCGACGGCG
GGCACGGCAGCAGCAGGCAGCACGGGACTTAGAGCAACGACGGCGGCGGC
AGCGGTAGCGGCCGCGATGGTGAACCGTAGAGCGGCTGGGGCGGGACTGG
CAGGCGCAGGAGCGGCGACTGCCACGTGGCAGGGCGGGGCCATGGTCGCT
GGGAAGAAGGCGGCGGTGACGTCATGCGCTACCGCCGTTACGGACCCAAA
AGACTCCATAACCATCGACGACAGGCCGCGCATGTCCACTGGCAGCACTG
GCAGCACCCAGCAACCTGTGCTCGAACGATAATACGCACCCCTGCTACCT
GCATGCTGATCCAACGGTACGGGATAGCCTGCCGGCACCTTTTAGCGTGC
CGATATCGCCACGGCCATCAGCTTGATATCCCATGTTCATCTTTGATCAG
TGGAACCCTTGCTGGCGGCGGCGGCGAATGCAGTTTACTCGCATGGCAGG
CCTCGGGGCGGGCAGCATTATGACGGGCGGTGGCGCGGACGGCAGCGGCG
GCGGCGAATGCAGTTTACTCGCATGGCAGGCCTCGGGGCGGGCAGCATTA
TGACGGGCGGTGGCGCGGACGGCAGCGGCGGCGGCGCTGCGGACAGCAGC
GGCGACAGCGGCGGCGGCGGCGGCTGCGGCTGCGGCAGGGGCGTCGACGC
GAGCGGCGGCGGAAGCGGCGGCGCCGCAGCCAACGCCGCAAGGCGTCGCT
TCGGCAGCCCTGGCGCTAATGCGGCCATCCTCCCTCACGGCCAACTTCGA
TGTCATCATGACATTGTGTGCAGCAGTATTTGGTGCAACTGACGCCGCCT
CTCGCCGGCGGTGCCGGCGTTGCGACCAGTAGTGGTAGAAACGCGGAAAG
CCCGAAGAAATGTCGCCGCAGCTTCAGCATCAGTTCAGCATAGACATCGA
TCGCCTGATAGCGCGATTTCTTGTGCTGGGGAGCGGGGCGGGTAAGGGGA
TGGTGCCGCGAGCATAACCGGGGGCACCCTCGCTCCCGCCCTGACGGGTG
AGGGGGGTGGCATCGAGAGCACGATGGGGTGCGCCTTAGCTCCAGCCTTG
ATAGGGCCGCTGCGACGGCCAAGCGCTACAGGAGCTCTTGCACACGTGGG
AAATCCCAGGCCCCGCGTGGGCCAACTCCTAGGTCCGAAACCAAGGAACA
AGCGCTTCAGGACATGACATCAATTCCTAATTATGCAGAAACTTTGGAAA
CAATTGCTGTTTCCAAAACTCTCCTTCTCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5820:156..3686-

>mRNA_P-wetherbeei_contig5820.1.2 ID=mRNA_P-wetherbeei_contig5820.1.2|Name=mRNA_P-wetherbeei_contig5820.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig5820:156..3686- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAGCGATATTCGGCAGTTTTTCGTCAACTTCAAGCGGCTTCCGTG
TATCCGCCGCATCCTTTCACCCGCGGCAAAGACGCAGGCTACGAAGTCAT
TGCTCAGGGATGATGCCAACAACATCATTCAGTGGCTGCAGCAGATGGGC
GACGATGGCTGCAGAGATGCTCGCCTCCTTGATGATGACGGCCGTCTGGC
GGCCGTCCTGTGGTCAACGAAGAAGCAAGAGCTTGCCAAGCTGTACGGCC
AAGTCGTCATCCCAGACAAACCCTTCAAGACCAACCGAGGAAAATGGTCT
GTCTGCCAAGGCTTTTTACGAAAGGAAGACATTGCTGCTTTCGTATGGGC
CTTCAACAACTACTTGAAATGGTGCTGCGACGGTGGATGGTATCCGCCAG
ATGTTATCCTCGCGAACGGTGCAAAGCCGGCCACGGCGGCCATCAAGGAG
AATATGCCGAGCACCAAGCACTTCCTCTACCCGTGGCATCTGTTCAAAAA
CTTGAAGGAACATACCGACAAGCACTTGCACGGCAACCAGGATCTGCTTC
GGGCTTGCCGCACCACCTTCCGCTCAGCAGAGTGCGCTGCGACGTCGGAG
GAGTTCGAGGCGTGTTGGGGCAAATTCACGGCGTTCCACCTGCCCGACGG
CATGAAGACATACCTCTCCGGGCTGCACGAGCGGAGAGAGATGTGA
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