mRNA_P-wetherbeei_contig58101.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A2E1ED04_9HYPH (Very short patch repair endonuclease n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2E1ED04_9HYPH) HSP 1 Score: 178 bits (451), Expect = 3.330e-55 Identity = 83/125 (66.40%), Postives = 93/125 (74.40%), Query Frame = 1
Query: 4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
R R M+A+K KDT PEW VRR+LH+AGYRYRLH +LPGKPD+ FPSR KVI IHGCFWHGH CKRGAR P SN EYWR KIS N RDA LR GWSI +WECE+K+ LNRL+ FL
Sbjct: 6 RSRIMRAVKDKDTAPEWSVRRMLHAAGYRYRLHCKELPGKPDLCFPSRKKVIFIHGCFWHGHNCKRGAREPKSNVEYWRAKISRNCERDAAHMAALRSVGWSILILWECEIKSGTATLNRLKAFL 130
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: UPI001C31CA88 (DNA mismatch endonuclease Vsr n=1 Tax=Sphingobium sp. AS12 TaxID=2849495 RepID=UPI001C31CA88) HSP 1 Score: 175 bits (444), Expect = 3.520e-54 Identity = 78/127 (61.42%), Postives = 97/127 (76.38%), Query Frame = 1
Query: 1 LRRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLN 381
LR RTM+A++SKDTKPE IVR+L+H GYRYRLH LPG PD+VF +R +V+ +HGCFWHGH CKRGAR P +N EYWR+KI NRARD+R L GW + T+WECEL N++ L +RLR FL+
Sbjct: 7 LRSRTMRAVRSKDTKPEMIVRKLIHGMGYRYRLHRKDLPGSPDLVFAARRRVVFVHGCFWHGHDCKRGARQPKANAEYWREKIERNRARDSRATGGLTANGWLVATIWECELGNREHLKDRLRSFLD 133
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: UPI0015DA33CC (DNA mismatch endonuclease Vsr n=1 Tax=Agrobacterium vitis TaxID=373 RepID=UPI0015DA33CC) HSP 1 Score: 172 bits (435), Expect = 7.500e-53 Identity = 76/126 (60.32%), Postives = 96/126 (76.19%), Query Frame = 1
Query: 4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLN 381
R +TM+A++SKDTKPE IVRRLLHS G+R+RLH LPG PD+VFP RHKVI +HGCFWHGH C RGAR+P +N YW K+ NR RD R+ +LL + GW+ VWECE+K++ RL +R+ FLN
Sbjct: 7 RSKTMRAVRSKDTKPELIVRRLLHSLGFRFRLHRRDLPGSPDLVFPGRHKVIFVHGCFWHGHDCSRGARVPKTNQVYWTDKVKRNRERDERSHRLLSELGWTTCVVWECEIKDRVRLTDRVLSFLN 132
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A2W4QV52_9PROT (Very short patch repair endonuclease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QV52_9PROT) HSP 1 Score: 170 bits (431), Expect = 2.860e-52 Identity = 80/127 (62.99%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 1 LRRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLN 381
+R +TM A+K KDT+PE +VRRL HS GYRYRLH A LPGKPD+VFPSR KVI +HGCFWHGH C RG+R+P +N YW KI NRARD R +Q LR+ GW + TVWECE K+ L R+ RFLN
Sbjct: 6 IRSKTMAAVKGKDTEPELVVRRLCHSLGYRYRLHRADLPGKPDLVFPSRRKVIFVHGCFWHGHDCARGSRVPKTNRTYWVAKIGRNRARDERYQQRLRELGWRVLTVWECETKSPG-LKRRIVRFLN 131
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A2D4VGN9_9HYPH (Very short patch repair endonuclease n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D4VGN9_9HYPH) HSP 1 Score: 167 bits (424), Expect = 2.580e-51 Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query: 16 MQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLN 381
M+A+K+KDTKPE VRR+L AGYRYRLH + LPGKPD+VFPSR K+I +HGCFWHGHTC+RG RLP SN +YW KI N RD LR GW H VWECEL++Q R+ +L+RFL+
Sbjct: 1 MRAVKAKDTKPEMQVRRMLFKAGYRYRLHRSDLPGKPDLVFPSRKKIIFVHGCFWHGHTCRRGNRLPKSNRDYWSSKIKRNVERDRTHLSKLRHLGWVTHIVWECELRDQDRVFQQLKRFLD 122
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: UPI0004AE70F9 (DNA mismatch endonuclease Vsr n=1 Tax=Methylopila sp. 73B TaxID=1120792 RepID=UPI0004AE70F9) HSP 1 Score: 167 bits (422), Expect = 5.200e-51 Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = 1
Query: 16 MQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
M+A+KS+DTKPE +VRR H+ GYR+RLH LPG PD+VFP+R KVI +HGCFWHGH C RGAR P +NT+YWR KI+ N ARDAR + L GW T+WECELK RL RL+ FL
Sbjct: 1 MRAVKSRDTKPEMLVRRAAHALGYRFRLHRKDLPGSPDLVFPARKKVIFVHGCFWHGHECARGARTPKTNTDYWRAKIARNVARDARARSALDALGWETLTIWECELKKDTRLAERLKSFL 121
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A3UG24_9PROT (Very short patch repair endonuclease n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UG24_9PROT) HSP 1 Score: 167 bits (423), Expect = 6.270e-51 Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 1
Query: 4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
R R M+A+K KDTKPE IVRRL H+ GYR+RLH LPGKPD+VFP R KVI +HGCFWHGH C RG+R P N EYWR KI+ N RDA Q L + GW +WECE+K++ L +RLR FL
Sbjct: 15 RARVMRAVKGKDTKPEMIVRRLAHALGYRFRLHRKDLPGKPDLVFPGRRKVIFVHGCFWHGHECARGSRQPKQNAEYWRNKIARNVERDADNLQALERLGWQTQVIWECEMKDRDALADRLRAFL 139
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A1Q9AEE1_9HYPH (Very short patch repair endonuclease n=1 Tax=Rhizobium rhizosphaerae TaxID=1672749 RepID=A0A1Q9AEE1_9HYPH) HSP 1 Score: 166 bits (421), Expect = 1.390e-50 Identity = 77/121 (63.64%), Postives = 88/121 (72.73%), Query Frame = 1
Query: 16 MQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
M +KSKDT PE +VRRLLHS GYRYRLH AQLPGKPD+VF R KV+ +HGCFWHGH CKRGAR+P + EYW K++ NR RD R L + GWS+ TVWECELK L RLR FL
Sbjct: 1 MSQVKSKDTTPEIVVRRLLHSMGYRYRLHGAQLPGKPDLVFSGRKKVLFVHGCFWHGHDCKRGARIPATRQEYWLAKVARNRERDVRNVSSLVQAGWSVMTVWECELKAGLALEERLRSFL 121
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A7X3P5X3_9SYNE (Very short patch repair endonuclease n=1 Tax=Synechococcus sp. SB0668_bin_13 TaxID=2604859 RepID=A0A7X3P5X3_9SYNE) HSP 1 Score: 166 bits (420), Expect = 1.580e-50 Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 1
Query: 4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLNKV 387
R RTM+A+K DTKPE +VRRLLH GYRYRLH LPGKPDIVF SR KVI IHGCFWHGH+CKRG RLP +N EYW+ KI+ N R A+ L GW+ T+WECEL ++K + RLR FL++
Sbjct: 6 RSRTMRAVKGHDTKPEMVVRRLLHRMGYRYRLHRKDLPGKPDIVFASRRKVIFIHGCFWHGHSCKRGNRLPKANAEYWKMKIAGNIKRHAKQLDELAAAGWTELTLWECELADEKAIERRLRDFLDET 133
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A239DQD7_9BACT (Very short patch repair endonuclease n=1 Tax=Granulicella rosea TaxID=474952 RepID=A0A239DQD7_9BACT) HSP 1 Score: 166 bits (419), Expect = 1.980e-50 Identity = 76/125 (60.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query: 4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
R RTM+A+KS +T PE VRRLLH+ G RYRLH A LPGKPDIV P+R KV+ +HGCFWHGHTC RGAR P +N EYW +KI NR+RD R + LRK GW + ++WEC++K RL RL+ FL
Sbjct: 8 RSRTMRAVKSSNTAPEMAVRRLLHAMG-RYRLHRADLPGKPDIVLPARGKVVFVHGCFWHGHTCARGARKPRTNVEYWERKIGRNRSRDRRVRAELRKLGWGVLSIWECQIKEPTRLAKRLQAFL 131 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig58101.1.1 >prot_P-wetherbeei_contig58101.1.1 ID=prot_P-wetherbeei_contig58101.1.1|Name=mRNA_P-wetherbeei_contig58101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp MQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIback to top mRNA from alignment at P-wetherbeei_contig58101:101..505- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig58101.1.1 ID=mRNA_P-wetherbeei_contig58101.1.1|Name=mRNA_P-wetherbeei_contig58101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig58101:101..505- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig58101:101..505- >mRNA_P-wetherbeei_contig58101.1.1 ID=mRNA_P-wetherbeei_contig58101.1.1|Name=mRNA_P-wetherbeei_contig58101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig58101:101..505- (Phaeothamnion wetherbeei SAG_119_79)back to top |