mRNA_P-wetherbeei_contig58101.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58101.1.1
Unique NamemRNA_P-wetherbeei_contig58101.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A2E1ED04_9HYPH (Very short patch repair endonuclease n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2E1ED04_9HYPH)

HSP 1 Score: 178 bits (451), Expect = 3.330e-55
Identity = 83/125 (66.40%), Postives = 93/125 (74.40%), Query Frame = 1
Query:    4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
            R R M+A+K KDT PEW VRR+LH+AGYRYRLH  +LPGKPD+ FPSR KVI IHGCFWHGH CKRGAR P SN EYWR KIS N  RDA     LR  GWSI  +WECE+K+    LNRL+ FL
Sbjct:    6 RSRIMRAVKDKDTAPEWSVRRMLHAAGYRYRLHCKELPGKPDLCFPSRKKVIFIHGCFWHGHNCKRGAREPKSNVEYWRAKISRNCERDAAHMAALRSVGWSILILWECEIKSGTATLNRLKAFL 130          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: UPI001C31CA88 (DNA mismatch endonuclease Vsr n=1 Tax=Sphingobium sp. AS12 TaxID=2849495 RepID=UPI001C31CA88)

HSP 1 Score: 175 bits (444), Expect = 3.520e-54
Identity = 78/127 (61.42%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 LRRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLN 381
            LR RTM+A++SKDTKPE IVR+L+H  GYRYRLH   LPG PD+VF +R +V+ +HGCFWHGH CKRGAR P +N EYWR+KI  NRARD+R    L   GW + T+WECEL N++ L +RLR FL+
Sbjct:    7 LRSRTMRAVRSKDTKPEMIVRKLIHGMGYRYRLHRKDLPGSPDLVFAARRRVVFVHGCFWHGHDCKRGARQPKANAEYWREKIERNRARDSRATGGLTANGWLVATIWECELGNREHLKDRLRSFLD 133          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: UPI0015DA33CC (DNA mismatch endonuclease Vsr n=1 Tax=Agrobacterium vitis TaxID=373 RepID=UPI0015DA33CC)

HSP 1 Score: 172 bits (435), Expect = 7.500e-53
Identity = 76/126 (60.32%), Postives = 96/126 (76.19%), Query Frame = 1
Query:    4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLN 381
            R +TM+A++SKDTKPE IVRRLLHS G+R+RLH   LPG PD+VFP RHKVI +HGCFWHGH C RGAR+P +N  YW  K+  NR RD R+ +LL + GW+   VWECE+K++ RL +R+  FLN
Sbjct:    7 RSKTMRAVRSKDTKPELIVRRLLHSLGFRFRLHRRDLPGSPDLVFPGRHKVIFVHGCFWHGHDCSRGARVPKTNQVYWTDKVKRNRERDERSHRLLSELGWTTCVVWECEIKDRVRLTDRVLSFLN 132          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A2W4QV52_9PROT (Very short patch repair endonuclease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QV52_9PROT)

HSP 1 Score: 170 bits (431), Expect = 2.860e-52
Identity = 80/127 (62.99%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    1 LRRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLN 381
            +R +TM A+K KDT+PE +VRRL HS GYRYRLH A LPGKPD+VFPSR KVI +HGCFWHGH C RG+R+P +N  YW  KI  NRARD R +Q LR+ GW + TVWECE K+   L  R+ RFLN
Sbjct:    6 IRSKTMAAVKGKDTEPELVVRRLCHSLGYRYRLHRADLPGKPDLVFPSRRKVIFVHGCFWHGHDCARGSRVPKTNRTYWVAKIGRNRARDERYQQRLRELGWRVLTVWECETKSPG-LKRRIVRFLN 131          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A2D4VGN9_9HYPH (Very short patch repair endonuclease n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D4VGN9_9HYPH)

HSP 1 Score: 167 bits (424), Expect = 2.580e-51
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   16 MQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLN 381
            M+A+K+KDTKPE  VRR+L  AGYRYRLH + LPGKPD+VFPSR K+I +HGCFWHGHTC+RG RLP SN +YW  KI  N  RD      LR  GW  H VWECEL++Q R+  +L+RFL+
Sbjct:    1 MRAVKAKDTKPEMQVRRMLFKAGYRYRLHRSDLPGKPDLVFPSRKKIIFVHGCFWHGHTCRRGNRLPKSNRDYWSSKIKRNVERDRTHLSKLRHLGWVTHIVWECELRDQDRVFQQLKRFLD 122          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: UPI0004AE70F9 (DNA mismatch endonuclease Vsr n=1 Tax=Methylopila sp. 73B TaxID=1120792 RepID=UPI0004AE70F9)

HSP 1 Score: 167 bits (422), Expect = 5.200e-51
Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   16 MQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
            M+A+KS+DTKPE +VRR  H+ GYR+RLH   LPG PD+VFP+R KVI +HGCFWHGH C RGAR P +NT+YWR KI+ N ARDAR +  L   GW   T+WECELK   RL  RL+ FL
Sbjct:    1 MRAVKSRDTKPEMLVRRAAHALGYRFRLHRKDLPGSPDLVFPARKKVIFVHGCFWHGHECARGARTPKTNTDYWRAKIARNVARDARARSALDALGWETLTIWECELKKDTRLAERLKSFL 121          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A3UG24_9PROT (Very short patch repair endonuclease n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UG24_9PROT)

HSP 1 Score: 167 bits (423), Expect = 6.270e-51
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
            R R M+A+K KDTKPE IVRRL H+ GYR+RLH   LPGKPD+VFP R KVI +HGCFWHGH C RG+R P  N EYWR KI+ N  RDA   Q L + GW    +WECE+K++  L +RLR FL
Sbjct:   15 RARVMRAVKGKDTKPEMIVRRLAHALGYRFRLHRKDLPGKPDLVFPGRRKVIFVHGCFWHGHECARGSRQPKQNAEYWRNKIARNVERDADNLQALERLGWQTQVIWECEMKDRDALADRLRAFL 139          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A1Q9AEE1_9HYPH (Very short patch repair endonuclease n=1 Tax=Rhizobium rhizosphaerae TaxID=1672749 RepID=A0A1Q9AEE1_9HYPH)

HSP 1 Score: 166 bits (421), Expect = 1.390e-50
Identity = 77/121 (63.64%), Postives = 88/121 (72.73%), Query Frame = 1
Query:   16 MQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
            M  +KSKDT PE +VRRLLHS GYRYRLH AQLPGKPD+VF  R KV+ +HGCFWHGH CKRGAR+P +  EYW  K++ NR RD R    L + GWS+ TVWECELK    L  RLR FL
Sbjct:    1 MSQVKSKDTTPEIVVRRLLHSMGYRYRLHGAQLPGKPDLVFSGRKKVLFVHGCFWHGHDCKRGARIPATRQEYWLAKVARNRERDVRNVSSLVQAGWSVMTVWECELKAGLALEERLRSFL 121          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A7X3P5X3_9SYNE (Very short patch repair endonuclease n=1 Tax=Synechococcus sp. SB0668_bin_13 TaxID=2604859 RepID=A0A7X3P5X3_9SYNE)

HSP 1 Score: 166 bits (420), Expect = 1.580e-50
Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFLNKV 387
            R RTM+A+K  DTKPE +VRRLLH  GYRYRLH   LPGKPDIVF SR KVI IHGCFWHGH+CKRG RLP +N EYW+ KI+ N  R A+    L   GW+  T+WECEL ++K +  RLR FL++ 
Sbjct:    6 RSRTMRAVKGHDTKPEMVVRRLLHRMGYRYRLHRKDLPGKPDIVFASRRKVIFIHGCFWHGHSCKRGNRLPKANAEYWKMKIAGNIKRHAKQLDELAAAGWTELTLWECELADEKAIERRLRDFLDET 133          
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Match: A0A239DQD7_9BACT (Very short patch repair endonuclease n=1 Tax=Granulicella rosea TaxID=474952 RepID=A0A239DQD7_9BACT)

HSP 1 Score: 166 bits (419), Expect = 1.980e-50
Identity = 76/125 (60.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:    4 RRRTMQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILIHGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIHTVWECELKNQKRLLNRLRRFL 378
            R RTM+A+KS +T PE  VRRLLH+ G RYRLH A LPGKPDIV P+R KV+ +HGCFWHGHTC RGAR P +N EYW +KI  NR+RD R +  LRK GW + ++WEC++K   RL  RL+ FL
Sbjct:    8 RSRTMRAVKSSNTAPEMAVRRLLHAMG-RYRLHRADLPGKPDIVLPARGKVVFVHGCFWHGHTCARGARKPRTNVEYWERKIGRNRSRDRRVRAELRKLGWGVLSIWECQIKEPTRLAKRLQAFL 131          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58101.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E1ED04_9HYPH3.330e-5566.40Very short patch repair endonuclease n=1 Tax=Parvi... [more]
UPI001C31CA883.520e-5461.42DNA mismatch endonuclease Vsr n=1 Tax=Sphingobium ... [more]
UPI0015DA33CC7.500e-5360.32DNA mismatch endonuclease Vsr n=1 Tax=Agrobacteriu... [more]
A0A2W4QV52_9PROT2.860e-5262.99Very short patch repair endonuclease n=1 Tax=Prote... [more]
A0A2D4VGN9_9HYPH2.580e-5161.48Very short patch repair endonuclease n=1 Tax=Parvi... [more]
UPI0004AE70F95.200e-5161.16DNA mismatch endonuclease Vsr n=1 Tax=Methylopila ... [more]
A3UG24_9PROT6.270e-5160.00Very short patch repair endonuclease n=2 Tax=uncla... [more]
A0A1Q9AEE1_9HYPH1.390e-5063.64Very short patch repair endonuclease n=1 Tax=Rhizo... [more]
A0A7X3P5X3_9SYNE1.580e-5060.94Very short patch repair endonuclease n=1 Tax=Synec... [more]
A0A239DQD7_9BACT1.980e-5060.80Very short patch repair endonuclease n=1 Tax=Granu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58101contigP-wetherbeei_contig58101:101..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1120792.JAFV01000001_gene3571
PFAMsVsr
Model size405
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07458
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.45e-52
EggNOG OGsCOG3727@1|root,COG3727@2|Bacteria,1RH1C@1224|Proteobacteria,2UA6G@28211|Alphaproteobacteria,3702N@31993|Methylocystaceae
DescriptionDNA mismatch endonuclease Vsr
Cds size390
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.15389-CDS-P-wetherbeei_contig58101:100..4901683186861.15389-CDS-P-wetherbeei_contig58101:100..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58101 101..490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.1686292-UTR-P-wetherbeei_contig58101:490..5051683186861.1686292-UTR-P-wetherbeei_contig58101:490..505Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58101 491..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58101.1.1prot_P-wetherbeei_contig58101.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58101 101..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58101.1.1

>prot_P-wetherbeei_contig58101.1.1 ID=prot_P-wetherbeei_contig58101.1.1|Name=mRNA_P-wetherbeei_contig58101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MQAIKSKDTKPEWIVRRLLHSAGYRYRLHAAQLPGKPDIVFPSRHKVILI
HGCFWHGHTCKRGARLPHSNTEYWRQKISNNRARDARTKQLLRKTGWSIH
TVWECELKNQKRLLNRLRRFLNKVPHAKS*
back to top

mRNA from alignment at P-wetherbeei_contig58101:101..505-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58101.1.1 ID=mRNA_P-wetherbeei_contig58101.1.1|Name=mRNA_P-wetherbeei_contig58101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig58101:101..505- (Phaeothamnion wetherbeei SAG_119_79)
CTACGCCGGCGCACCATGCAGGCTATCAAAAGCAAAGATACCAAGCCCGA GTGGATCGTTCGCCGGCTTCTGCACAGTGCCGGTTATCGCTACAGACTTC ATGCGGCCCAACTACCCGGAAAGCCTGATATTGTTTTTCCTTCTCGCCAC AAAGTTATTTTGATCCATGGATGTTTTTGGCATGGCCACACCTGTAAGCG CGGCGCTCGCTTACCGCATTCGAACACCGAATATTGGCGACAAAAAATTA GCAACAATCGCGCTCGCGATGCACGCACCAAACAACTGCTAAGAAAAACG GGATGGTCCATTCATACCGTGTGGGAGTGTGAATTAAAGAACCAAAAGCG GCTCCTAAATCGACTGAGGCGCTTCTTGAACAAAGTGCCTCACGCAAAGT CTTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58101:101..505-

>mRNA_P-wetherbeei_contig58101.1.1 ID=mRNA_P-wetherbeei_contig58101.1.1|Name=mRNA_P-wetherbeei_contig58101.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig58101:101..505- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGCTATCAAAAGCAAAGATACCAAGCCCGAGTGGATCGTTCGCCG
GCTTCTGCACAGTGCCGGTTATCGCTACAGACTTCATGCGGCCCAACTAC
CCGGAAAGCCTGATATTGTTTTTCCTTCTCGCCACAAAGTTATTTTGATC
CATGGATGTTTTTGGCATGGCCACACCTGTAAGCGCGGCGCTCGCTTACC
GCATTCGAACACCGAATATTGGCGACAAAAAATTAGCAACAATCGCGCTC
GCGATGCACGCACCAAACAACTGCTAAGAAAAACGGGATGGTCCATTCAT
ACCGTGTGGGAGTGTGAATTAAAGAACCAAAAGCGGCTCCTAAATCGACT
GAGGCGCTTCTTGAACAAAGTGCCTCACGCAAAGTCTTAG
back to top