mRNA_P-wetherbeei_contig57976.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57976.1.1
Unique NamemRNA_P-wetherbeei_contig57976.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: UPI000931A052 (hypothetical protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000931A052)

HSP 1 Score: 80.1 bits (196), Expect = 2.000e-18
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            FTDFEYGSDWARFSRAASKG++C++GGG  DCQ+QARPCK
Sbjct:   73 FTDFEYGSDWARFSRAASKGISCSQGGGSIDCQIQARPCK 112          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: UPI00039C81E9 (hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00039C81E9)

HSP 1 Score: 79.3 bits (194), Expect = 4.140e-18
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGG-FDCQLQARPCK 120
            FTDFEYGSDWARFSRAASKG+TC+ GGGG FDCQ++ARPCK
Sbjct:   73 FTDFEYGSDWARFSRAASKGMTCSGGGGGSFDCQIEARPCK 113          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: UPI0003801B68 (hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI0003801B68)

HSP 1 Score: 65.9 bits (159), Expect = 8.220e-13
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            FTDFEYGSDWARFS+A  K ++C+    G+DCQ++ARPC+
Sbjct:   73 FTDFEYGSDWARFSKAVGKRISCSSSSSGYDCQVEARPCR 112          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: UPI000930204E (hypothetical protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000930204E)

HSP 1 Score: 64.3 bits (155), Expect = 3.470e-12
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            FTDFEYGS WARFS AA+K ++C++ GG + CQ++ARPC+
Sbjct:   74 FTDFEYGSAWARFSNAAAKRVSCSQSGGSYSCQVEARPCR 113          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: UPI0019CC9608 (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019CC9608)

HSP 1 Score: 62.8 bits (151), Expect = 1.250e-11
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            FTD EYG  WARFSRAASK + C+RGG G+ C  +ARPC+
Sbjct:   70 FTDLEYGRAWARFSRAASKKIGCSRGGSGWSCDAEARPCR 109          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: A0A6I0EFT5_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EFT5_HYPSQ)

HSP 1 Score: 60.1 bits (144), Expect = 1.490e-10
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            F D EYGSDWAR+SRA SK + C R   G+ C ++ARPCK
Sbjct:   72 FVDLEYGSDWARYSRAHSKSMKCERSASGWSCMVEARPCK 111          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: UPI00092FEF80 (hypothetical protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI00092FEF80)

HSP 1 Score: 60.1 bits (144), Expect = 1.640e-10
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            FTD EYGS WARFSRA S+ + C+  GGG+ C ++ARPCK
Sbjct:   76 FTDLEYGSAWARFSRAGSRKIGCSPTGGGWTCDVEARPCK 115          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: A0A3S0YS33_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A3S0YS33_HYPSQ)

HSP 1 Score: 59.7 bits (143), Expect = 2.420e-10
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            FTDFEYGSDWA +S A+SK ++C+  GG + C L ARPC+
Sbjct:   75 FTDFEYGSDWAHWSLASSKSVSCSGAGGSWGCDLNARPCR 114          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: A0A6I0EP08_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EP08_HYPSQ)

HSP 1 Score: 57.8 bits (138), Expect = 1.150e-9
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            FTD EYGS WARFSRAAS+ + C+R   G+ C  + RPC+
Sbjct:   70 FTDLEYGSSWARFSRAASRRMGCSRSAAGWTCDAEGRPCR 109          
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Match: UPI000AFBCD6A (hypothetical protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI000AFBCD6A)

HSP 1 Score: 57.0 bits (136), Expect = 4.140e-9
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    1 FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK 120
            F D EYGSDWA++ +AA K ++C + G G+ C + ARPCK
Sbjct:   98 FADLEYGSDWAKYGKAAGKSVSCNQSGSGWGCDVAARPCK 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57976.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
UPI000931A0522.000e-1882.50hypothetical protein n=1 Tax=Hyphomicrobium sp. CS... [more]
UPI00039C81E94.140e-1885.37hypothetical protein n=1 Tax=Hyphomicrobium zavarz... [more]
UPI0003801B688.220e-1362.50hypothetical protein n=1 Tax=Hyphomicrobium zavarz... [more]
UPI000930204E3.470e-1262.50hypothetical protein n=1 Tax=Hyphomicrobium sp. CS... [more]
UPI0019CC96081.250e-1165.00Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A6I0EFT5_HYPSQ1.490e-1060.00Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
UPI00092FEF801.640e-1062.50hypothetical protein n=1 Tax=Hyphomicrobium sp. ND... [more]
A0A3S0YS33_HYPSQ2.420e-1060.00Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A6I0EP08_HYPSQ1.150e-957.50Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
UPI000AFBCD6A4.140e-952.50hypothetical protein n=1 Tax=Hyphomicrobium sp. ND... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57976contigP-wetherbeei_contig57976:384..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.246855-CDS-P-wetherbeei_contig57976:383..5061683186859.246855-CDS-P-wetherbeei_contig57976:383..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57976 384..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57976.1.1prot_P-wetherbeei_contig57976.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57976 384..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57976.1.1

>prot_P-wetherbeei_contig57976.1.1 ID=prot_P-wetherbeei_contig57976.1.1|Name=mRNA_P-wetherbeei_contig57976.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
FTDFEYGSDWARFSRAASKGLTCTRGGGGFDCQLQARPCK*
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mRNA from alignment at P-wetherbeei_contig57976:384..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57976.1.1 ID=mRNA_P-wetherbeei_contig57976.1.1|Name=mRNA_P-wetherbeei_contig57976.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig57976:384..506- (Phaeothamnion wetherbeei SAG_119_79)
TTCACCGATTTCGAGTACGGCAGCGACTGGGCGCGCTTCTCGCGTGCGGC CAGCAAGGGCCTGACCTGCACGCGCGGTGGCGGCGGGTTCGACTGCCAGC TCCAGGCGCGGCCCTGTAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57976:384..506-

>mRNA_P-wetherbeei_contig57976.1.1 ID=mRNA_P-wetherbeei_contig57976.1.1|Name=mRNA_P-wetherbeei_contig57976.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig57976:384..506- (Phaeothamnion wetherbeei SAG_119_79)
TTCACCGATTTCGAGTACGGCAGCGACTGGGCGCGCTTCTCGCGTGCGGC
CAGCAAGGGCCTGACCTGCACGCGCGGTGGCGGCGGGTTCGACTGCCAGC
TCCAGGCGCGGCCCTGTAAGTAA
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