mRNA_P-wetherbeei_contig5796.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5796.1.1
Unique NamemRNA_P-wetherbeei_contig5796.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5796.1.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.440e-10
Identity = 46/93 (49.46%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   31 AADGSGAPLRVHLRQWGCAFTEGLWAAVLAAFAAAPAELLAGPAGAAAGVDRLWDEYARLLVVQREYGNAGAEPVAALAVDLAALLARIDDCG 309
            A  G GA + VH+R WG  FTE +WA VL A  AAPA L+ G AG AAGV +L + Y  L+ VQ    N G E VA LAV+L  LL  + + G
Sbjct: 1788 AVGGKGAAVLVHIRLWGQYFTEAVWAGVLGALRAAPALLVGGAAGQAAGVPKLLEAYVNLVAVQLMVDN-GPE-VAQLAVNLRELLEGLGEMG 1878
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BLAST of mRNA_P-wetherbeei_contig5796.1.1 vs. uniprot
Match: A0A6H5L4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.570e-8
Identity = 46/96 (47.92%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   31 AADGSGAPL---RVHLRQWGCAFTEGLWAAVLAAFAAAPAELLAGPAGAAAGVDRLWDEYARLLVVQREYGNAGAEPVAALAVDLAALLARIDDCG 309
            A  G GA +    VH+R WG  FTE +WA VL A  AAPA L+ G AG AAGV +L + Y  L+ VQ    N G E VA LAV+L  LL  + + G
Sbjct: 1159 AVGGKGAAVLVSEVHVRLWGQYFTEAVWAGVLGALRAAPALLVGGAAGQAAGVPKLLEAYVNLVAVQLMVDN-GPE-VAQLAVNLRELLEGLGEMG 1252
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5796.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ23_ECTSI3.440e-1049.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4X7_9PHAE1.570e-847.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5796contigP-wetherbeei_contig5796:2172..2952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size783
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004440.3
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.9539266-CDS-P-wetherbeei_contig5796:2171..28731683186858.9539266-CDS-P-wetherbeei_contig5796:2171..2873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5796 2172..2873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.9650235-UTR-P-wetherbeei_contig5796:2873..29521683186858.9650235-UTR-P-wetherbeei_contig5796:2873..2952Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5796 2874..2952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5796.1.1prot_P-wetherbeei_contig5796.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5796 2172..2873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5796.1.1

>prot_P-wetherbeei_contig5796.1.1 ID=prot_P-wetherbeei_contig5796.1.1|Name=mRNA_P-wetherbeei_contig5796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp
TTETPPIVATAADGSGAPLRVHLRQWGCAFTEGLWAAVLAAFAAAPAELL
AGPAGAAAGVDRLWDEYARLLVVQREYGNAGAEPVAALAVDLAALLARID
DCGNGSGGGASGENGGGGEGSLKGGTLKGDANIHGGESREDRGDAAGAQE
GDGSRRKKRKTPIWQGRLDRRVPGLWERWSIRRVLETFLSVSDGSGDEKA
ASAVDAPAADEADGGEAAAGAEQALSVGSPFDW*
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mRNA from alignment at P-wetherbeei_contig5796:2172..2952+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5796.1.1 ID=mRNA_P-wetherbeei_contig5796.1.1|Name=mRNA_P-wetherbeei_contig5796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=781bp|location=Sequence derived from alignment at P-wetherbeei_contig5796:2172..2952+ (Phaeothamnion wetherbeei SAG_119_79)
ACGACGGAGACGCCGCCAATCGTCGCGACCGCTGCCGACGGCAGTGGCGC
GCCGCTGCGGGTCCACCTGCGGCAGTGGGGCTGCGCCTTCACGGAGGGGC
TGTGGGCGGCGGTACTTGCGGCGTTCGCGGCGGCGCCGGCTGAGCTCCTG
GCTGGCCCGGCCGGAGCCGCCGCGGGCGTGGATCGGCTGTGGGACGAATA
CGCGAGGCTGCTGGTCGTCCAGCGCGAGTACGGCAATGCCGGTGCCGAGC
CGGTCGCGGCGCTCGCGGTGGACCTCGCGGCGCTGCTGGCCCGCATCGAT
GACTGCGGCAACGGGAGCGGTGGCGGCGCGAGTGGCGAGAATGGCGGCGG
CGGCGAGGGAAGTTTAAAAGGCGGCACGCTTAAAGGCGACGCGAATATAC
ATGGGGGAGAAAGCAGAGAAGATAGAGGCGACGCGGCAGGAGCACAAGAG
GGCGACGGCAGCCGCCGCAAGAAACGGAAAACACCGATCTGGCAAGGCAG
GCTGGACCGGCGAGTGCCGGGCCTCTGGGAGCGCTGGAGCATCCGCAGGG
TGCTGGAGACATTCTTGTCGGTTTCGGACGGTAGCGGTGACGAGAAGGCG
GCCTCTGCCGTCGACGCTCCTGCTGCTGACGAAGCCGACGGCGGCGAGGC
TGCGGCGGGTGCTGAGCAGGCCCTGAGCGTGGGCTCCCCTTTTGACTGGT
AAGTAGAAACGGCGGCCGCAGGTTGCTAAAACGTGTAAATAACAGTCATT
GAGAGCGTGCCTAGGCTTCCCTCTCTCCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5796:2172..2952+

>mRNA_P-wetherbeei_contig5796.1.1 ID=mRNA_P-wetherbeei_contig5796.1.1|Name=mRNA_P-wetherbeei_contig5796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig5796:2172..2952+ (Phaeothamnion wetherbeei SAG_119_79)
ACGACGGAGACGCCGCCAATCGTCGCGACCGCTGCCGACGGCAGTGGCGC
GCCGCTGCGGGTCCACCTGCGGCAGTGGGGCTGCGCCTTCACGGAGGGGC
TGTGGGCGGCGGTACTTGCGGCGTTCGCGGCGGCGCCGGCTGAGCTCCTG
GCTGGCCCGGCCGGAGCCGCCGCGGGCGTGGATCGGCTGTGGGACGAATA
CGCGAGGCTGCTGGTCGTCCAGCGCGAGTACGGCAATGCCGGTGCCGAGC
CGGTCGCGGCGCTCGCGGTGGACCTCGCGGCGCTGCTGGCCCGCATCGAT
GACTGCGGCAACGGGAGCGGTGGCGGCGCGAGTGGCGAGAATGGCGGCGG
CGGCGAGGGAAGTTTAAAAGGCGGCACGCTTAAAGGCGACGCGAATATAC
ATGGGGGAGAAAGCAGAGAAGATAGAGGCGACGCGGCAGGAGCACAAGAG
GGCGACGGCAGCCGCCGCAAGAAACGGAAAACACCGATCTGGCAAGGCAG
GCTGGACCGGCGAGTGCCGGGCCTCTGGGAGCGCTGGAGCATCCGCAGGG
TGCTGGAGACATTCTTGTCGGTTTCGGACGGTAGCGGTGACGAGAAGGCG
GCCTCTGCCGTCGACGCTCCTGCTGCTGACGAAGCCGACGGCGGCGAGGC
TGCGGCGGGTGCTGAGCAGGCCCTGAGCGTGGGCTCCCCTTTTGACTGGT
AA
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