mRNA_P-wetherbeei_contig57954.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57954.1.1
Unique NamemRNA_P-wetherbeei_contig57954.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A127F6C3_9HYPH (Ion transport 2 domain-containing protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F6C3_9HYPH)

HSP 1 Score: 181 bits (459), Expect = 2.950e-56
Identity = 89/136 (65.44%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    1 AGGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAWFMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMKMADVQIGRR 408
            AGG VS +NFG+HA++TG++VV  RH A  TDDLHVF R++ALL  T++AL +AH +EI++WA F    GI       FEFAFENY ALGYGD V GG +RLIGPI ALNGLLLIGWSVAIIFEVMKMADVQ+ R+
Sbjct:    7 AGGLVSLVNFGLHAIITGIVVVAARHTAAATDDLHVFARVSALLMITMVALMIAHTVEIAVWASFYALNGIETEKASAFEFAFENYTALGYGDAVPGGRFRLIGPITALNGLLLIGWSVAIIFEVMKMADVQVARK 142          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A537KS25_9PROT (Two pore domain potassium channel family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537KS25_9PROT)

HSP 1 Score: 171 bits (433), Expect = 4.150e-52
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    1 AGGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAWFMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMKMADVQIGR 405
            AGG VSF+NFGIHA++TG+++  TRH A RTD LH F RLTALLT T+I L +AHV EI +WA +    G+   +  PFEFAFENY ALGYGD V     RL+GPI ALNGLLLIGWSVAIIFEVM+MA+VQ+ R
Sbjct:   19 AGGLVSFLNFGIHALVTGIVIEATRHTAKRTDHLHAFFRLTALLTITVICLMIAHVCEIGVWAAYYDFTGLKFRSATPFEFAFENYTALGYGDPVPPESRRLLGPITALNGLLLIGWSVAIIFEVMRMAEVQVAR 153          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A1Q4DBI6_9HYPH (Ion_trans_2 domain-containing protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DBI6_9HYPH)

HSP 1 Score: 157 bits (396), Expect = 7.290e-47
Identity = 83/123 (67.48%), Postives = 93/123 (75.61%), Query Frame = 1
Query:   46 MTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAWFMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMKMADVQIGRRSR 414
            MT  IVV+T  IA RT  LHV  RL  LLT T++AL +AHVLEI+LWA F    GI APNV  FEFAFENY ALGYGD V G G RLIGP+ +LNGLLLIGWSVAIIFEVM+MA+VQ  +R R
Sbjct:    1 MTAAIVVITNRIAHRTGHLHVVARLIPLLTVTMVALMIAHVLEIALWAAFYDFAGIVAPNVNSFEFAFENYTALGYGDAVPGTGQRLIGPVTSLNGLLLIGWSVAIIFEVMRMAEVQFEKRPR 123          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A1Q5SAS8_9BRAD (Metal transporter n=1 Tax=Bradyrhizobium sp. NAS80.1 TaxID=1680159 RepID=A0A1Q5SAS8_9BRAD)

HSP 1 Score: 110 bits (275), Expect = 3.620e-28
Identity = 60/134 (44.78%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    4 GGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAW-FMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMKMADVQIG 402
            G  VS IN GIHA++T + + + R  A R  + H   RL  ++ AT   L VAH+LEI +WAW + +     AP+ +   FAF NY  LGYGD+     WRLIGP+ A+NG+LL GWS AI+FEV++     +G
Sbjct:    8 GALVSVINIGIHALVTVVAIWIARSAALRKTE-HPRWRLMGVMMATAAVLKVAHMLEILVWAWTYDIVDATAAPDSDLLYFAFVNYTTLGYGDITPAPAWRLIGPMTAMNGVLLFGWSAAILFEVLRKTLDYLG 140          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A0R3D017_9BRAD (Metal transporter n=6 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3D017_9BRAD)

HSP 1 Score: 106 bits (265), Expect = 1.020e-26
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    4 GGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAW-FMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMKMADVQIG 402
            G  +S +N GIHA++T + V + R  AG        + L  ++ AT   L VAH LE+ +WAW + + + + AP  +   FAF NY  LGYGD+     WRLIGP+ A+NG+LL GWS AI+FEV++     +G
Sbjct:    8 GALISAVNIGIHALVTLVAVAIARS-AGLRKVERPRLHLMGVMVATAAVLNVAHALEVLIWAWTYALVRAVAAPESDLVYFAFVNYTTLGYGDITPVREWRLIGPLTAMNGVLLFGWSAAILFEVLRKTLDHVG 140          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A1H8JPF9_9BRAD (Ion channel n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A1H8JPF9_9BRAD)

HSP 1 Score: 106 bits (264), Expect = 1.400e-26
Identity = 59/133 (44.36%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    4 GGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAWFMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMKMADVQIG 402
            G  VS IN GIHA++T + V + R  AG        ++L A++ AT   L VAH LE+ +WAW        AP  +   FAF NY  LGYGD+     WRLIGP+ A+NG+LL GWS AI+FEV++     +G
Sbjct:    8 GALVSAINIGIHALVTVVAVAIARG-AGHRRTGRPRLQLMAVMVATAAVLEVAHALEVLVWAWTYHIVQAAAPGSDLLYFAFVNYTTLGYGDITPVREWRLIGPLTAMNGVLLFGWSAAILFEVLRKTLDYVG 139          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: UPI001BA84D98 (two pore domain potassium channel family protein n=1 Tax=Bradyrhizobium manausense TaxID=989370 RepID=UPI001BA84D98)

HSP 1 Score: 105 bits (262), Expect = 2.520e-26
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    4 GGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAWFMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMK-----MADVQ 396
            G  VS IN GIHA++T + + + R I  R  +    ++L  ++ A   AL VAH+LEI +WAW         P  +   FAF NY  LGYGD+V    WRLIGP+ A+NG+LL GWS A++FEV++     +ADV+
Sbjct:    8 GALVSAINIGIHALVTVVAIAIARSIGLRKTE-RPRLQLMGVMIAAAAALKVAHMLEIVVWAWTYHIVQAADPGSDLLYFAFVNYTTLGYGDIVPVQAWRLIGPLTAMNGVLLFGWSAAVLFEVLRKTLDHLADVK 142          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A7S7URR2_9BRAD (Two pore domain potassium channel family protein n=1 Tax=Bradyrhizobium sp. CCBAU 53338 TaxID=1325111 RepID=A0A7S7URR2_9BRAD)

HSP 1 Score: 103 bits (258), Expect = 9.830e-26
Identity = 56/134 (41.79%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    4 GGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAW-FMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMKMADVQIG 402
            G  VS IN GIHA++T + V + R  AG    +   + L  ++ AT   L +AH LEI +WAW + + +     + E   FAF NY  LGYGD+     WRL+GP+ A+NG+LL GWS AI+FEV++     +G
Sbjct:    8 GALVSAINIGIHALVTVVAVAIARS-AGLRVTVRPRLHLMGVMVATAAVLEIAHALEILVWAWTYDIVRAAPVSDSELLYFAFVNYTTLGYGDITPVQAWRLLGPLTAMNGVLLFGWSAAILFEVLRKTLDHVG 140          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A1E3W752_9HYPH (Ion_trans_2 domain-containing protein n=1 Tax=Methyloceanibacter superfactus TaxID=1774969 RepID=A0A1E3W752_9HYPH)

HSP 1 Score: 103 bits (258), Expect = 1.100e-25
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    4 GGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIALTVAHVLEISLWAWFMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMKMAD 390
            GG  S  N  +HA++ G I  + R +      +  F++ T ++ AT   L + H  E+ LWA+   A G T PN +   FAF NY  LGYGDVV    W L+GP+ ALNG++LIGWS A+IFE+++ + 
Sbjct:   17 GGGASLANLIVHAILLGAIAWVVRRLRMSDGSIPSFLQYTLVIVATGTLLVIGHFGEVVLWAYTYAAVGATPPNTDLVYFAFGNYTTLGYGDVVPVPKWHLLGPMTALNGVMLIGWSTALIFEILRRSS 145          
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Match: A0A7S9D9E2_9BRAD (Two pore domain potassium channel family protein n=1 Tax=Bradyrhizobium genosp. B TaxID=83627 RepID=A0A7S9D9E2_9BRAD)

HSP 1 Score: 103 bits (256), Expect = 2.020e-25
Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    4 GGFVSFINFGIHAMMTGLIVVMTRHIAGR---TDDLHVFMRLTALLTATLIALTVAHVLEISLWAWFMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGWRLIGPIMALNGLLLIGWSVAIIFEVMK 381
            G  VS I+ GIHAM T + + + R  + R   T  LH    L  ++ AT  AL VAH LEI +WAW         P  +   FAF NY  LGYGD+   G WRLIGP+ A+NG+LL GWS AI+FEV++
Sbjct:    8 GALVSAIDIGIHAMATVVAISIARAASLRLTETPRLH----LMGVMIATAAALMVAHTLEILVWAWTYGIIQAAPPGSDLLYFAFVNYTTLGYGDITPVGEWRLIGPLTAMNGILLFGWSAAILFEVLR 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57954.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127F6C3_9HYPH2.950e-5665.44Ion transport 2 domain-containing protein n=1 Tax=... [more]
A0A537KS25_9PROT4.150e-5264.44Two pore domain potassium channel family protein n... [more]
A0A1Q4DBI6_9HYPH7.290e-4767.48Ion_trans_2 domain-containing protein n=1 Tax=Rhiz... [more]
A0A1Q5SAS8_9BRAD3.620e-2844.78Metal transporter n=1 Tax=Bradyrhizobium sp. NAS80... [more]
A0A0R3D017_9BRAD1.020e-2641.79Metal transporter n=6 Tax=Bradyrhizobium TaxID=374... [more]
A0A1H8JPF9_9BRAD1.400e-2644.36Ion channel n=2 Tax=unclassified Bradyrhizobium Ta... [more]
UPI001BA84D982.520e-2643.38two pore domain potassium channel family protein n... [more]
A0A7S7URR2_9BRAD9.830e-2641.79Two pore domain potassium channel family protein n... [more]
A0A1E3W752_9HYPH1.100e-2541.09Ion_trans_2 domain-containing protein n=1 Tax=Meth... [more]
A0A7S9D9E2_9BRAD2.020e-2546.51Two pore domain potassium channel family protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57954contigP-wetherbeei_contig57954:6..422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1038867.AXAY01000032_gene4340
PFAMsIon_trans_2
Model size417
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.23e-26
EggNOG OGsCOG1226@1|root,32YV7@2|Bacteria,1N7MV@1224|Proteobacteria,2U76Q@28211|Alphaproteobacteria,3JYY2@41294|Bradyrhizobiaceae
DescriptionIon channel
Cds size417
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.921446-CDS-P-wetherbeei_contig57954:5..4221683186858.921446-CDS-P-wetherbeei_contig57954:5..422Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57954 6..422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57954.1.1prot_P-wetherbeei_contig57954.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57954 6..422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57954.1.1

>prot_P-wetherbeei_contig57954.1.1 ID=prot_P-wetherbeei_contig57954.1.1|Name=mRNA_P-wetherbeei_contig57954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
AGGFVSFINFGIHAMMTGLIVVMTRHIAGRTDDLHVFMRLTALLTATLIA
LTVAHVLEISLWAWFMVAKGITAPNVEPFEFAFENYVALGYGDVVAGGGW
RLIGPIMALNGLLLIGWSVAIIFEVMKMADVQIGRRSR*
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mRNA from alignment at P-wetherbeei_contig57954:6..422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57954.1.1 ID=mRNA_P-wetherbeei_contig57954.1.1|Name=mRNA_P-wetherbeei_contig57954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig57954:6..422+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGGCGGCTTTGTCAGCTTCATCAATTTCGGTATTCACGCGATGATGAC GGGTCTCATCGTTGTGATGACTCGGCATATCGCCGGCCGGACCGACGACC TGCATGTCTTCATGCGTCTCACCGCCTTGCTGACGGCCACGCTGATCGCG CTGACCGTTGCGCACGTTCTAGAGATATCTCTGTGGGCGTGGTTTATGGT CGCGAAGGGCATCACTGCCCCGAATGTCGAGCCGTTCGAATTCGCGTTCG AAAACTATGTGGCCCTGGGATACGGCGACGTGGTTGCGGGCGGCGGCTGG CGTCTGATCGGCCCGATCATGGCGCTCAACGGCCTGTTGCTGATCGGCTG GTCGGTCGCGATCATCTTCGAGGTCATGAAAATGGCCGATGTCCAGATCG GGCGCCGCTCCCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57954:6..422+

>mRNA_P-wetherbeei_contig57954.1.1 ID=mRNA_P-wetherbeei_contig57954.1.1|Name=mRNA_P-wetherbeei_contig57954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig57954:6..422+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGGCGGCTTTGTCAGCTTCATCAATTTCGGTATTCACGCGATGATGAC
GGGTCTCATCGTTGTGATGACTCGGCATATCGCCGGCCGGACCGACGACC
TGCATGTCTTCATGCGTCTCACCGCCTTGCTGACGGCCACGCTGATCGCG
CTGACCGTTGCGCACGTTCTAGAGATATCTCTGTGGGCGTGGTTTATGGT
CGCGAAGGGCATCACTGCCCCGAATGTCGAGCCGTTCGAATTCGCGTTCG
AAAACTATGTGGCCCTGGGATACGGCGACGTGGTTGCGGGCGGCGGCTGG
CGTCTGATCGGCCCGATCATGGCGCTCAACGGCCTGTTGCTGATCGGCTG
GTCGGTCGCGATCATCTTCGAGGTCATGAAAATGGCCGATGTCCAGATCG
GGCGCCGCTCCCGTTGA
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