mRNA_P-wetherbeei_contig5792.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5792.1.1
Unique NamemRNA_P-wetherbeei_contig5792.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5792.1.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.720e-16
Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 1 
Query: 1153 RARGKVRQRFRDMFEAGMRRLQLPEASSMVLACVLAFDVESEAYEMLVQGADRSRGGNGGEEYRVKARSLRFNVAYEQNPDLFVDVLAGKVSAEELCGMTDEQLASRKQQEERQKVREESVHDHWRREGADGKAAADGAALVFKDGDFVAVKELK 1617
            R R KV  RFR++F  GM  L +  A + VL  +LA+D+E E     +    R+  G     Y+ KA+SLRFN+ + +NP+LF D+L+G  S + LCGM+ ++LAS   +EER+++R+ES   H R+E        +G  +V+KDG    + ++K
Sbjct: 1043 RFRHKVMDRFRELFADGMAELGVDAADAAVLCGMLAWDLEHE-----LNAFSRTNRGV----YKEKAQSLRFNIKFAKNPELFKDLLSGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHLRQED-------EGNEIVYKDGALQKIDKVK 1181
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5792.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF7_ECTSI2.720e-1638.06TFIIS central domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5792contigP-wetherbeei_contig5792:237..2277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog264402.Cagra.7526s0011.1.p
PFAMsSPOC,TFIIS_M
Model size1620
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0007275,GO:0008150,GO:0032501,GO:0032502,GO:0048856
Exons2
Evalue5.37e-05
EggNOG OGsKOG1634@1|root,KOG1634@2759|Eukaryota,37J5E@33090|Viridiplantae,3GE2K@35493|Streptophyta,3HT5C@3699|Brassicales
DescriptionSPOC domain
Cds size1617
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.650356-CDS-P-wetherbeei_contig5792:236..16581683186858.650356-CDS-P-wetherbeei_contig5792:236..1658Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5792 237..1658 +
1683186858.6598117-CDS-P-wetherbeei_contig5792:2080..22751683186858.6598117-CDS-P-wetherbeei_contig5792:2080..2275Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5792 2081..2275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5792.1.1prot_P-wetherbeei_contig5792.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5792 237..2275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5792.1.1

>prot_P-wetherbeei_contig5792.1.1 ID=prot_P-wetherbeei_contig5792.1.1|Name=mRNA_P-wetherbeei_contig5792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=539bp
GTAAGWKGGHSLSGRTGGGGGGGGGGGRCGAAAAAPTATAAAGAVAAAGG
GGRTGRQAAQSARDRMKGWTATLTRGERCGSGDPNAPFNGGGGGGTDYGE
DDGAWVPPPSSSGKAAFGGGSEGSAGAQHRKTPSGGAPRLDSAAGALAHL
LPPTGPRAPVRGPKCTRTGCKVERAPGSAGTYCGDACALKARHEALRAAI
AVQQRRAVAWAEAGAATPAPLAAVNAAGAPAAAIVAQSVVAVGAPPLPPQ
LPGPSLTAASDKPAAKAAPAAPAAAVVAKPKAAGPVTSPLGEAELLRIDE
QISSMGGLLHEVLEASAGTAAGTAVATGDGRAVEAAAAVGAAPGALSPVQ
AATAAVTLAAAAQAAAVAAALERLQTGVDADKTDRARGKVRQRFRDMFEA
GMRRLQLPEASSMVLACVLAFDVESEAYEMLVQGADRSRGGNGGEEYRVK
ARSLRFNVAYEQNPDLFVDVLAGKVSAEELCGMTDEQLASRKQQEERQKV
REESVHDHWRREGADGKAAADGAALVFKDGDFVAVKELK
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mRNA from alignment at P-wetherbeei_contig5792:237..2277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5792.1.1 ID=mRNA_P-wetherbeei_contig5792.1.1|Name=mRNA_P-wetherbeei_contig5792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2041bp|location=Sequence derived from alignment at P-wetherbeei_contig5792:237..2277+ (Phaeothamnion wetherbeei SAG_119_79)
GGGACAGCAGCGGGCTGGAAAGGTGGCCACAGCTTGAGTGGTCGCACCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCGGTGTGGCGCTGCTGCGG
CGGCGCCTACTGCTACCGCGGCCGCGGGGGCGGTTGCGGCTGCCGGCGGC
GGCGGGCGCACCGGCCGGCAGGCCGCGCAATCCGCTCGGGACCGCATGAA
GGGTTGGACGGCGACTCTGACGCGCGGCGAACGCTGTGGGAGCGGCGACC
CGAATGCTCCTTTTAACGGCGGCGGTGGCGGCGGCACGGACTACGGCGAG
GACGACGGGGCGTGGGTGCCGCCGCCGTCGTCATCCGGAAAGGCTGCGTT
TGGCGGCGGCAGCGAAGGATCGGCGGGGGCGCAGCACCGAAAGACGCCGT
CGGGGGGCGCGCCGCGCCTCGACAGCGCTGCCGGCGCTCTCGCGCACCTG
CTGCCGCCGACAGGACCACGGGCACCGGTACGCGGTCCAAAGTGCACCCG
GACCGGCTGCAAGGTGGAACGCGCGCCCGGCAGCGCCGGCACATACTGCG
GGGATGCGTGCGCGCTCAAGGCGCGCCACGAGGCGCTGCGGGCGGCGATT
GCGGTGCAGCAGCGGCGCGCGGTAGCGTGGGCAGAGGCGGGCGCCGCTAC
GCCGGCGCCGCTGGCGGCCGTCAACGCCGCAGGAGCGCCTGCCGCGGCCA
TTGTGGCGCAATCGGTTGTTGCTGTCGGGGCGCCGCCGCTGCCGCCGCAA
CTGCCTGGGCCATCATTAACAGCAGCGTCAGACAAACCGGCGGCCAAAGC
GGCGCCAGCGGCTCCCGCAGCTGCGGTGGTGGCAAAGCCGAAGGCGGCTG
GGCCGGTGACGTCACCGTTGGGAGAGGCGGAGCTGCTGCGGATCGATGAG
CAGATCTCTTCGATGGGGGGACTGCTGCACGAGGTCCTGGAAGCGTCCGC
CGGCACCGCCGCCGGAACCGCCGTCGCCACCGGCGACGGCAGGGCGGTCG
AAGCAGCGGCAGCGGTAGGAGCGGCGCCCGGAGCGCTTTCGCCGGTGCAG
GCAGCGACCGCGGCCGTGACATTGGCGGCCGCGGCGCAAGCGGCGGCGGT
AGCGGCGGCGCTGGAGCGGCTCCAGACGGGCGTAGATGCCGACAAGACAG
ATCGTGCGCGGGGCAAGGTCCGACAGCGCTTCCGGGACATGTTCGAGGCC
GGCATGCGACGGCTGCAGCTGCCGGAGGCTTCGTCGATGGTGCTGGCGTG
CGTCCTCGCCTTCGACGTCGAGTCGGAGGCATACGAGATGCTGGTGCAGG
GTGCTGACCGGAGCCGCGGTGGAAACGGCGGGGAGGAGTACCGGGTGAAG
GCGCGCTCGCTACGGTTCAACGTGGCGTACGAGCAGAACCCTGACCTCTT
TGTCGACGTGCTCGCGGGCAAGGTAAGCGAAAGGGAAGAAGGGAGACTGT
GAGATCGGTACGGTTGTCGTTGTGAGTTGGGGCAGGTTTTTCCGGTGGCG
TAACTGATGGTGGTGATATGGCGGCGGCAGCGGGTGGTGGAAGCGTGGCG
GCCTCTGCGGTGGTGGCGCTGTGGCGACGGCAGCATTGCGCTGGTTGTTT
TGCTGCATCGTGCTTTTCCCTCCCCGAACCACCTTTGTTCACACTTTCTG
CTTTAGCCGTTCTCAGAACGCTCGAATACGGCCTACATTCGCAACGCGCC
CATTTCAGGTCTAATTTATTAAGCGTAATTTGACCAATCTCATCCTGAAT
TGATTGACGGGCTGCACTTTGCTGTACGGCTGTTCACACAGCTCACCCTT
TTCTGCCCACCCGCCGGTACTTCCACCGAACGTGCCGGCGGCAGGTGAGC
GCGGAAGAGCTCTGCGGCATGACGGACGAGCAGCTGGCGAGCCGCAAGCA
GCAGGAGGAGCGCCAGAAGGTCCGCGAGGAGTCCGTGCACGACCACTGGC
GCCGCGAGGGTGCCGACGGCAAGGCCGCCGCCGATGGCGCCGCGCTCGTC
TTCAAGGACGGCGACTTTGTGGCTGTGAAAGAGCTCAAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5792:237..2277+

>mRNA_P-wetherbeei_contig5792.1.1 ID=mRNA_P-wetherbeei_contig5792.1.1|Name=mRNA_P-wetherbeei_contig5792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1617bp|location=Sequence derived from alignment at P-wetherbeei_contig5792:237..2277+ (Phaeothamnion wetherbeei SAG_119_79)
GGGACAGCAGCGGGCTGGAAAGGTGGCCACAGCTTGAGTGGTCGCACCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCGGTGTGGCGCTGCTGCGG
CGGCGCCTACTGCTACCGCGGCCGCGGGGGCGGTTGCGGCTGCCGGCGGC
GGCGGGCGCACCGGCCGGCAGGCCGCGCAATCCGCTCGGGACCGCATGAA
GGGTTGGACGGCGACTCTGACGCGCGGCGAACGCTGTGGGAGCGGCGACC
CGAATGCTCCTTTTAACGGCGGCGGTGGCGGCGGCACGGACTACGGCGAG
GACGACGGGGCGTGGGTGCCGCCGCCGTCGTCATCCGGAAAGGCTGCGTT
TGGCGGCGGCAGCGAAGGATCGGCGGGGGCGCAGCACCGAAAGACGCCGT
CGGGGGGCGCGCCGCGCCTCGACAGCGCTGCCGGCGCTCTCGCGCACCTG
CTGCCGCCGACAGGACCACGGGCACCGGTACGCGGTCCAAAGTGCACCCG
GACCGGCTGCAAGGTGGAACGCGCGCCCGGCAGCGCCGGCACATACTGCG
GGGATGCGTGCGCGCTCAAGGCGCGCCACGAGGCGCTGCGGGCGGCGATT
GCGGTGCAGCAGCGGCGCGCGGTAGCGTGGGCAGAGGCGGGCGCCGCTAC
GCCGGCGCCGCTGGCGGCCGTCAACGCCGCAGGAGCGCCTGCCGCGGCCA
TTGTGGCGCAATCGGTTGTTGCTGTCGGGGCGCCGCCGCTGCCGCCGCAA
CTGCCTGGGCCATCATTAACAGCAGCGTCAGACAAACCGGCGGCCAAAGC
GGCGCCAGCGGCTCCCGCAGCTGCGGTGGTGGCAAAGCCGAAGGCGGCTG
GGCCGGTGACGTCACCGTTGGGAGAGGCGGAGCTGCTGCGGATCGATGAG
CAGATCTCTTCGATGGGGGGACTGCTGCACGAGGTCCTGGAAGCGTCCGC
CGGCACCGCCGCCGGAACCGCCGTCGCCACCGGCGACGGCAGGGCGGTCG
AAGCAGCGGCAGCGGTAGGAGCGGCGCCCGGAGCGCTTTCGCCGGTGCAG
GCAGCGACCGCGGCCGTGACATTGGCGGCCGCGGCGCAAGCGGCGGCGGT
AGCGGCGGCGCTGGAGCGGCTCCAGACGGGCGTAGATGCCGACAAGACAG
ATCGTGCGCGGGGCAAGGTCCGACAGCGCTTCCGGGACATGTTCGAGGCC
GGCATGCGACGGCTGCAGCTGCCGGAGGCTTCGTCGATGGTGCTGGCGTG
CGTCCTCGCCTTCGACGTCGAGTCGGAGGCATACGAGATGCTGGTGCAGG
GTGCTGACCGGAGCCGCGGTGGAAACGGCGGGGAGGAGTACCGGGTGAAG
GCGCGCTCGCTACGGTTCAACGTGGCGTACGAGCAGAACCCTGACCTCTT
TGTCGACGTGCTCGCGGGCAAGGTGAGCGCGGAAGAGCTCTGCGGCATGA
CGGACGAGCAGCTGGCGAGCCGCAAGCAGCAGGAGGAGCGCCAGAAGGTC
CGCGAGGAGTCCGTGCACGACCACTGGCGCCGCGAGGGTGCCGACGGCAA
GGCCGCCGCCGATGGCGCCGCGCTCGTCTTCAAGGACGGCGACTTTGTGG
CTGTGAAAGAGCTCAAG
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