prot_P-wetherbeei_contig5792.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig5792.1.1
Unique Nameprot_P-wetherbeei_contig5792.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length539
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5792.1.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.720e-16
Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 0 
Query:  385 RARGKVRQRFRDMFEAGMRRLQLPEASSMVLACVLAFDVESEAYEMLVQGADRSRGGNGGEEYRVKARSLRFNVAYEQNPDLFVDVLAGKVSAEELCGMTDEQLASRKQQEERQKVREESVHDHWRREGADGKAAADGAALVFKDGDFVAVKELK 539
            R R KV  RFR++F  GM  L +  A + VL  +LA+D+E E     +    R+  G     Y+ KA+SLRFN+ + +NP+LF D+L+G  S + LCGM+ ++LAS   +EER+++R+ES   H R+E        +G  +V+KDG    + ++K
Sbjct: 1043 RFRHKVMDRFRELFADGMAELGVDAADAAVLCGMLAWDLEHE-----LNAFSRTNRGV----YKEKAQSLRFNIKFAKNPELFKDLLSGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHLRQED-------EGNEIVYKDGALQKIDKVK 1181
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5792.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF7_ECTSI2.720e-1638.06TFIIS central domain-containing protein (Fragment)... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 388..499
e-value: 2.1E-9
score: 47.2
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 389..508
e-value: 2.9E-20
score: 72.8
IPR003618Transcription elongation factor S-II, central domainPROSITEPS51321TFIIS_CENTRALcoord: 390..516
score: 14.420744
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 370..491
e-value: 1.4E-14
score: 56.3
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 383..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5792contigP-wetherbeei_contig5792:237..2275 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5792.1.1mRNA_P-wetherbeei_contig5792.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig5792 237..2277 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig5792.1.1 ID=prot_P-wetherbeei_contig5792.1.1|Name=mRNA_P-wetherbeei_contig5792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=539bp
GTAAGWKGGHSLSGRTGGGGGGGGGGGRCGAAAAAPTATAAAGAVAAAGG
GGRTGRQAAQSARDRMKGWTATLTRGERCGSGDPNAPFNGGGGGGTDYGE
DDGAWVPPPSSSGKAAFGGGSEGSAGAQHRKTPSGGAPRLDSAAGALAHL
LPPTGPRAPVRGPKCTRTGCKVERAPGSAGTYCGDACALKARHEALRAAI
AVQQRRAVAWAEAGAATPAPLAAVNAAGAPAAAIVAQSVVAVGAPPLPPQ
LPGPSLTAASDKPAAKAAPAAPAAAVVAKPKAAGPVTSPLGEAELLRIDE
QISSMGGLLHEVLEASAGTAAGTAVATGDGRAVEAAAAVGAAPGALSPVQ
AATAAVTLAAAAQAAAVAAALERLQTGVDADKTDRARGKVRQRFRDMFEA
GMRRLQLPEASSMVLACVLAFDVESEAYEMLVQGADRSRGGNGGEEYRVK
ARSLRFNVAYEQNPDLFVDVLAGKVSAEELCGMTDEQLASRKQQEERQKV
REESVHDHWRREGADGKAAADGAALVFKDGDFVAVKELK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003618TFIIS_cen_dom
IPR036575TFIIS_cen_dom_sf