mRNA_P-wetherbeei_contig57886.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57886.1.1
Unique NamemRNA_P-wetherbeei_contig57886.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A5C7NI52_9PROT (Diaminopimelate epimerase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NI52_9PROT)

HSP 1 Score: 65.5 bits (158), Expect = 1.120e-10
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNVRTTVEVERIAEGILDHEWLARRNL 231
            EAET++CGTG+ A ALIA  L  A  PV +  +GGG LRI F    +  F++VR     E IA G +D  WL  R L
Sbjct:  237 EAETLACGTGSVATALIAHLLEKAPSPVTVLPTGGGTLRIDFRPVGNGRFEDVRLAGPAETIATGTVDEAWLRERKL 313          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A3B0WB98_9ZZZZ (Diaminopimelate epimerase (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0WB98_9ZZZZ)

HSP 1 Score: 56.2 bits (134), Expect = 1.390e-8
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNVRTTVEVERIAEGILDHEWL 216
            E ET++CGTGATA AL+AA +G A  PV I  SGG  L I FD + D+   NV        I +G L  E L
Sbjct:   10 EGETLACGTGATATALVAALVGRASSPVEIITSGGDRLVILFDLATDKTVHNVFLKGPAHVIYKGKLKAEAL 81          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A836SRX9_9BACT (Diaminopimelate epimerase n=1 Tax=Kiritimatiellae bacterium TaxID=2212473 RepID=A0A836SRX9_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.610e-8
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNVRTTVEVERIAEGILD 204
            EAET +CGTG TA AL+AARLGL   PV + ++GG  L++ F+ S +  F  VR +   E + +GI++
Sbjct:  202 EAETPACGTGITAAALVAARLGLVTSPVTVVSAGGDRLKVVFEVSGES-FSRVRLSGPAEYVFKGIVE 268          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A7Z9YYV2_9DELT (Diaminopimelate epimerase n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Z9YYV2_9DELT)

HSP 1 Score: 57.8 bits (138), Expect = 5.840e-8
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNV 159
            E ET++CGTGA A A+ AA  G+   PVR++ SGG +L+I FD   D H +NV
Sbjct:  207 EDETMACGTGAVAAAIFAAEKGVCSSPVRVTTSGGEQLKIVFDLQEDGHAENV 259          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A2V5P3Q0_9BACT (Diaminopimelate epimerase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5P3Q0_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 7.670e-8
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNVRTTVEVERIAEGILD 204
            E ET++CGTG TA ALI++R+   + PVR+   GG EL ++F+E+ +  F  VR T   E + EG +D
Sbjct:  202 EGETLACGTGVTASALISSRVHQFRSPVRVQVQGGDELEVSFNET-NGQFAEVRLTGPAEFVFEGRID 268          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A432QWT8_9DELT (Diaminopimelate epimerase n=1 Tax=Desulfocapsa sp. TaxID=2066021 RepID=A0A432QWT8_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 8.060e-8
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNV 159
            E ET++CGTGA A A+ AA  G+   PVR++ SGG +L+I FD   D H +NV
Sbjct:  207 EDETMACGTGAVASAIFAAEKGVCSSPVRVTTSGGEQLKIVFDLQEDGHAENV 259          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A7C4LQU6_9BACT (Diaminopimelate epimerase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C4LQU6_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-7
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNVRTTVEVERIAEGILD 204
            E ET++CGTG TA AL+ ARL     P+R+   GG  L +AFD+S D+ F NV  T   + + EG ++
Sbjct:  202 EGETLACGTGVTAAALVVARLEGFASPIRVRVQGGDVLEVAFDQSGDQ-FVNVTLTGPADFVFEGTIE 268          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A7C1GBS7_9DELT (Diaminopimelate epimerase n=2 Tax=Bacteria TaxID=2 RepID=A0A7C1GBS7_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 1.550e-7
Identity = 34/76 (44.74%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNVRTTVEVERIAEGILDHEWLARRN 228
            E ET++CGTGATA AL+AA +G A  PV I  SGG  L I FD + D+   NV        I +G L  E L   +
Sbjct:  207 EGETLACGTGATATALVAALVGRASSPVEIITSGGDRLVILFDLATDKTVHNVFLKGPAHVIYKGELKAEALIENS 282          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A7C5EHB3_9BACT (Diaminopimelate epimerase n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7C5EHB3_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 2.040e-7
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNVRTTVEVERIAEGILDH 207
            EAET++CGTG  A AL+AAR GLA PPVR+ A+ G  L + F  S +  F+NV        + EG L +
Sbjct:  202 EAETLACGTGIVAGALVAARNGLATPPVRVRAASGDTLTVNFSRSGET-FENVTLQGPAVHVFEGDLTY 269          
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Match: A0A0A2HYY7_9DELT (Diaminopimelate epimerase n=2 Tax=Desulfobulbaceae TaxID=213121 RepID=A0A0A2HYY7_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 2.100e-7
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    1 EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHFQNVRTTVEVERIAEGILDHEWL 216
            E ET++CGTGA A ALIA    + +PPV++  SGG  L +AFD    R   NV        I EG+L  E L
Sbjct:  206 EDETMACGTGAVAAALIAGLRRMVRPPVQVVTSGGERLTVAFDLPEGRGIGNVHLQGPARLIYEGLLTAESL 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57886.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7NI52_9PROT1.120e-1046.75Diaminopimelate epimerase n=1 Tax=Rhodospirillacea... [more]
A0A3B0WB98_9ZZZZ1.390e-847.22Diaminopimelate epimerase (Fragment) n=1 Tax=hydro... [more]
A0A836SRX9_9BACT1.610e-845.59Diaminopimelate epimerase n=1 Tax=Kiritimatiellae ... [more]
A0A7Z9YYV2_9DELT5.840e-850.94Diaminopimelate epimerase n=1 Tax=Desulfobacterale... [more]
A0A2V5P3Q0_9BACT7.670e-844.12Diaminopimelate epimerase n=1 Tax=Verrucomicrobia ... [more]
A0A432QWT8_9DELT8.060e-850.94Diaminopimelate epimerase n=1 Tax=Desulfocapsa sp.... [more]
A0A7C4LQU6_9BACT1.060e-744.12Diaminopimelate epimerase n=1 Tax=Verrucomicrobia ... [more]
A0A7C1GBS7_9DELT1.550e-744.74Diaminopimelate epimerase n=2 Tax=Bacteria TaxID=2... [more]
A0A7C5EHB3_9BACT2.040e-746.38Diaminopimelate epimerase n=1 Tax=Lentisphaerae ba... [more]
A0A0A2HYY7_9DELT2.100e-744.44Diaminopimelate epimerase n=2 Tax=Desulfobulbaceae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57886contigP-wetherbeei_contig57886:2..250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380391.JIAS01000003_gene1723
Preferred namedapF
PFAMsDAP_epimerase
Model size249
Max annot lvl1224|Proteobacteria
KEGG rclassRC00302
KEGG koko:K01778
KEGG ReactionR02735
KEGG Pathwayko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00527
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.73e-09
EggNOG OGsCOG0253@1|root,COG0253@2|Bacteria,1MWDH@1224|Proteobacteria
EC5.1.1.7
DescriptionCatalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
Cds size249
COG categoryE
BiGG ReactioniIT341.HP0566
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.074417-CDS-P-wetherbeei_contig57886:1..2501683186858.074417-CDS-P-wetherbeei_contig57886:1..250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57886 2..250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57886.1.1prot_P-wetherbeei_contig57886.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57886 2..250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57886.1.1

>prot_P-wetherbeei_contig57886.1.1 ID=prot_P-wetherbeei_contig57886.1.1|Name=mRNA_P-wetherbeei_contig57886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
EAETVSCGTGATAIALIAARLGLAKPPVRISASGGGELRIAFDESPDRHF
QNVRTTVEVERIAEGILDHEWLARRNLTAAIA*
back to top

mRNA from alignment at P-wetherbeei_contig57886:2..250+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57886.1.1 ID=mRNA_P-wetherbeei_contig57886.1.1|Name=mRNA_P-wetherbeei_contig57886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig57886:2..250+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGGAAACCGTGTCCTGCGGCACCGGCGCCACCGCCATCGCGCTGAT CGCCGCGCGTCTCGGATTGGCAAAGCCGCCGGTGCGCATTTCAGCCAGCG GCGGTGGCGAGTTGCGCATCGCCTTCGACGAATCGCCGGACCGACACTTT CAAAACGTGCGAACCACCGTCGAAGTGGAGCGTATCGCCGAAGGCATTCT GGATCACGAATGGCTGGCACGGCGCAATCTGACGGCGGCGATCGCCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57886:2..250+

>mRNA_P-wetherbeei_contig57886.1.1 ID=mRNA_P-wetherbeei_contig57886.1.1|Name=mRNA_P-wetherbeei_contig57886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig57886:2..250+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGGAAACCGTGTCCTGCGGCACCGGCGCCACCGCCATCGCGCTGAT
CGCCGCGCGTCTCGGATTGGCAAAGCCGCCGGTGCGCATTTCAGCCAGCG
GCGGTGGCGAGTTGCGCATCGCCTTCGACGAATCGCCGGACCGACACTTT
CAAAACGTGCGAACCACCGTCGAAGTGGAGCGTATCGCCGAAGGCATTCT
GGATCACGAATGGCTGGCACGGCGCAATCTGACGGCGGCGATCGCCTAG
back to top